RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 DIP2BQ9P265 1576 aa12.21□□□□□ -0.46
LIG3-216ENST00000593099 A0A0U1RQG5 324 aaPredicted RBP12.2□□□□□ -0.46
LIG3-216ENST00000593099 FLT4P35916 1363 aa12.2□□□□□ -0.46
LIG3-216ENST00000593099 TRIM44Q96DX7 344 aaPredicted RBP12.2□□□□□ -0.46
LIG3-216ENST00000593099 ZNF335Q9H4Z2 1342 aaPredicted RBP12.2□□□□□ -0.46
LIG3-216ENST00000593099 DDB1Q16531 1140 aa12.2□□□□□ -0.46
LIG3-216ENST00000593099 GNAI3P08754 354 aa12.2□□□□□ -0.46
LIG3-216ENST00000593099 ISY1Q9ULR0 285 aaKnown RBP12.2□□□□□ -0.46
LIG3-216ENST00000593099 A2ML1A8K2U0 1454 aa12.2□□□□□ -0.46
LIG3-216ENST00000593099 HSP90AB4PQ58FF6 505 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 SPATA31E1Q6ZUB1 1445 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 MYL6BP14649 208 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 CCDC184Q52MB2 194 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 VPS37DQ86XT2 251 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 PKNOX2Q96KN3 472 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 CRBNQ96SW2 442 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 THUMPD2Q9BTF0 503 aaKnown RBP12.19□□□□□ -0.46
LIG3-216ENST00000593099 POLKQ9UBT6 870 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 COL17A1Q9UMD9 1497 aaPredicted RBP12.19□□□□□ -0.46
LIG3-216ENST00000593099 BTG4Q9NY30 223 aa12.19□□□□□ -0.46
LIG3-216ENST00000593099 CDC42BPBQ9Y5S2 1711 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 DCTN1Q14203 1278 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 PLEKHH1Q9ULM0 1364 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 ASXL1Q8IXJ9 1541 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 IL2RBP14784 551 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 WWC1Q8IX03 1113 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 IP6K1Q92551 441 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 ANKRD45Q5TZF3 282 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 ZNF428Q96B54 188 aa12.18□□□□□ -0.46
LIG3-216ENST00000593099 PPP1R1BQ9UD71 204 aaPredicted RBP12.18□□□□□ -0.46
LIG3-216ENST00000593099 DDX17Q92841 729 aaKnown RBP12.17□□□□□ -0.46
LIG3-216ENST00000593099 TET3O43151 1660 aa12.17□□□□□ -0.46
LIG3-216ENST00000593099 EDC4Q6P2E9 1401 aaKnown RBP12.17□□□□□ -0.46
LIG3-216ENST00000593099 CARD14Q9BXL6 1004 aa12.17□□□□□ -0.46
LIG3-216ENST00000593099 PIK3C2GO75747 1445 aa12.17□□□□□ -0.46
LIG3-216ENST00000593099 LRRFIP1Q32MZ4 808 aaKnown RBP12.17□□□□□ -0.46
LIG3-216ENST00000593099 IFT57Q9NWB7 429 aa12.17□□□□□ -0.46
LIG3-216ENST00000593099 MIS18AQ9NYP9 233 aa12.17□□□□□ -0.46
LIG3-216ENST00000593099 MAP3K19Q56UN5 1328 aa12.16□□□□□ -0.46
LIG3-216ENST00000593099 EIF4A2Q14240 407 aaKnown RBP12.16□□□□□ -0.46
LIG3-216ENST00000593099 FMNL2Q96PY5 1086 aa12.16□□□□□ -0.46
LIG3-216ENST00000593099 IFIT2P09913 472 aaKnown RBP12.16□□□□□ -0.46
LIG3-216ENST00000593099 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
LIG3-216ENST00000593099 DUSP27Q5VZP5 1158 aa12.16□□□□□ -0.46
LIG3-216ENST00000593099 EXOC6Q8TAG9 804 aa12.16□□□□□ -0.46
LIG3-216ENST00000593099 MYOM2P54296 1465 aa12.15□□□□□ -0.46
LIG3-216ENST00000593099 AAMPQ13685 434 aa12.15□□□□□ -0.46
LIG3-216ENST00000593099 CDCA7Q9BWT1 371 aaPredicted RBP12.15□□□□□ -0.46
LIG3-216ENST00000593099 SRCIN1Q9C0H9 1055 aa12.15□□□□□ -0.46
LIG3-216ENST00000593099 RTN4Q9NQC3 1192 aaKnown RBP12.15□□□□□ -0.46
LIG3-216ENST00000593099 ZNF652Q9Y2D9 606 aa12.15□□□□□ -0.46
LIG3-216ENST00000593099 NOL10Q9BSC4 688 aaKnown RBP12.15□□□□□ -0.46
LIG3-216ENST00000593099 DIP2CQ9Y2E4 1556 aa12.15□□□□□ -0.47
LIG3-216ENST00000593099 HOXC9P31274 260 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 ANP32BQ92688 251 aaKnown RBP12.14□□□□□ -0.47
LIG3-216ENST00000593099 TAOK2Q9UL54 1235 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 AGLP35573 1532 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 ZPR1O75312 459 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 CCT4P50991 539 aaKnown RBP12.14□□□□□ -0.47
LIG3-216ENST00000593099 PANK1Q8TE04 598 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 ROBO2Q9HCK4 1378 aa12.14□□□□□ -0.47
LIG3-216ENST00000593099 CENPQQ7L2Z9 268 aaPredicted RBP12.14□□□□□ -0.47
LIG3-216ENST00000593099 NBR1Q14596 966 aa12.13□□□□□ -0.47
LIG3-216ENST00000593099 SMARCC1Q92922 1105 aaPredicted RBP12.13□□□□□ -0.47
LIG3-216ENST00000593099 ZFYVE9O95405 1425 aa12.13□□□□□ -0.47
LIG3-216ENST00000593099 PLA2R1Q13018 1463 aa12.13□□□□□ -0.47
LIG3-216ENST00000593099 SBNO2Q9Y2G9 1366 aa12.13□□□□□ -0.47
LIG3-216ENST00000593099 BCL11BQ9C0K0 894 aaPredicted RBP12.13□□□□□ -0.47
LIG3-216ENST00000593099 FBXW7Q969H0 707 aa12.13□□□□□ -0.47
LIG3-216ENST00000593099 KDM5CP41229 1560 aa12.12□□□□□ -0.47
LIG3-216ENST00000593099 PTMSP20962 102 aa12.12□□□□□ -0.47
LIG3-216ENST00000593099 NOB1Q9ULX3 412 aaKnown RBP12.12□□□□□ -0.47
LIG3-216ENST00000593099 AKAP4Q5JQC9 854 aa12.12□□□□□ -0.47
LIG3-216ENST00000593099 BICDL1Q6ZP65 573 aa12.12□□□□□ -0.47
LIG3-216ENST00000593099 IQGAP3Q86VI3 1631 aa12.12□□□□□ -0.47
LIG3-216ENST00000593099 NEUROD6Q96NK8 337 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 EYA1Q99502 592 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 ARHGEF40Q8TER5 1519 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 AEBP1Q8IUX7 1158 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 AK7Q96M32 723 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 USP21Q9UK80 565 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 SLFN5Q08AF3 891 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 RILPL2Q969X0 211 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 ACSBG1Q96GR2 724 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 FAM135BQ49AJ0 1406 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 GNAI2P04899 355 aa12.11□□□□□ -0.47
LIG3-216ENST00000593099 SBNO1A3KN83 1393 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 PDE3AQ14432 1141 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 GOLGA6L22H0YM25 854 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 TOMM22Q9NS69 142 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 HTATSF1O43719 755 aaKnown RBP12.1□□□□□ -0.47
LIG3-216ENST00000593099 HSP90AB3PQ58FF7 597 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 LARP1Q6PKG0 1096 aaKnown RBP12.1□□□□□ -0.47
LIG3-216ENST00000593099 ATF7IPQ6VMQ6 1270 aa12.1□□□□□ -0.47
LIG3-216ENST00000593099 POLR3AO14802 1390 aaPredicted RBP12.09□□□□□ -0.47
LIG3-216ENST00000593099 SURF6O75683 361 aaKnown RBP12.09□□□□□ -0.47
LIG3-216ENST00000593099 DBF4Q9UBU7 674 aaPredicted RBP12.09□□□□□ -0.47
LIG3-216ENST00000593099 MAP3K4Q9Y6R4 1608 aa12.09□□□□□ -0.47
LIG3-216ENST00000593099 SNRPA1P09661 255 aaKnown RBP12.09□□□□□ -0.47
LIG3-216ENST00000593099 CNNM1Q9NRU3 951 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms