RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ATP7BP35670 1465 aa16.1■□□□□ 0.17
SMAD4-211ENST00000590499 QRICH2Q9H0J4 1663 aa16.09■□□□□ 0.17
SMAD4-211ENST00000590499 ITSN1Q15811 1721 aa16.09■□□□□ 0.17
SMAD4-211ENST00000590499 NBPF8Q3BBV2 869 aa16.09■□□□□ 0.17
SMAD4-211ENST00000590499 TOPAZ1Q8N9V7 1692 aa16.08■□□□□ 0.17
SMAD4-211ENST00000590499 XPCQ01831 940 aaPredicted RBP16.08■□□□□ 0.16
SMAD4-211ENST00000590499 BOLA1Q9Y3E2 137 aa16.08■□□□□ 0.16
SMAD4-211ENST00000590499 TONSLQ96HA7 1378 aa16.08■□□□□ 0.16
SMAD4-211ENST00000590499 TRPM3Q9HCF6 1732 aaPredicted RBP16.07■□□□□ 0.16
SMAD4-211ENST00000590499 RALGAPBQ86X10 1494 aa16.06■□□□□ 0.16
SMAD4-211ENST00000590499 ROCK2O75116 1388 aaKnown RBP16.06■□□□□ 0.16
SMAD4-211ENST00000590499 CENPJQ9HC77 1338 aaPredicted RBP16.06■□□□□ 0.16
SMAD4-211ENST00000590499 NUTM2BA6NNL0 878 aaPredicted RBP16.06■□□□□ 0.16
SMAD4-211ENST00000590499 NUTM2EB1AL46 878 aaPredicted RBP16.06■□□□□ 0.16
SMAD4-211ENST00000590499 NUTM2AQ8IVF1 878 aaPredicted RBP16.06■□□□□ 0.16
SMAD4-211ENST00000590499 SPATA31A3Q5VYP0 1347 aa16.05■□□□□ 0.16
SMAD4-211ENST00000590499 POTEAQ6S8J7 498 aa16.05■□□□□ 0.16
SMAD4-211ENST00000590499 PCGF6Q9BYE7 350 aa16.05■□□□□ 0.16
SMAD4-211ENST00000590499 CABP2Q9NPB3 220 aa16.05■□□□□ 0.16
SMAD4-211ENST00000590499 TNS3Q68CZ2 1445 aa16.04■□□□□ 0.16
SMAD4-211ENST00000590499 SBNO1A3KN83 1393 aa16.04■□□□□ 0.16
SMAD4-211ENST00000590499 MEX3CQ5U5Q3 659 aaKnown RBP16.04■□□□□ 0.16
SMAD4-211ENST00000590499 KRT28Q7Z3Y7 464 aa16.04■□□□□ 0.16
SMAD4-211ENST00000590499 MARF1Q9Y4F3 1742 aaKnown RBP16.04■□□□□ 0.16
SMAD4-211ENST00000590499 ALS2Q96Q42 1657 aa16.03■□□□□ 0.16
SMAD4-211ENST00000590499 SOCS7O14512 581 aa16.03■□□□□ 0.16
SMAD4-211ENST00000590499 HOXB1P14653 301 aaPredicted RBP16.03■□□□□ 0.16
SMAD4-211ENST00000590499 PMFBP1Q8TBY8 1022 aa16.03■□□□□ 0.16
SMAD4-211ENST00000590499 CDK19Q9BWU1 502 aa16.03■□□□□ 0.16
SMAD4-211ENST00000590499 NUDT16Q96DE0 195 aaKnown RBP16.02■□□□□ 0.16
SMAD4-211ENST00000590499 ABCA3Q99758 1704 aa16.02■□□□□ 0.15
SMAD4-211ENST00000590499 CLSPNQ9HAW4 1339 aa16■□□□□ 0.15
SMAD4-211ENST00000590499 G3V3G9 751 aa16■□□□□ 0.15
SMAD4-211ENST00000590499 PSME1Q06323 249 aa16■□□□□ 0.15
SMAD4-211ENST00000590499 POLR3AO14802 1390 aaPredicted RBP16■□□□□ 0.15
SMAD4-211ENST00000590499 AFF2P51816 1311 aa15.99■□□□□ 0.15
SMAD4-211ENST00000590499 ZNF772Q68DY9 489 aaPredicted RBP15.99■□□□□ 0.15
SMAD4-211ENST00000590499 ADAMTS2O95450 1211 aa15.98■□□□□ 0.15
SMAD4-211ENST00000590499 C8orf37Q96NL8 207 aa15.98■□□□□ 0.15
SMAD4-211ENST00000590499 CRYBG1Q9Y4K1 1723 aa15.98■□□□□ 0.15
SMAD4-211ENST00000590499 ARHGEF10O15013 1369 aa15.98■□□□□ 0.15
SMAD4-211ENST00000590499 SBNO2Q9Y2G9 1366 aa15.98■□□□□ 0.15
SMAD4-211ENST00000590499 PLEKHG3A1L390 1219 aa15.97■□□□□ 0.15
SMAD4-211ENST00000590499 ZNF710Q8N1W2 664 aa15.97■□□□□ 0.15
SMAD4-211ENST00000590499 NGDNQ8NEJ9 315 aaKnown RBP15.96■□□□□ 0.15
SMAD4-211ENST00000590499 CARD11Q9BXL7 1154 aa15.96■□□□□ 0.15
SMAD4-211ENST00000590499 PPIP5K1Q6PFW1 1433 aa15.95■□□□□ 0.14
SMAD4-211ENST00000590499 SRPK2P78362 688 aaKnown RBP15.95■□□□□ 0.14
SMAD4-211ENST00000590499 ERBB3P21860 1342 aa15.94■□□□□ 0.14
SMAD4-211ENST00000590499 DOK7Q18PE1 504 aa15.94■□□□□ 0.14
SMAD4-211ENST00000590499 FNBP4Q8N3X1 1017 aaPredicted RBP15.94■□□□□ 0.14
SMAD4-211ENST00000590499 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.94■□□□□ 0.14
SMAD4-211ENST00000590499 ACEP12821 1306 aa15.94■□□□□ 0.14
SMAD4-211ENST00000590499 EVC2Q86UK5 1308 aa15.94■□□□□ 0.14
SMAD4-211ENST00000590499 RNF25Q96BH1 459 aaPredicted RBP15.93■□□□□ 0.14
SMAD4-211ENST00000590499 NGLY1Q96IV0 654 aa15.93■□□□□ 0.14
SMAD4-211ENST00000590499 BCL9LQ86UU0 1499 aa15.92■□□□□ 0.14
SMAD4-211ENST00000590499 RIOK3O14730 519 aaKnown RBP15.92■□□□□ 0.14
SMAD4-211ENST00000590499 CABLES1Q8TDN4 633 aa15.92■□□□□ 0.14
SMAD4-211ENST00000590499 TIMELESSQ9UNS1 1208 aa15.92■□□□□ 0.14
SMAD4-211ENST00000590499 SLIT2O94813 1529 aa15.92■□□□□ 0.14
SMAD4-211ENST00000590499 CDK12Q9NYV4 1490 aaPredicted RBP15.91■□□□□ 0.14
SMAD4-211ENST00000590499 PLCH1Q4KWH8 1693 aa15.91■□□□□ 0.14
SMAD4-211ENST00000590499 ATRNO75882 1429 aa15.91■□□□□ 0.14
SMAD4-211ENST00000590499 AKAP12Q02952 1782 aa15.9■□□□□ 0.14
SMAD4-211ENST00000590499 LMOD2Q6P5Q4 547 aa15.9■□□□□ 0.14
SMAD4-211ENST00000590499 NWD2Q9ULI1 1742 aa15.9■□□□□ 0.14
SMAD4-211ENST00000590499 PHRF1Q9P1Y6 1649 aaKnown RBP15.9■□□□□ 0.14
SMAD4-211ENST00000590499 USP21Q9UK80 565 aa15.89■□□□□ 0.13
SMAD4-211ENST00000590499 ATAD2Q6PL18 1390 aa15.88■□□□□ 0.13
SMAD4-211ENST00000590499 USP6P35125 1406 aa15.88■□□□□ 0.13
SMAD4-211ENST00000590499 SSH2Q76I76 1423 aa15.88■□□□□ 0.13
SMAD4-211ENST00000590499 RXRBP28702 533 aa15.88■□□□□ 0.13
SMAD4-211ENST00000590499 QTRT2Q9H974 415 aaKnown RBP15.88■□□□□ 0.13
SMAD4-211ENST00000590499 CABP1Q9NZU7 370 aa15.88■□□□□ 0.13
SMAD4-211ENST00000590499 BRD4O60885 1362 aaPredicted RBP15.87■□□□□ 0.13
SMAD4-211ENST00000590499 RBM6P78332 1123 aaKnown RBP15.87■□□□□ 0.13
SMAD4-211ENST00000590499 RNF166Q96A37 237 aaPredicted RBP15.87■□□□□ 0.13
SMAD4-211ENST00000590499 TESK2Q96S53 571 aa15.87■□□□□ 0.13
SMAD4-211ENST00000590499 NRKQ7Z2Y5 1582 aa15.87■□□□□ 0.13
SMAD4-211ENST00000590499 RGS12O14924 1447 aa15.86■□□□□ 0.13
SMAD4-211ENST00000590499 NRAPQ86VF7 1730 aa15.86■□□□□ 0.13
SMAD4-211ENST00000590499 TRPC5Q9UL62 973 aaPredicted RBP15.86■□□□□ 0.13
SMAD4-211ENST00000590499 MON2Q7Z3U7 1717 aa15.85■□□□□ 0.13
SMAD4-211ENST00000590499 COL14A1Q05707 1796 aaKnown RBP15.85■□□□□ 0.13
SMAD4-211ENST00000590499 VARS2Q5ST30 1063 aaKnown RBP15.85■□□□□ 0.13
SMAD4-211ENST00000590499 PIK3C2AO00443 1686 aa15.85■□□□□ 0.13
SMAD4-211ENST00000590499 CPSF1Q10570 1443 aaKnown RBP15.85■□□□□ 0.13
SMAD4-211ENST00000590499 ST20-MTHFSA0A0A6YYL1 179 aa15.84■□□□□ 0.13
SMAD4-211ENST00000590499 FAM83GA6ND36 823 aa15.84■□□□□ 0.13
SMAD4-211ENST00000590499 ECM2O94769 699 aaPredicted RBP15.84■□□□□ 0.13
SMAD4-211ENST00000590499 HAP1P54257 671 aaPredicted RBP15.84■□□□□ 0.13
SMAD4-211ENST00000590499 CCER1Q8TC90 406 aaPredicted RBP15.84■□□□□ 0.13
SMAD4-211ENST00000590499 USP19O94966 1318 aa15.84■□□□□ 0.13
SMAD4-211ENST00000590499 USP47Q96K76 1375 aa15.84■□□□□ 0.13
SMAD4-211ENST00000590499 CD163L1Q9NR16 1453 aa15.84■□□□□ 0.13
SMAD4-211ENST00000590499 GLI3P10071 1580 aa15.83■□□□□ 0.13
SMAD4-211ENST00000590499 UNC5CLQ8IV45 518 aa15.83■□□□□ 0.12
SMAD4-211ENST00000590499 PUS7Q96PZ0 661 aaKnown RBP15.82■□□□□ 0.12
SMAD4-211ENST00000590499 EP400Q96L91 3159 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms