RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 MAPK8IP3Q9UPT6 1336 aa8.2□□□□□ -1.1
LIG3-206ENST00000586058 ROBO1Q9Y6N7 1651 aa8.2□□□□□ -1.1
LIG3-206ENST00000586058 PEAK1Q9H792 1746 aa8.2□□□□□ -1.1
LIG3-206ENST00000586058 PPM1GO15355 546 aaPredicted RBP8.19□□□□□ -1.1
LIG3-206ENST00000586058 CD44P16070 742 aaKnown RBP8.19□□□□□ -1.1
LIG3-206ENST00000586058 MTHFSP49914 203 aa8.19□□□□□ -1.1
LIG3-206ENST00000586058 NGEFQ8N5V2 710 aa8.19□□□□□ -1.1
LIG3-206ENST00000586058 RBM33Q96EV2 1170 aaKnown RBP8.19□□□□□ -1.1
LIG3-206ENST00000586058 PHLPP1O60346 1717 aa8.19□□□□□ -1.1
LIG3-206ENST00000586058 RGPD1P0DJD0 1748 aa8.19□□□□□ -1.1
LIG3-206ENST00000586058 NPHP3Q7Z494 1330 aa8.19□□□□□ -1.1
LIG3-206ENST00000586058 COL3A1P02461 1466 aaPredicted RBP8.19□□□□□ -1.1
LIG3-206ENST00000586058 MED1Q15648 1581 aaPredicted RBP8.18□□□□□ -1.1
LIG3-206ENST00000586058 SPDYE4A6NLX3 237 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 DIAPH1O60610 1272 aaKnown RBP8.18□□□□□ -1.1
LIG3-206ENST00000586058 NEFLP07196 543 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 ABTB2Q8N961 1025 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 ZNF335Q9H4Z2 1342 aaPredicted RBP8.18□□□□□ -1.1
LIG3-206ENST00000586058 RTL1A6NKG5 1358 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 KIF24Q5T7B8 1368 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 USP31Q70CQ4 1352 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 SSH2Q76I76 1423 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 SLIT3O75094 1523 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 ABCC6O95255 1503 aa8.18□□□□□ -1.1
LIG3-206ENST00000586058 RGPD2P0DJD1 1756 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 U2SURPO15042 1029 aaKnown RBP8.17□□□□□ -1.1
LIG3-206ENST00000586058 NLRP6P59044 892 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 KCNH5Q8NCM2 988 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 SBNO1A3KN83 1393 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 FLT4P35916 1363 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 TNS3Q68CZ2 1445 aa8.17□□□□□ -1.1
LIG3-206ENST00000586058 ARHGEF10O15013 1369 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 NFAT5O94916 1531 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 U2AF1L5P0DN76 240 aaPredicted RBP8.16□□□□□ -1.1
LIG3-206ENST00000586058 U2AF1Q01081 240 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIG3-206ENST00000586058 PDE3BQ13370 1112 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 IQSEC2Q5JU85 1478 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 LMOD2Q6P5Q4 547 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 CREBZFQ9NS37 354 aa8.16□□□□□ -1.1
LIG3-206ENST00000586058 PARP4Q9UKK3 1724 aaKnown RBP8.15□□□□□ -1.1
LIG3-206ENST00000586058 SOX12O15370 315 aa8.15□□□□□ -1.1
LIG3-206ENST00000586058 AMPHP49418 695 aa8.15□□□□□ -1.1
LIG3-206ENST00000586058 RUNDC1Q96C34 613 aa8.15□□□□□ -1.1
LIG3-206ENST00000586058 CAMTA1Q9Y6Y1 1673 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 AHDC1Q5TGY3 1603 aaPredicted RBP8.14□□□□□ -1.11
LIG3-206ENST00000586058 LTBP4Q8N2S1 1624 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 PXDNQ92626 1479 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 FOXO3O43524 673 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 KRT28Q7Z3Y7 464 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 ORAI2Q96SN7 254 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 ADAMTS8Q9UP79 889 aa8.14□□□□□ -1.11
LIG3-206ENST00000586058 PNPLA6Q8IY17 1366 aa8.13□□□□□ -1.11
LIG3-206ENST00000586058 HAP1P54257 671 aaPredicted RBP8.13□□□□□ -1.11
LIG3-206ENST00000586058 POLKQ9UBT6 870 aa8.13□□□□□ -1.11
LIG3-206ENST00000586058 EMILIN1Q9Y6C2 1016 aa8.13□□□□□ -1.11
LIG3-206ENST00000586058 COL22A1Q8NFW1 1626 aaPredicted RBP8.13□□□□□ -1.11
LIG3-206ENST00000586058 RRS1Q15050 365 aaKnown RBP8.12□□□□□ -1.11
LIG3-206ENST00000586058 CCDC146Q8IYE0 955 aa8.12□□□□□ -1.11
LIG3-206ENST00000586058 SALL2Q9Y467 1007 aaPredicted RBP8.12□□□□□ -1.11
LIG3-206ENST00000586058 WNK3Q9BYP7 1800 aa8.12□□□□□ -1.11
LIG3-206ENST00000586058 LMO7Q8WWI1 1683 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 ZBTB7CA1YPR0 619 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 POTEIP0CG38 1075 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 LMOD3Q0VAK6 560 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 NUTM2GQ5VZR2 741 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 SLAIN2Q9P270 581 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 DAXXQ9UER7 740 aaPredicted RBP8.11□□□□□ -1.11
LIG3-206ENST00000586058 ZRANB1Q9UGI0 708 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 COL14A1Q05707 1796 aaKnown RBP8.11□□□□□ -1.11
LIG3-206ENST00000586058 PLCH1Q4KWH8 1693 aa8.11□□□□□ -1.11
LIG3-206ENST00000586058 MAP3K19Q56UN5 1328 aa8.1□□□□□ -1.11
LIG3-206ENST00000586058 FCHSD2O94868 740 aa8.1□□□□□ -1.11
LIG3-206ENST00000586058 XPCQ01831 940 aaPredicted RBP8.1□□□□□ -1.11
LIG3-206ENST00000586058 CALD1Q05682 793 aaKnown RBP8.1□□□□□ -1.11
LIG3-206ENST00000586058 GOLGA2Q08379 1002 aa8.1□□□□□ -1.11
LIG3-206ENST00000586058 COL18A1P39060 1754 aa8.1□□□□□ -1.11
LIG3-206ENST00000586058 USP19O94966 1318 aa8.09□□□□□ -1.11
LIG3-206ENST00000586058 APAF1O14727 1248 aa8.09□□□□□ -1.11
LIG3-206ENST00000586058 BRINP3Q76B58 766 aa8.09□□□□□ -1.11
LIG3-206ENST00000586058 CACNA1FO60840 1977 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 LRRC37A3O60309 1634 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 COL16A1Q07092 1604 aaPredicted RBP8.08□□□□□ -1.12
LIG3-206ENST00000586058 PRKAR2BP31323 418 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 NEUROD2Q15784 382 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 TCP11L2Q8N4U5 519 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 ZNF579Q8NAF0 562 aaKnown RBP8.08□□□□□ -1.12
LIG3-206ENST00000586058 PKD1L3Q7Z443 1732 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 NWD2Q9ULI1 1742 aa8.08□□□□□ -1.12
LIG3-206ENST00000586058 SCN11AQ9UI33 1791 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 SPATA31A3Q5VYP0 1347 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 E9PSI1 815 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 TOM1O60784 492 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 PLEKHG5O94827 1062 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 GCP02774 474 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 HMOX1P09601 288 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 HOXC9P31274 260 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 EIF4A2Q14240 407 aaKnown RBP8.07□□□□□ -1.12
LIG3-206ENST00000586058 CCDC27Q2M243 656 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 MYH16Q9H6N6 1097 aa8.07□□□□□ -1.12
LIG3-206ENST00000586058 GTF3C3Q9Y5Q9 886 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms