RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 TRPM3Q9HCF6 1732 aaPredicted RBP11.48□□□□□ -0.57
VPS53-214ENST00000572607 CRYBG1Q9Y4K1 1723 aa11.48□□□□□ -0.57
VPS53-214ENST00000572607 TNS1Q9HBL0 1735 aaKnown RBP11.47□□□□□ -0.57
VPS53-214ENST00000572607 QRICH2Q9H0J4 1663 aa11.47□□□□□ -0.57
VPS53-214ENST00000572607 ONECUT3O60422 494 aaPredicted RBP11.47□□□□□ -0.57
VPS53-214ENST00000572607 PPIP5K1Q6PFW1 1433 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 ACEP12821 1306 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 CLSPNQ9HAW4 1339 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 PLEKHG3A1L390 1219 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 TIE1P35590 1138 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 NUBP1P53384 320 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 CABLES1Q8TDN4 633 aa11.46□□□□□ -0.57
VPS53-214ENST00000572607 BMP2KQ9NSY1 1161 aaPredicted RBP11.46□□□□□ -0.57
VPS53-214ENST00000572607 TRPC6Q9Y210 931 aa11.45□□□□□ -0.58
VPS53-214ENST00000572607 ALS2Q96Q42 1657 aa11.45□□□□□ -0.58
VPS53-214ENST00000572607 POLR3AO14802 1390 aaPredicted RBP11.44□□□□□ -0.58
VPS53-214ENST00000572607 THSD7AQ9UPZ6 1657 aa11.44□□□□□ -0.58
VPS53-214ENST00000572607 POTEJP0CG39 1038 aa11.44□□□□□ -0.58
VPS53-214ENST00000572607 VPS72Q15906 364 aa11.44□□□□□ -0.58
VPS53-214ENST00000572607 SEPT12Q8IYM1 358 aa11.44□□□□□ -0.58
VPS53-214ENST00000572607 SGIP1Q9BQI5 828 aa11.44□□□□□ -0.58
VPS53-214ENST00000572607 RGPD1P0DJD0 1748 aa11.43□□□□□ -0.58
VPS53-214ENST00000572607 TOPAZ1Q8N9V7 1692 aa11.43□□□□□ -0.58
VPS53-214ENST00000572607 CABP1Q9NZU7 370 aa11.43□□□□□ -0.58
VPS53-214ENST00000572607 TIMELESSQ9UNS1 1208 aa11.43□□□□□ -0.58
VPS53-214ENST00000572607 BRD4O60885 1362 aaPredicted RBP11.42□□□□□ -0.58
VPS53-214ENST00000572607 SBNO2Q9Y2G9 1366 aa11.42□□□□□ -0.58
VPS53-214ENST00000572607 SLC24A1O60721 1099 aa11.42□□□□□ -0.58
VPS53-214ENST00000572607 MAMSTRQ6ZN01 415 aa11.42□□□□□ -0.58
VPS53-214ENST00000572607 ABTB2Q8N961 1025 aa11.42□□□□□ -0.58
VPS53-214ENST00000572607 CCER1Q8TC90 406 aaPredicted RBP11.42□□□□□ -0.58
VPS53-214ENST00000572607 CCDC9Q9Y3X0 531 aaKnown RBP11.41□□□□□ -0.58
VPS53-214ENST00000572607 PSDA5PKW4 1024 aaPredicted RBP11.4□□□□□ -0.58
VPS53-214ENST00000572607 NUTM2GQ5VZR2 741 aa11.4□□□□□ -0.58
VPS53-214ENST00000572607 PRDM11Q9NQV5 511 aa11.4□□□□□ -0.58
VPS53-214ENST00000572607 COL14A1Q05707 1796 aaKnown RBP11.4□□□□□ -0.58
VPS53-214ENST00000572607 FAM83GA6ND36 823 aa11.39□□□□□ -0.59
VPS53-214ENST00000572607 USP6P35125 1406 aa11.39□□□□□ -0.59
VPS53-214ENST00000572607 KRT27Q7Z3Y8 459 aa11.39□□□□□ -0.59
VPS53-214ENST00000572607 NLRP13Q86W25 1043 aa11.39□□□□□ -0.59
VPS53-214ENST00000572607 DISP2A7MBM2 1401 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 POTEFA5A3E0 1075 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 TMC1Q8TDI8 760 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 BTG4Q9NY30 223 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 PCDHB13Q9Y5F0 798 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 RREB1Q92766 1687 aa11.38□□□□□ -0.59
VPS53-214ENST00000572607 ST20-MTHFSA0A0A6YYL1 179 aa11.37□□□□□ -0.59
VPS53-214ENST00000572607 TTLL13PA6NNM8 815 aa11.37□□□□□ -0.59
VPS53-214ENST00000572607 NUP188Q5SRE5 1749 aa11.36□□□□□ -0.59
VPS53-214ENST00000572607 NLRP6P59044 892 aa11.36□□□□□ -0.59
VPS53-214ENST00000572607 ZC3H6P61129 1189 aaKnown RBP11.36□□□□□ -0.59
VPS53-214ENST00000572607 HDGFL2Q7Z4V5 671 aaPredicted RBP11.36□□□□□ -0.59
VPS53-214ENST00000572607 FAM212AQ96EL1 285 aa11.36□□□□□ -0.59
VPS53-214ENST00000572607 PUS7Q96PZ0 661 aaKnown RBP11.36□□□□□ -0.59
VPS53-214ENST00000572607 KIAA0232Q92628 1395 aa11.36□□□□□ -0.59
VPS53-214ENST00000572607 USP47Q96K76 1375 aa11.36□□□□□ -0.59
VPS53-214ENST00000572607 PHRF1Q9P1Y6 1649 aaKnown RBP11.35□□□□□ -0.59
VPS53-214ENST00000572607 A0A0G2JS52 829 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 MYT1Q01538 1121 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 FAM182BQ5T319 152 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 TERF2IPQ9NYB0 399 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 FBXO3Q9UK99 471 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 KTN1Q86UP2 1357 aaKnown RBP11.35□□□□□ -0.59
VPS53-214ENST00000572607 USP19O94966 1318 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 TTC21AQ8NDW8 1320 aa11.35□□□□□ -0.59
VPS53-214ENST00000572607 ZBTB7CA1YPR0 619 aa11.34□□□□□ -0.59
VPS53-214ENST00000572607 EVA1CP58658 441 aa11.34□□□□□ -0.59
VPS53-214ENST00000572607 TMF1P82094 1093 aa11.34□□□□□ -0.59
VPS53-214ENST00000572607 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
VPS53-214ENST00000572607 CHRNA2Q15822 529 aa11.34□□□□□ -0.59
VPS53-214ENST00000572607 FAM98CQ17RN3 349 aaKnown RBP11.34□□□□□ -0.59
VPS53-214ENST00000572607 TTC21BQ7Z4L5 1316 aa11.34□□□□□ -0.59
VPS53-214ENST00000572607 NINLQ9Y2I6 1382 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 GCP02774 474 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 SF3B2Q13435 895 aaKnown RBP11.33□□□□□ -0.6
VPS53-214ENST00000572607 CDCA8Q53HL2 280 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 KCNH5Q8NCM2 988 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 SCUBE2Q9NQ36 999 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 STRN4Q9NRL3 753 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 CPSF1Q10570 1443 aaKnown RBP11.33□□□□□ -0.6
VPS53-214ENST00000572607 SSH2Q76I76 1423 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 SPATA31A5Q5VU36 1347 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 SPATA31A7Q8IWB4 1347 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 NRKQ7Z2Y5 1582 aa11.33□□□□□ -0.6
VPS53-214ENST00000572607 CPDO75976 1380 aa11.32□□□□□ -0.6
VPS53-214ENST00000572607 BAG6P46379 1132 aa11.32□□□□□ -0.6
VPS53-214ENST00000572607 TESK2Q96S53 571 aa11.32□□□□□ -0.6
VPS53-214ENST00000572607 R3HDM1Q15032 1099 aaKnown RBP11.31□□□□□ -0.6
VPS53-214ENST00000572607 IFNL1Q8IU54 200 aa11.31□□□□□ -0.6
VPS53-214ENST00000572607 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.31□□□□□ -0.6
VPS53-214ENST00000572607 SLC12A5Q9H2X9 1139 aa11.31□□□□□ -0.6
VPS53-214ENST00000572607 EZH2Q15910 746 aaKnown RBP11.3□□□□□ -0.6
VPS53-214ENST00000572607 IER5LQ5T953 404 aa11.3□□□□□ -0.6
VPS53-214ENST00000572607 CAMKK2Q96RR4 588 aa11.3□□□□□ -0.6
VPS53-214ENST00000572607 LMO7Q8WWI1 1683 aa11.3□□□□□ -0.6
VPS53-214ENST00000572607 SLIT3O75094 1523 aa11.3□□□□□ -0.6
VPS53-214ENST00000572607 EDC4Q6P2E9 1401 aaKnown RBP11.29□□□□□ -0.6
VPS53-214ENST00000572607 POTEMA6NI47 508 aa11.29□□□□□ -0.6
VPS53-214ENST00000572607 SOX12O15370 315 aa11.29□□□□□ -0.6
VPS53-214ENST00000572607 SEC24BO95487 1268 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms