RNA–Protein interactions for RNA: ENST00000573852.5

SCARF1-206, Transcript of scavenger receptor class F member 1, humanhuman

TSL 1 (best)

Gene SCARF1, Length 2,698 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-206ENST00000573852 KIF2CQ99661 725 aa23.87■■□□□ 1.41
SCARF1-206ENST00000573852 GCC1Q96CN9 775 aa23.87■■□□□ 1.41
SCARF1-206ENST00000573852 PTCH1Q13635 1447 aa23.87■■□□□ 1.41
SCARF1-206ENST00000573852 SIRT2Q8IXJ6 389 aa23.87■■□□□ 1.41
SCARF1-206ENST00000573852 OSCARQ8IYS5 282 aa23.87■■□□□ 1.41
SCARF1-206ENST00000573852 EMILIN1Q9Y6C2 1016 aa23.86■■□□□ 1.41
SCARF1-206ENST00000573852 DDX11L8A8MPP1 907 aa23.85■■□□□ 1.41
SCARF1-206ENST00000573852 MBIPQ9NS73 344 aa23.85■■□□□ 1.41
SCARF1-206ENST00000573852 GNAI1P63096 354 aa23.84■■□□□ 1.41
SCARF1-206ENST00000573852 IFT57Q9NWB7 429 aa23.84■■□□□ 1.41
SCARF1-206ENST00000573852 ZNF853P0CG23 659 aa23.84■■□□□ 1.41
SCARF1-206ENST00000573852 HSP90AB1P08238 724 aaKnown RBP23.83■■□□□ 1.41
SCARF1-206ENST00000573852 IL13P35225 146 aa23.83■■□□□ 1.41
SCARF1-206ENST00000573852 ATP7BP35670 1465 aa23.83■■□□□ 1.41
SCARF1-206ENST00000573852 CALD1Q05682 793 aaKnown RBP23.83■■□□□ 1.4
SCARF1-206ENST00000573852 TBC1D9Q6ZT07 1266 aa23.83■■□□□ 1.4
SCARF1-206ENST00000573852 TNPO1Q92973 898 aaKnown RBP23.83■■□□□ 1.4
SCARF1-206ENST00000573852 CHMP4BQ9H444 224 aaKnown RBP23.83■■□□□ 1.4
SCARF1-206ENST00000573852 STAG3Q9UJ98 1225 aa23.83■■□□□ 1.4
SCARF1-206ENST00000573852 ABCC4O15439 1325 aa23.83■■□□□ 1.4
SCARF1-206ENST00000573852 EIF5BO60841 1220 aaKnown RBP23.82■■□□□ 1.4
SCARF1-206ENST00000573852 CD2BP2O95400 341 aaKnown RBP23.82■■□□□ 1.4
SCARF1-206ENST00000573852 ZRANB1Q9UGI0 708 aa23.8■■□□□ 1.4
SCARF1-206ENST00000573852 TWISTNBQ3B726 338 aaPredicted RBP23.8■■□□□ 1.4
SCARF1-206ENST00000573852 C8orf58Q8NAV2 365 aa23.8■■□□□ 1.4
SCARF1-206ENST00000573852 NME9Q86XW9 330 aa23.79■■□□□ 1.4
SCARF1-206ENST00000573852 CIZ1Q9ULV3 898 aaPredicted RBP23.79■■□□□ 1.4
SCARF1-206ENST00000573852 MRE11P49959 708 aa23.78■■□□□ 1.4
SCARF1-206ENST00000573852 RBM42Q9BTD8 480 aaKnown RBP23.78■■□□□ 1.4
SCARF1-206ENST00000573852 RAB3GAP1Q15042 981 aa23.77■■□□□ 1.4
SCARF1-206ENST00000573852 DLC1Q96QB1 1528 aa23.77■■□□□ 1.4
SCARF1-206ENST00000573852 FOXD4L1Q9NU39 408 aa23.77■■□□□ 1.4
SCARF1-206ENST00000573852 DLG5Q8TDM6 1919 aa23.77■■□□□ 1.39
SCARF1-206ENST00000573852 CFAP44Q96MT7 982 aa23.77■■□□□ 1.39
SCARF1-206ENST00000573852 FAM83GA6ND36 823 aa23.76■■□□□ 1.39
SCARF1-206ENST00000573852 CPSF1Q10570 1443 aaKnown RBP23.76■■□□□ 1.39
SCARF1-206ENST00000573852 GRPEL1Q9HAV7 217 aa23.75■■□□□ 1.39
SCARF1-206ENST00000573852 CDK12Q9NYV4 1490 aaPredicted RBP23.75■■□□□ 1.39
SCARF1-206ENST00000573852 EDC4Q6P2E9 1401 aaKnown RBP23.75■■□□□ 1.39
SCARF1-206ENST00000573852 K7ELQ4 463 aaPredicted RBP23.74■■□□□ 1.39
SCARF1-206ENST00000573852 DCTN1Q14203 1278 aa23.73■■□□□ 1.39
SCARF1-206ENST00000573852 GBP4Q96PP9 640 aa23.73■■□□□ 1.39
SCARF1-206ENST00000573852 API5Q9BZZ5 524 aaKnown RBP23.73■■□□□ 1.39
SCARF1-206ENST00000573852 HSP90AA1P07900 732 aaKnown RBP23.73■■□□□ 1.39
SCARF1-206ENST00000573852 GSPT1P15170 499 aaKnown RBP23.73■■□□□ 1.39
SCARF1-206ENST00000573852 RRS1Q15050 365 aaKnown RBP23.73■■□□□ 1.39
SCARF1-206ENST00000573852 RIMBP3CA6NJZ7 1639 aa23.73■■□□□ 1.39
SCARF1-206ENST00000573852 RIMBP3BA6NNM3 1639 aa23.73■■□□□ 1.39
SCARF1-206ENST00000573852 RIMBP3Q9UFD9 1639 aa23.73■■□□□ 1.39
SCARF1-206ENST00000573852 SETD1AO15047 1707 aaKnown RBP23.72■■□□□ 1.39
SCARF1-206ENST00000573852 KNDC1Q76NI1 1749 aa23.72■■□□□ 1.39
SCARF1-206ENST00000573852 CDC45O75419 566 aa23.72■■□□□ 1.39
SCARF1-206ENST00000573852 WASLO00401 505 aaPredicted RBP23.71■■□□□ 1.39
SCARF1-206ENST00000573852 AATKQ6ZMQ8 1374 aa23.71■■□□□ 1.39
SCARF1-206ENST00000573852 RIMS2Q9UQ26 1411 aa23.71■■□□□ 1.39
SCARF1-206ENST00000573852 A2ML1A8K2U0 1454 aa23.71■■□□□ 1.39
SCARF1-206ENST00000573852 LMOD3Q0VAK6 560 aa23.71■■□□□ 1.39
SCARF1-206ENST00000573852 PLEKHM2Q8IWE5 1019 aa23.71■■□□□ 1.39
SCARF1-206ENST00000573852 GAS2L2Q8NHY3 880 aa23.7■■□□□ 1.39
SCARF1-206ENST00000573852 UBE2Q2Q8WVN8 375 aa23.7■■□□□ 1.39
SCARF1-206ENST00000573852 NCKAP5LQ9HCH0 1330 aa23.7■■□□□ 1.39
SCARF1-206ENST00000573852 GAS2L3Q86XJ1 694 aa23.7■■□□□ 1.38
SCARF1-206ENST00000573852 ISY1Q9ULR0 285 aaKnown RBP23.69■■□□□ 1.38
SCARF1-206ENST00000573852 REREQ9P2R6 1566 aa23.68■■□□□ 1.38
SCARF1-206ENST00000573852 CPS1P31327 1500 aa23.68■■□□□ 1.38
SCARF1-206ENST00000573852 COG3Q96JB2 828 aa23.68■■□□□ 1.38
SCARF1-206ENST00000573852 DCTPP1Q9H773 170 aa23.68■■□□□ 1.38
SCARF1-206ENST00000573852 SSFA2P28290 1259 aa23.67■■□□□ 1.38
SCARF1-206ENST00000573852 C16orf71Q8IYS4 520 aaPredicted RBP23.67■■□□□ 1.38
SCARF1-206ENST00000573852 NUDT16Q96DE0 195 aaKnown RBP23.67■■□□□ 1.38
SCARF1-206ENST00000573852 KIF24Q5T7B8 1368 aa23.66■■□□□ 1.38
SCARF1-206ENST00000573852 CLCN1P35523 988 aa23.66■■□□□ 1.38
SCARF1-206ENST00000573852 SKOR2Q2VWA4 1001 aaPredicted RBP23.66■■□□□ 1.38
SCARF1-206ENST00000573852 INTS3Q68E01 1043 aaKnown RBP23.65■■□□□ 1.38
SCARF1-206ENST00000573852 TXNDC2Q86VQ3 553 aa23.65■■□□□ 1.38
SCARF1-206ENST00000573852 KRT24Q2M2I5 525 aa23.64■■□□□ 1.38
SCARF1-206ENST00000573852 TTC22Q5TAA0 569 aa23.64■■□□□ 1.38
SCARF1-206ENST00000573852 METP08581 1390 aa23.64■■□□□ 1.37
SCARF1-206ENST00000573852 AEBP1Q8IUX7 1158 aa23.63■■□□□ 1.37
SCARF1-206ENST00000573852 OTUD7AQ8TE49 926 aaPredicted RBP23.62■■□□□ 1.37
SCARF1-206ENST00000573852 PTMSP20962 102 aa23.62■■□□□ 1.37
SCARF1-206ENST00000573852 ANKRD44Q8N8A2 993 aa23.62■■□□□ 1.37
SCARF1-206ENST00000573852 CCDC61Q9Y6R9 512 aa23.62■■□□□ 1.37
SCARF1-206ENST00000573852 MON2Q7Z3U7 1717 aa23.61■■□□□ 1.37
SCARF1-206ENST00000573852 ATP10DQ9P241 1426 aa23.61■■□□□ 1.37
SCARF1-206ENST00000573852 NRXN3Q9Y4C0 1643 aa23.61■■□□□ 1.37
SCARF1-206ENST00000573852 RGS12O14924 1447 aa23.61■■□□□ 1.37
SCARF1-206ENST00000573852 CLEC17AQ6ZS10 378 aa23.6■■□□□ 1.37
SCARF1-206ENST00000573852 USP26Q9BXU7 913 aa23.6■■□□□ 1.37
SCARF1-206ENST00000573852 AK9Q5TCS8 1911 aa23.6■■□□□ 1.37
SCARF1-206ENST00000573852 RABEP1Q15276 862 aa23.59■■□□□ 1.37
SCARF1-206ENST00000573852 SPATA31D1Q6ZQQ2 1576 aa23.59■■□□□ 1.37
SCARF1-206ENST00000573852 CEP85Q6P2H3 762 aa23.58■■□□□ 1.37
SCARF1-206ENST00000573852 C3P01024 1663 aa23.58■■□□□ 1.37
SCARF1-206ENST00000573852 EIF4A2Q14240 407 aaKnown RBP23.58■■□□□ 1.37
SCARF1-206ENST00000573852 ERBB4Q15303 1308 aa23.58■■□□□ 1.37
SCARF1-206ENST00000573852 SULT6B1Q6IMI4 303 aa23.58■■□□□ 1.37
SCARF1-206ENST00000573852 BAG4O95429 457 aaKnown RBP23.57■■□□□ 1.36
SCARF1-206ENST00000573852 CHL1O00533 1208 aa23.57■■□□□ 1.36
SCARF1-206ENST00000573852 SMARCA5O60264 1052 aaPredicted RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms