RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 NUTM2GQ5VZR2 741 aa13.82□□□□□ -0.2
LIG3-203ENST00000585370 PRDM11Q9NQV5 511 aa13.82□□□□□ -0.2
LIG3-203ENST00000585370 ACEP12821 1306 aa13.82□□□□□ -0.2
LIG3-203ENST00000585370 CRYBG1Q9Y4K1 1723 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 CD163L1Q9NR16 1453 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 PLEKHG3A1L390 1219 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 CHRNA2Q15822 529 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 KIAA0232Q92628 1395 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 CPSF1Q10570 1443 aaKnown RBP13.81□□□□□ -0.2
LIG3-203ENST00000585370 PPIP5K1Q6PFW1 1433 aa13.81□□□□□ -0.2
LIG3-203ENST00000585370 FYB1O15117 783 aa13.8□□□□□ -0.2
LIG3-203ENST00000585370 FAM182BQ5T319 152 aa13.8□□□□□ -0.2
LIG3-203ENST00000585370 ADAMTS8Q9UP79 889 aa13.8□□□□□ -0.2
LIG3-203ENST00000585370 EDC4Q6P2E9 1401 aaKnown RBP13.8□□□□□ -0.2
LIG3-203ENST00000585370 ITSN1Q15811 1721 aa13.79□□□□□ -0.2
LIG3-203ENST00000585370 ZC3H6P61129 1189 aaKnown RBP13.79□□□□□ -0.2
LIG3-203ENST00000585370 NEFLP07196 543 aa13.78□□□□□ -0.2
LIG3-203ENST00000585370 SPATA31A1Q5TZJ5 1347 aa13.78□□□□□ -0.2
LIG3-203ENST00000585370 MTHFSP49914 203 aa13.77□□□□□ -0.21
LIG3-203ENST00000585370 ABTB2Q8N961 1025 aa13.77□□□□□ -0.21
LIG3-203ENST00000585370 STRN4Q9NRL3 753 aa13.77□□□□□ -0.21
LIG3-203ENST00000585370 TOPAZ1Q8N9V7 1692 aa13.76□□□□□ -0.21
LIG3-203ENST00000585370 SMG6Q86US8 1419 aaKnown RBP13.76□□□□□ -0.21
LIG3-203ENST00000585370 BAG6P46379 1132 aa13.76□□□□□ -0.21
LIG3-203ENST00000585370 EN1Q05925 392 aaPredicted RBP13.76□□□□□ -0.21
LIG3-203ENST00000585370 GGNBP2Q9H3C7 697 aa13.75□□□□□ -0.21
LIG3-203ENST00000585370 NUDCQ9Y266 331 aa13.75□□□□□ -0.21
LIG3-203ENST00000585370 THSD7AQ9UPZ6 1657 aa13.75□□□□□ -0.21
LIG3-203ENST00000585370 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
LIG3-203ENST00000585370 EVA1CP58658 441 aa13.74□□□□□ -0.21
LIG3-203ENST00000585370 NCBP3Q53F19 620 aaKnown RBP13.74□□□□□ -0.21
LIG3-203ENST00000585370 USP35Q9P2H5 1018 aa13.74□□□□□ -0.21
LIG3-203ENST00000585370 PSDA5PKW4 1024 aaPredicted RBP13.73□□□□□ -0.21
LIG3-203ENST00000585370 TNNT2P45379 298 aaPredicted RBP13.73□□□□□ -0.21
LIG3-203ENST00000585370 LARP1Q6PKG0 1096 aaKnown RBP13.73□□□□□ -0.21
LIG3-203ENST00000585370 USP19O94966 1318 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 GCP02774 474 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 ERICH6BQ5W0A0 696 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 BARGINQ6ZT62 677 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.72□□□□□ -0.21
LIG3-203ENST00000585370 COG3Q96JB2 828 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 PNNQ9H307 717 aaKnown RBP13.72□□□□□ -0.21
LIG3-203ENST00000585370 ANKRD26Q9UPS8 1709 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 CAMTA1Q9Y6Y1 1673 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 SSH2Q76I76 1423 aa13.72□□□□□ -0.21
LIG3-203ENST00000585370 CPDO75976 1380 aa13.71□□□□□ -0.21
LIG3-203ENST00000585370 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.21
LIG3-203ENST00000585370 TTC21AQ8NDW8 1320 aa13.71□□□□□ -0.21
LIG3-203ENST00000585370 TRIM37O94972 964 aa13.71□□□□□ -0.21
LIG3-203ENST00000585370 FAM196AQ6ZSG2 479 aa13.71□□□□□ -0.21
LIG3-203ENST00000585370 NRKQ7Z2Y5 1582 aa13.71□□□□□ -0.22
LIG3-203ENST00000585370 TTC21BQ7Z4L5 1316 aa13.7□□□□□ -0.22
LIG3-203ENST00000585370 EZH2Q15910 746 aaKnown RBP13.7□□□□□ -0.22
LIG3-203ENST00000585370 TCP11L2Q8N4U5 519 aa13.7□□□□□ -0.22
LIG3-203ENST00000585370 RUNDC1Q96C34 613 aa13.69□□□□□ -0.22
LIG3-203ENST00000585370 CAMKK2Q96RR4 588 aa13.69□□□□□ -0.22
LIG3-203ENST00000585370 SUPT16HQ9Y5B9 1047 aaKnown RBP13.69□□□□□ -0.22
LIG3-203ENST00000585370 DISP2A7MBM2 1401 aa13.69□□□□□ -0.22
LIG3-203ENST00000585370 RGPD1P0DJD0 1748 aa13.69□□□□□ -0.22
LIG3-203ENST00000585370 KIF20BQ96Q89 1820 aa13.69□□□□□ -0.22
LIG3-203ENST00000585370 AKAP12Q02952 1782 aa13.68□□□□□ -0.22
LIG3-203ENST00000585370 MON2Q7Z3U7 1717 aa13.68□□□□□ -0.22
LIG3-203ENST00000585370 USP6P35125 1406 aa13.68□□□□□ -0.22
LIG3-203ENST00000585370 NLRP6P59044 892 aa13.68□□□□□ -0.22
LIG3-203ENST00000585370 LMO7Q8WWI1 1683 aa13.68□□□□□ -0.22
LIG3-203ENST00000585370 DIAPH1O60610 1272 aaKnown RBP13.67□□□□□ -0.22
LIG3-203ENST00000585370 R3HDM1Q15032 1099 aaKnown RBP13.67□□□□□ -0.22
LIG3-203ENST00000585370 NME9Q86XW9 330 aa13.67□□□□□ -0.22
LIG3-203ENST00000585370 THRAP3Q9Y2W1 955 aaKnown RBP13.67□□□□□ -0.22
LIG3-203ENST00000585370 TNS1Q9HBL0 1735 aaKnown RBP13.67□□□□□ -0.22
LIG3-203ENST00000585370 APBA3O96018 575 aa13.66□□□□□ -0.22
LIG3-203ENST00000585370 POLKQ9UBT6 870 aa13.66□□□□□ -0.22
LIG3-203ENST00000585370 APAF1O14727 1248 aa13.65□□□□□ -0.22
LIG3-203ENST00000585370 U2AF1L5P0DN76 240 aaPredicted RBP13.65□□□□□ -0.22
LIG3-203ENST00000585370 U2AF1Q01081 240 aaKnown RBP eCLIP13.65□□□□□ -0.22
LIG3-203ENST00000585370 GOLGA2Q08379 1002 aa13.65□□□□□ -0.22
LIG3-203ENST00000585370 FKBP8Q14318 412 aa13.65□□□□□ -0.22
LIG3-203ENST00000585370 USP31Q70CQ4 1352 aa13.65□□□□□ -0.22
LIG3-203ENST00000585370 COL5A2P05997 1499 aaPredicted RBP13.65□□□□□ -0.22
LIG3-203ENST00000585370 ZNF521Q96K83 1311 aa13.64□□□□□ -0.23
LIG3-203ENST00000585370 LRP5O75197 1615 aa13.64□□□□□ -0.23
LIG3-203ENST00000585370 ZBTB7CA1YPR0 619 aa13.64□□□□□ -0.23
LIG3-203ENST00000585370 CCDC27Q2M243 656 aa13.64□□□□□ -0.23
LIG3-203ENST00000585370 AXIN2Q9Y2T1 843 aa13.64□□□□□ -0.23
LIG3-203ENST00000585370 SALL2Q9Y467 1007 aaPredicted RBP13.64□□□□□ -0.23
LIG3-203ENST00000585370 FCHSD2O94868 740 aa13.63□□□□□ -0.23
LIG3-203ENST00000585370 CCDC146Q8IYE0 955 aa13.63□□□□□ -0.23
LIG3-203ENST00000585370 CRB1P82279 1406 aa13.63□□□□□ -0.23
LIG3-203ENST00000585370 RNF123Q5XPI4 1314 aa13.63□□□□□ -0.23
LIG3-203ENST00000585370 SLIT3O75094 1523 aa13.62□□□□□ -0.23
LIG3-203ENST00000585370 COL3A1P02461 1466 aaPredicted RBP13.61□□□□□ -0.23
LIG3-203ENST00000585370 PIK3C2AO00443 1686 aa13.61□□□□□ -0.23
LIG3-203ENST00000585370 E9PSI1 815 aa13.61□□□□□ -0.23
LIG3-203ENST00000585370 NEFMP07197 916 aa13.61□□□□□ -0.23
LIG3-203ENST00000585370 ARHGEF25Q86VW2 580 aa13.61□□□□□ -0.23
LIG3-203ENST00000585370 WDR63Q8IWG1 891 aa13.61□□□□□ -0.23
LIG3-203ENST00000585370 OVOS2A0A0J9YW53 1432 aa13.6□□□□□ -0.23
LIG3-203ENST00000585370 U2SURPO15042 1029 aaKnown RBP13.6□□□□□ -0.23
LIG3-203ENST00000585370 SLFN5Q08AF3 891 aa13.6□□□□□ -0.23
LIG3-203ENST00000585370 OVOS2Q6IE36 1432 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms