RNA–Protein interactions for RNA: ENST00000587339.2

TRIM47-204, Transcript of tripartite motif containing 47, humanhuman

TSL 1 (best)

Gene TRIM47, Length 1,907 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47-204ENST00000587339 ZNF335Q9H4Z2 1342 aaPredicted RBP25.98■■□□□ 1.75
TRIM47-204ENST00000587339 AMPHP49418 695 aa25.98■■□□□ 1.75
TRIM47-204ENST00000587339 XPCQ01831 940 aaPredicted RBP25.97■■□□□ 1.75
TRIM47-204ENST00000587339 RRP1P56182 461 aaKnown RBP25.95■■□□□ 1.74
TRIM47-204ENST00000587339 KRT28Q7Z3Y7 464 aa25.95■■□□□ 1.74
TRIM47-204ENST00000587339 KIF24Q5T7B8 1368 aa25.95■■□□□ 1.74
TRIM47-204ENST00000587339 RIPK4P57078 832 aa25.94■■□□□ 1.74
TRIM47-204ENST00000587339 TRIM35Q9UPQ4 493 aa25.92■■□□□ 1.74
TRIM47-204ENST00000587339 XIRP1Q702N8 1843 aaKnown RBP25.92■■□□□ 1.74
TRIM47-204ENST00000587339 PHACTR3Q96KR7 559 aa25.92■■□□□ 1.74
TRIM47-204ENST00000587339 KCNH5Q8NCM2 988 aa25.91■■□□□ 1.74
TRIM47-204ENST00000587339 SULT6B1Q6IMI4 303 aa25.9■■□□□ 1.74
TRIM47-204ENST00000587339 LMOD2Q6P5Q4 547 aa25.9■■□□□ 1.74
TRIM47-204ENST00000587339 TRPM3Q9HCF6 1732 aaPredicted RBP25.89■■□□□ 1.74
TRIM47-204ENST00000587339 HOXC9P31274 260 aa25.89■■□□□ 1.74
TRIM47-204ENST00000587339 NFE2L2Q16236 605 aa25.88■■□□□ 1.73
TRIM47-204ENST00000587339 MYH16Q9H6N6 1097 aa25.88■■□□□ 1.73
TRIM47-204ENST00000587339 NFAT5O94916 1531 aa25.87■■□□□ 1.73
TRIM47-204ENST00000587339 AEBP1Q8IUX7 1158 aa25.87■■□□□ 1.73
TRIM47-204ENST00000587339 RTL1A6NKG5 1358 aa25.87■■□□□ 1.73
TRIM47-204ENST00000587339 RGPD1P0DJD0 1748 aa25.87■■□□□ 1.73
TRIM47-204ENST00000587339 NPHP3Q7Z494 1330 aa25.86■■□□□ 1.73
TRIM47-204ENST00000587339 ARHGEF10O15013 1369 aa25.86■■□□□ 1.73
TRIM47-204ENST00000587339 PPP4R2Q9NY27 417 aa25.84■■□□□ 1.73
TRIM47-204ENST00000587339 IL16Q14005 1332 aa25.84■■□□□ 1.73
TRIM47-204ENST00000587339 GCP02774 474 aa25.84■■□□□ 1.73
TRIM47-204ENST00000587339 DDX17Q92841 729 aaKnown RBP25.83■■□□□ 1.73
TRIM47-204ENST00000587339 LTN1O94822 1766 aa25.82■■□□□ 1.72
TRIM47-204ENST00000587339 SLIT3O75094 1523 aa25.82■■□□□ 1.72
TRIM47-204ENST00000587339 USP19O94966 1318 aa25.82■■□□□ 1.72
TRIM47-204ENST00000587339 IGSF1Q8N6C5 1336 aa25.81■■□□□ 1.72
TRIM47-204ENST00000587339 IP6K1Q92551 441 aa25.81■■□□□ 1.72
TRIM47-204ENST00000587339 EYA1Q99502 592 aa25.81■■□□□ 1.72
TRIM47-204ENST00000587339 PLIN1O60240 522 aa25.8■■□□□ 1.72
TRIM47-204ENST00000587339 PLEKHG5O94827 1062 aa25.8■■□□□ 1.72
TRIM47-204ENST00000587339 LMOD3Q0VAK6 560 aa25.8■■□□□ 1.72
TRIM47-204ENST00000587339 SLAIN2Q9P270 581 aa25.8■■□□□ 1.72
TRIM47-204ENST00000587339 KDRP35968 1356 aa25.8■■□□□ 1.72
TRIM47-204ENST00000587339 ALS2Q96Q42 1657 aa25.79■■□□□ 1.72
TRIM47-204ENST00000587339 BRINP3Q76B58 766 aa25.79■■□□□ 1.72
TRIM47-204ENST00000587339 FANCIQ9NVI1 1328 aa25.78■■□□□ 1.72
TRIM47-204ENST00000587339 ZBTB7CA1YPR0 619 aa25.78■■□□□ 1.72
TRIM47-204ENST00000587339 CALD1Q05682 793 aaKnown RBP25.77■■□□□ 1.72
TRIM47-204ENST00000587339 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.77■■□□□ 1.72
TRIM47-204ENST00000587339 LTV1Q96GA3 475 aaPredicted RBP25.77■■□□□ 1.72
TRIM47-204ENST00000587339 PHRF1Q9P1Y6 1649 aaKnown RBP25.77■■□□□ 1.72
TRIM47-204ENST00000587339 ARHGEF25Q86VW2 580 aa25.76■■□□□ 1.72
TRIM47-204ENST00000587339 TSR2Q969E8 191 aaKnown RBP25.76■■□□□ 1.72
TRIM47-204ENST00000587339 PXDNQ92626 1479 aa25.76■■□□□ 1.71
TRIM47-204ENST00000587339 TNS3Q68CZ2 1445 aa25.75■■□□□ 1.71
TRIM47-204ENST00000587339 PELP1Q8IZL8 1130 aaKnown RBP25.74■■□□□ 1.71
TRIM47-204ENST00000587339 BCAR3O75815 825 aa25.73■■□□□ 1.71
TRIM47-204ENST00000587339 THUMPD2Q9BTF0 503 aaKnown RBP25.73■■□□□ 1.71
TRIM47-204ENST00000587339 DLG5Q8TDM6 1919 aa25.72■■□□□ 1.71
TRIM47-204ENST00000587339 SPATA31A3Q5VYP0 1347 aa25.72■■□□□ 1.71
TRIM47-204ENST00000587339 MED1Q15648 1581 aaPredicted RBP25.71■■□□□ 1.71
TRIM47-204ENST00000587339 CT47B1P0C2W7 299 aaPredicted RBP25.71■■□□□ 1.71
TRIM47-204ENST00000587339 RARSP54136 660 aaKnown RBP25.7■■□□□ 1.7
TRIM47-204ENST00000587339 EXOSC9Q06265 439 aaKnown RBP25.7■■□□□ 1.7
TRIM47-204ENST00000587339 B4GALNT3Q6L9W6 998 aa25.7■■□□□ 1.7
TRIM47-204ENST00000587339 EXOC6Q8TAG9 804 aa25.7■■□□□ 1.7
TRIM47-204ENST00000587339 FAM83GA6ND36 823 aa25.69■■□□□ 1.7
TRIM47-204ENST00000587339 LAS1LQ9Y4W2 734 aaKnown RBP25.69■■□□□ 1.7
TRIM47-204ENST00000587339 IFT57Q9NWB7 429 aa25.69■■□□□ 1.7
TRIM47-204ENST00000587339 GNAI1P63096 354 aa25.68■■□□□ 1.7
TRIM47-204ENST00000587339 ZC3H6P61129 1189 aaKnown RBP25.67■■□□□ 1.7
TRIM47-204ENST00000587339 MTHFSDQ2M296 383 aaKnown RBP25.67■■□□□ 1.7
TRIM47-204ENST00000587339 C20orf194Q5TEA3 1177 aa25.67■■□□□ 1.7
TRIM47-204ENST00000587339 DCTN1Q14203 1278 aa25.67■■□□□ 1.7
TRIM47-204ENST00000587339 NBPF6Q5VWK0 638 aa25.66■■□□□ 1.7
TRIM47-204ENST00000587339 GAS2L2Q8NHY3 880 aa25.66■■□□□ 1.7
TRIM47-204ENST00000587339 NBPF4Q96M43 638 aa25.66■■□□□ 1.7
TRIM47-204ENST00000587339 SOS2Q07890 1332 aaPredicted RBP25.65■■□□□ 1.7
TRIM47-204ENST00000587339 USHBP1Q8N6Y0 703 aa25.65■■□□□ 1.7
TRIM47-204ENST00000587339 CCDC136Q96JN2 1154 aa25.65■■□□□ 1.7
TRIM47-204ENST00000587339 CFAP44Q96MT7 982 aa25.65■■□□□ 1.7
TRIM47-204ENST00000587339 ZNF853P0CG23 659 aa25.64■■□□□ 1.69
TRIM47-204ENST00000587339 CABLES1Q8TDN4 633 aa25.64■■□□□ 1.69
TRIM47-204ENST00000587339 CRBNQ96SW2 442 aa25.64■■□□□ 1.69
TRIM47-204ENST00000587339 AXIN2Q9Y2T1 843 aa25.63■■□□□ 1.69
TRIM47-204ENST00000587339 ANKRD24Q8TF21 1146 aa25.63■■□□□ 1.69
TRIM47-204ENST00000587339 CANXP27824 592 aaKnown RBP25.62■■□□□ 1.69
TRIM47-204ENST00000587339 MCM10Q7L590 875 aa25.62■■□□□ 1.69
TRIM47-204ENST00000587339 RTF1Q92541 710 aaKnown RBP25.61■■□□□ 1.69
TRIM47-204ENST00000587339 LRRC59Q96AG4 307 aaKnown RBP25.61■■□□□ 1.69
TRIM47-204ENST00000587339 MBIPQ9NS73 344 aa25.61■■□□□ 1.69
TRIM47-204ENST00000587339 BCL2L13Q9BXK5 485 aa25.61■■□□□ 1.69
TRIM47-204ENST00000587339 FRAT1Q92837 279 aaPredicted RBP25.6■■□□□ 1.69
TRIM47-204ENST00000587339 ERBB3P21860 1342 aa25.58■■□□□ 1.68
TRIM47-204ENST00000587339 CRYBG1Q9Y4K1 1723 aa25.57■■□□□ 1.68
TRIM47-204ENST00000587339 HTATSF1O43719 755 aaKnown RBP25.57■■□□□ 1.68
TRIM47-204ENST00000587339 PDE3AQ14432 1141 aa25.57■■□□□ 1.68
TRIM47-204ENST00000587339 SMC4Q9NTJ3 1288 aa25.57■■□□□ 1.68
TRIM47-204ENST00000587339 GNAT3A8MTJ3 354 aa25.56■■□□□ 1.68
TRIM47-204ENST00000587339 RGPD2P0DJD1 1756 aa25.56■■□□□ 1.68
TRIM47-204ENST00000587339 ZNF428Q96B54 188 aa25.55■■□□□ 1.68
TRIM47-204ENST00000587339 CPDO75976 1380 aa25.55■■□□□ 1.68
TRIM47-204ENST00000587339 NCAPD2Q15021 1401 aa25.55■■□□□ 1.68
TRIM47-204ENST00000587339 NHSL1Q5SYE7 1610 aa25.54■■□□□ 1.68
TRIM47-204ENST00000587339 LTBP4Q8N2S1 1624 aa25.54■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms