RNA–Protein interactions for RNA: ENST00000580542.5

ITGB4-207, Transcript of integrin subunit beta 4, humanhuman

TSL 1 (best)

Gene ITGB4, Length 2,798 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-207ENST00000580542 VGLL3A8MV65 326 aa17.15■□□□□ 0.34
ITGB4-207ENST00000580542 APAF1O14727 1248 aa17.15■□□□□ 0.34
ITGB4-207ENST00000580542 TMEM51Q9NW97 253 aa17.15■□□□□ 0.34
ITGB4-207ENST00000580542 PLCD3Q8N3E9 789 aa17.14■□□□□ 0.33
ITGB4-207ENST00000580542 TOPAZ1Q8N9V7 1692 aa17.13■□□□□ 0.33
ITGB4-207ENST00000580542 NASPP49321 788 aaPredicted RBP17.13■□□□□ 0.33
ITGB4-207ENST00000580542 SENP3Q9H4L4 574 aaPredicted RBP17.13■□□□□ 0.33
ITGB4-207ENST00000580542 KIF20AO95235 890 aa17.12■□□□□ 0.33
ITGB4-207ENST00000580542 WAPLQ7Z5K2 1190 aa17.12■□□□□ 0.33
ITGB4-207ENST00000580542 BCAR3O75815 825 aa17.12■□□□□ 0.33
ITGB4-207ENST00000580542 PPP1R9BQ96SB3 815 aa17.12■□□□□ 0.33
ITGB4-207ENST00000580542 PLPPR3Q6T4P5 718 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 TBC1D32Q96NH3 1257 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 DMRT2Q9Y5R5 561 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 MINK1Q8N4C8 1332 aaPredicted RBP17.11■□□□□ 0.33
ITGB4-207ENST00000580542 ATP7BP35670 1465 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 XPCQ01831 940 aaPredicted RBP17.11■□□□□ 0.33
ITGB4-207ENST00000580542 SLC12A5Q9H2X9 1139 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 CABP2Q9NPB3 220 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 ANKRD26Q9UPS8 1709 aa17.11■□□□□ 0.33
ITGB4-207ENST00000580542 GTPBP4Q9BZE4 634 aaKnown RBP17.11■□□□□ 0.33
ITGB4-207ENST00000580542 ANKLE2Q86XL3 938 aa17.1■□□□□ 0.33
ITGB4-207ENST00000580542 VIRMAQ69YN4 1812 aaKnown RBP17.1■□□□□ 0.33
ITGB4-207ENST00000580542 NSD3Q9BZ95 1437 aa17.1■□□□□ 0.33
ITGB4-207ENST00000580542 MAPK8IP3Q9UPT6 1336 aa17.1■□□□□ 0.33
ITGB4-207ENST00000580542 SAFB2Q14151 953 aaKnown RBP eCLIP17.1■□□□□ 0.33
ITGB4-207ENST00000580542 CDK19Q9BWU1 502 aa17.1■□□□□ 0.33
ITGB4-207ENST00000580542 E9PSI1 815 aa17.09■□□□□ 0.33
ITGB4-207ENST00000580542 NWD1Q149M9 1564 aa17.09■□□□□ 0.33
ITGB4-207ENST00000580542 WASLO00401 505 aaPredicted RBP17.08■□□□□ 0.33
ITGB4-207ENST00000580542 LETM1O95202 739 aaPredicted RBP17.08■□□□□ 0.33
ITGB4-207ENST00000580542 ZNF830Q96NB3 372 aaPredicted RBP17.08■□□□□ 0.33
ITGB4-207ENST00000580542 SLC26A8Q96RN1 970 aa17.08■□□□□ 0.33
ITGB4-207ENST00000580542 AKAP12Q02952 1782 aa17.08■□□□□ 0.33
ITGB4-207ENST00000580542 NSD2O96028 1365 aa17.08■□□□□ 0.32
ITGB4-207ENST00000580542 A0A1W2PP64 1363 aa17.08■□□□□ 0.32
ITGB4-207ENST00000580542 MON2Q7Z3U7 1717 aa17.07■□□□□ 0.32
ITGB4-207ENST00000580542 CBX1P83916 185 aa17.07■□□□□ 0.32
ITGB4-207ENST00000580542 CDC42BPGQ6DT37 1551 aa17.06■□□□□ 0.32
ITGB4-207ENST00000580542 NPHP4O75161 1426 aaPredicted RBP17.06■□□□□ 0.32
ITGB4-207ENST00000580542 IGHDP01880 384 aa17.06■□□□□ 0.32
ITGB4-207ENST00000580542 CPSF1Q10570 1443 aaKnown RBP17.06■□□□□ 0.32
ITGB4-207ENST00000580542 CDK11BP21127 795 aaKnown RBP17.06■□□□□ 0.32
ITGB4-207ENST00000580542 SRPK2P78362 688 aaKnown RBP17.06■□□□□ 0.32
ITGB4-207ENST00000580542 AMOTL2Q9Y2J4 779 aa17.06■□□□□ 0.32
ITGB4-207ENST00000580542 KIF20BQ96Q89 1820 aa17.05■□□□□ 0.32
ITGB4-207ENST00000580542 SKOR2Q2VWA4 1001 aaPredicted RBP17.05■□□□□ 0.32
ITGB4-207ENST00000580542 CSPP1Q1MSJ5 1256 aa17.05■□□□□ 0.32
ITGB4-207ENST00000580542 ZNF500O60304 480 aaPredicted RBP17.04■□□□□ 0.32
ITGB4-207ENST00000580542 SASS6Q6UVJ0 657 aa17.04■□□□□ 0.32
ITGB4-207ENST00000580542 POLR3AO14802 1390 aaPredicted RBP17.03■□□□□ 0.32
ITGB4-207ENST00000580542 NGEFQ8N5V2 710 aa17.03■□□□□ 0.32
ITGB4-207ENST00000580542 ITSN1Q15811 1721 aa17.03■□□□□ 0.32
ITGB4-207ENST00000580542 GBP4Q96PP9 640 aa17.03■□□□□ 0.32
ITGB4-207ENST00000580542 NOL7Q9UMY1 257 aaKnown RBP17.03■□□□□ 0.32
ITGB4-207ENST00000580542 NRKQ7Z2Y5 1582 aa17.02■□□□□ 0.32
ITGB4-207ENST00000580542 FMN2Q9NZ56 1722 aa17.02■□□□□ 0.32
ITGB4-207ENST00000580542 PDE3AQ14432 1141 aa17.02■□□□□ 0.31
ITGB4-207ENST00000580542 SHPRHQ149N8 1683 aa17.02■□□□□ 0.31
ITGB4-207ENST00000580542 CGNL1Q0VF96 1302 aa17.02■□□□□ 0.31
ITGB4-207ENST00000580542 NALCNQ8IZF0 1738 aa17.01■□□□□ 0.31
ITGB4-207ENST00000580542 KDM4FA0A1W2PPD8 638 aa17.01■□□□□ 0.31
ITGB4-207ENST00000580542 WWC1Q8IX03 1113 aa17.01■□□□□ 0.31
ITGB4-207ENST00000580542 TERF2IPQ9NYB0 399 aa17.01■□□□□ 0.31
ITGB4-207ENST00000580542 PPIP5K1Q6PFW1 1433 aa17.01■□□□□ 0.31
ITGB4-207ENST00000580542 HS1BP3Q53T59 392 aa17■□□□□ 0.31
ITGB4-207ENST00000580542 HSCBQ8IWL3 235 aa17■□□□□ 0.31
ITGB4-207ENST00000580542 TNPO1Q92973 898 aaKnown RBP17■□□□□ 0.31
ITGB4-207ENST00000580542 DNTTIP2Q5QJE6 756 aaKnown RBP17■□□□□ 0.31
ITGB4-207ENST00000580542 TAF3Q5VWG9 929 aa17■□□□□ 0.31
ITGB4-207ENST00000580542 PANK1Q8TE04 598 aa17■□□□□ 0.31
ITGB4-207ENST00000580542 PRR36Q9H6K5 1346 aa17■□□□□ 0.31
ITGB4-207ENST00000580542 CLUAP1Q96AJ1 413 aa16.99■□□□□ 0.31
ITGB4-207ENST00000580542 FTSJ3Q8IY81 847 aaKnown RBP16.99■□□□□ 0.31
ITGB4-207ENST00000580542 CABP1Q9NZU7 370 aa16.99■□□□□ 0.31
ITGB4-207ENST00000580542 CGNQ9P2M7 1197 aaKnown RBP16.99■□□□□ 0.31
ITGB4-207ENST00000580542 COG6Q9Y2V7 657 aa16.99■□□□□ 0.31
ITGB4-207ENST00000580542 ANKARQ7Z5J8 1434 aa16.98■□□□□ 0.31
ITGB4-207ENST00000580542 KCNA6P17658 529 aa16.98■□□□□ 0.31
ITGB4-207ENST00000580542 NUDT16Q96DE0 195 aaKnown RBP16.98■□□□□ 0.31
ITGB4-207ENST00000580542 CCDC61Q9Y6R9 512 aa16.98■□□□□ 0.31
ITGB4-207ENST00000580542 IQSEC2Q5JU85 1478 aa16.97■□□□□ 0.31
ITGB4-207ENST00000580542 EDC4Q6P2E9 1401 aaKnown RBP16.97■□□□□ 0.31
ITGB4-207ENST00000580542 ZBTB22O15209 634 aa16.97■□□□□ 0.31
ITGB4-207ENST00000580542 PTMSP20962 102 aa16.97■□□□□ 0.31
ITGB4-207ENST00000580542 LMTK3Q96Q04 1460 aa16.97■□□□□ 0.31
ITGB4-207ENST00000580542 C22orf23Q9BZE7 217 aa16.96■□□□□ 0.31
ITGB4-207ENST00000580542 HDGFL2Q7Z4V5 671 aaPredicted RBP16.96■□□□□ 0.31
ITGB4-207ENST00000580542 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.96■□□□□ 0.31
ITGB4-207ENST00000580542 RGPD8O14715 1765 aaPredicted RBP16.96■□□□□ 0.31
ITGB4-207ENST00000580542 ZNF692Q9BU19 519 aaPredicted RBP16.95■□□□□ 0.3
ITGB4-207ENST00000580542 PLEKHG3A1L390 1219 aa16.95■□□□□ 0.3
ITGB4-207ENST00000580542 ZKSCAN5Q9Y2L8 839 aa16.95■□□□□ 0.3
ITGB4-207ENST00000580542 RRP7AQ9Y3A4 280 aaKnown RBP16.94■□□□□ 0.3
ITGB4-207ENST00000580542 MFAP1P55081 439 aaKnown RBP16.94■□□□□ 0.3
ITGB4-207ENST00000580542 MORC1Q86VD1 984 aa16.94■□□□□ 0.3
ITGB4-207ENST00000580542 STRCQ7RTU9 1775 aa16.94■□□□□ 0.3
ITGB4-207ENST00000580542 ZBTB7CA1YPR0 619 aa16.94■□□□□ 0.3
ITGB4-207ENST00000580542 RARSP54136 660 aaKnown RBP16.94■□□□□ 0.3
ITGB4-207ENST00000580542 MAPK8IP2Q13387 824 aaPredicted RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms