RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 WASLO00401 505 aaPredicted RBP9.07□□□□□ -0.96
NUP88-206ENST00000573169 ZNF579Q8NAF0 562 aaKnown RBP9.07□□□□□ -0.96
NUP88-206ENST00000573169 SBNO1A3KN83 1393 aa9.07□□□□□ -0.96
NUP88-206ENST00000573169 ADGRB2O60241 1585 aa9.07□□□□□ -0.96
NUP88-206ENST00000573169 ANKARQ7Z5J8 1434 aa9.06□□□□□ -0.96
NUP88-206ENST00000573169 FAM83GA6ND36 823 aa9.06□□□□□ -0.96
NUP88-206ENST00000573169 PCDHB13Q9Y5F0 798 aa9.06□□□□□ -0.96
NUP88-206ENST00000573169 PDAP1Q13442 181 aaKnown RBP9.05□□□□□ -0.96
NUP88-206ENST00000573169 CCDC9Q9Y3X0 531 aaKnown RBP9.05□□□□□ -0.96
NUP88-206ENST00000573169 ABCA3Q99758 1704 aa9.05□□□□□ -0.96
NUP88-206ENST00000573169 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.05□□□□□ -0.96
NUP88-206ENST00000573169 TULP4Q9NRJ4 1543 aa9.05□□□□□ -0.96
NUP88-206ENST00000573169 ARHGEF10O15013 1369 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 VPS72Q15906 364 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 NBPF1Q3BBV0 1214 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 SEPT12Q8IYM1 358 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 SPRYD3Q8NCJ5 442 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 NGDNQ8NEJ9 315 aaKnown RBP9.04□□□□□ -0.96
NUP88-206ENST00000573169 NUDT16Q96DE0 195 aaKnown RBP9.04□□□□□ -0.96
NUP88-206ENST00000573169 SIN3AQ96ST3 1273 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 TRPM3Q9HCF6 1732 aaPredicted RBP9.04□□□□□ -0.96
NUP88-206ENST00000573169 PLCH1Q4KWH8 1693 aa9.04□□□□□ -0.96
NUP88-206ENST00000573169 ARHGEF28Q8N1W1 1705 aaKnown RBP9.03□□□□□ -0.96
NUP88-206ENST00000573169 GPRASP1Q5JY77 1395 aa9.03□□□□□ -0.96
NUP88-206ENST00000573169 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.03□□□□□ -0.96
NUP88-206ENST00000573169 KIF12Q96FN5 646 aa9.03□□□□□ -0.96
NUP88-206ENST00000573169 ZFP91Q96JP5 570 aaPredicted RBP9.03□□□□□ -0.96
NUP88-206ENST00000573169 CDK19Q9BWU1 502 aa9.03□□□□□ -0.96
NUP88-206ENST00000573169 BTG4Q9NY30 223 aa9.03□□□□□ -0.96
NUP88-206ENST00000573169 STK24Q9Y6E0 443 aa9.03□□□□□ -0.96
NUP88-206ENST00000573169 ALS2Q96Q42 1657 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 NUTM2GQ5VZR2 741 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 PAXIP1Q6ZW49 1069 aaPredicted RBP9.02□□□□□ -0.97
NUP88-206ENST00000573169 DEFB132Q7Z7B7 95 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 STAC3Q96MF2 364 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 CFAP44Q96MT7 982 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 BCL11BQ9C0K0 894 aaPredicted RBP9.02□□□□□ -0.97
NUP88-206ENST00000573169 BRWD3Q6RI45 1802 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 ATP7BP35670 1465 aa9.02□□□□□ -0.97
NUP88-206ENST00000573169 EIF3AQ14152 1382 aaKnown RBP9.01□□□□□ -0.97
NUP88-206ENST00000573169 A0A0G2JS52 829 aa9.01□□□□□ -0.97
NUP88-206ENST00000573169 MAP3K13O43283 966 aa9.01□□□□□ -0.97
NUP88-206ENST00000573169 CLCN6P51797 869 aa9.01□□□□□ -0.97
NUP88-206ENST00000573169 FAM98CQ17RN3 349 aaKnown RBP9.01□□□□□ -0.97
NUP88-206ENST00000573169 RYDENQ9NUL5 291 aaKnown RBP9.01□□□□□ -0.97
NUP88-206ENST00000573169 PCDHB8Q9UN66 801 aa9.01□□□□□ -0.97
NUP88-206ENST00000573169 NWD2Q9ULI1 1742 aa9□□□□□ -0.97
NUP88-206ENST00000573169 ONECUT3O60422 494 aaPredicted RBP9□□□□□ -0.97
NUP88-206ENST00000573169 CHRNA2Q15822 529 aa9□□□□□ -0.97
NUP88-206ENST00000573169 FAM182BQ5T319 152 aa9□□□□□ -0.97
NUP88-206ENST00000573169 ACEP12821 1306 aa9□□□□□ -0.97
NUP88-206ENST00000573169 NRAPQ86VF7 1730 aa9□□□□□ -0.97
NUP88-206ENST00000573169 TONSLQ96HA7 1378 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 EP400Q96L91 3159 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 PSEN1P49768 467 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 ZC3H6P61129 1189 aaKnown RBP8.99□□□□□ -0.97
NUP88-206ENST00000573169 NBPF8Q3BBV2 869 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 KRT27Q7Z3Y8 459 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 CCDC125Q86Z20 511 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 PRDM11Q9NQV5 511 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 CRYBG1Q9Y4K1 1723 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 KIAA0232Q92628 1395 aa8.99□□□□□ -0.97
NUP88-206ENST00000573169 BLMP54132 1417 aaPredicted RBP8.98□□□□□ -0.97
NUP88-206ENST00000573169 IFNL1Q8IU54 200 aa8.98□□□□□ -0.97
NUP88-206ENST00000573169 L3MBTL2Q969R5 705 aa8.98□□□□□ -0.97
NUP88-206ENST00000573169 PHF12Q96QT6 1004 aa8.98□□□□□ -0.97
NUP88-206ENST00000573169 CABP2Q9NPB3 220 aa8.98□□□□□ -0.97
NUP88-206ENST00000573169 PPP4R2Q9NY27 417 aa8.98□□□□□ -0.97
NUP88-206ENST00000573169 COL14A1Q05707 1796 aaKnown RBP8.98□□□□□ -0.97
NUP88-206ENST00000573169 PLEKHG3A1L390 1219 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 SRPK2P78362 688 aaKnown RBP8.97□□□□□ -0.97
NUP88-206ENST00000573169 STRN4Q9NRL3 753 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 SPATA31A5Q5VU36 1347 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 SPATA31A7Q8IWB4 1347 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 POLR3AO14802 1390 aaPredicted RBP8.97□□□□□ -0.97
NUP88-206ENST00000573169 ITSN1Q15811 1721 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 KIAA1210Q9ULL0 1709 aa8.97□□□□□ -0.97
NUP88-206ENST00000573169 PHRF1Q9P1Y6 1649 aaKnown RBP8.96□□□□□ -0.98
NUP88-206ENST00000573169 SF3B2Q13435 895 aaKnown RBP8.96□□□□□ -0.98
NUP88-206ENST00000573169 LCE2DQ5TA82 110 aaPredicted RBP8.96□□□□□ -0.98
NUP88-206ENST00000573169 TOPAZ1Q8N9V7 1692 aa8.96□□□□□ -0.98
NUP88-206ENST00000573169 CENPJQ9HC77 1338 aaPredicted RBP8.96□□□□□ -0.98
NUP88-206ENST00000573169 ABTB2Q8N961 1025 aa8.95□□□□□ -0.98
NUP88-206ENST00000573169 USP35Q9P2H5 1018 aa8.95□□□□□ -0.98
NUP88-206ENST00000573169 PPIP5K1Q6PFW1 1433 aa8.95□□□□□ -0.98
NUP88-206ENST00000573169 CABP1Q9NZU7 370 aa8.94□□□□□ -0.98
NUP88-206ENST00000573169 SPATA31A1Q5TZJ5 1347 aa8.94□□□□□ -0.98
NUP88-206ENST00000573169 ZBTB7CA1YPR0 619 aa8.93□□□□□ -0.98
NUP88-206ENST00000573169 PSDA5PKW4 1024 aaPredicted RBP8.93□□□□□ -0.98
NUP88-206ENST00000573169 EVA1CP58658 441 aa8.93□□□□□ -0.98
NUP88-206ENST00000573169 EN1Q05925 392 aaPredicted RBP8.93□□□□□ -0.98
NUP88-206ENST00000573169 LARP1Q6PKG0 1096 aaKnown RBP8.93□□□□□ -0.98
NUP88-206ENST00000573169 RNF123Q5XPI4 1314 aa8.93□□□□□ -0.98
NUP88-206ENST00000573169 QRICH2Q9H0J4 1663 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 THSD7AQ9UPZ6 1657 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 CAMTA1Q9Y6Y1 1673 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 NRKQ7Z2Y5 1582 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 USP19O94966 1318 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 WASHC2AQ641Q2 1341 aa8.92□□□□□ -0.98
NUP88-206ENST00000573169 ZBED9Q6R2W3 1325 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms