RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 SBNO1A3KN83 1393 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 RALBP1Q15311 655 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 KRT28Q7Z3Y7 464 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 ZNF467Q7Z7K2 595 aaPredicted RBP8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 NME9Q86XW9 330 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 HS6ST3Q8IZP7 471 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 GGNBP2Q9H3C7 697 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 KIF20BQ96Q89 1820 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 NHSL1Q5SYE7 1610 aa8.91□□□□□ -0.98
CTDNEP1-204ENST00000570484 SSH2Q76I76 1423 aa8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 PARD3Q8TEW0 1356 aa8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 MYBBP1AQ9BQG0 1328 aaKnown RBP8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 PER1O15534 1290 aaPredicted RBP8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 ABTB2Q8N961 1025 aa8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 PRKRIP1Q9H875 184 aaPredicted RBP8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 RGPD8O14715 1765 aaPredicted RBP8.9□□□□□ -0.98
CTDNEP1-204ENST00000570484 OVOS2A0A0J9YW53 1432 aa8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 OVOS2Q6IE36 1432 aa8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 PIK3C2AO00443 1686 aa8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 MAP3K13O43283 966 aa8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 HAP1P54257 671 aaPredicted RBP8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 NLRP6P59044 892 aa8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 BBXQ8WY36 941 aaPredicted RBP8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 DDX17Q92841 729 aaKnown RBP8.89□□□□□ -0.99
CTDNEP1-204ENST00000570484 TRPM3Q9HCF6 1732 aaPredicted RBP8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 ANKRD26Q9UPS8 1709 aa8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 SOS2Q07890 1332 aaPredicted RBP8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 FYB1O15117 783 aa8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 TNNT2P45379 298 aaPredicted RBP8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 EVX2Q03828 476 aa8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 NUTM2GQ5VZR2 741 aa8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 NLRP13Q86W25 1043 aa8.88□□□□□ -0.99
CTDNEP1-204ENST00000570484 USP31Q70CQ4 1352 aa8.87□□□□□ -0.99
CTDNEP1-204ENST00000570484 MED1Q15648 1581 aaPredicted RBP8.87□□□□□ -0.99
CTDNEP1-204ENST00000570484 SPATA31A3Q5VYP0 1347 aa8.87□□□□□ -0.99
CTDNEP1-204ENST00000570484 SOX12O15370 315 aa8.87□□□□□ -0.99
CTDNEP1-204ENST00000570484 PHLPP1O60346 1717 aa8.87□□□□□ -0.99
CTDNEP1-204ENST00000570484 CLCN6P51797 869 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 IFNL1Q8IU54 200 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 KCNH5Q8NCM2 988 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 LRRC59Q96AG4 307 aaKnown RBP8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 CFAP53Q96M91 514 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 PHF12Q96QT6 1004 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 PCDHB13Q9Y5F0 798 aa8.86□□□□□ -0.99
CTDNEP1-204ENST00000570484 SLIT3O75094 1523 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 USP19O94966 1318 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 USP54Q70EL1 1684 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 ALS2Q96Q42 1657 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 COL16A1Q07092 1604 aaPredicted RBP8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 ZBTB7CA1YPR0 619 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 MRS2Q9HD23 443 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 PCDHB8Q9UN66 801 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 AATKQ6ZMQ8 1374 aa8.85□□□□□ -0.99
CTDNEP1-204ENST00000570484 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 CCER2I3L3R5 266 aa8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 PPM1GO15355 546 aaPredicted RBP8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 PPP2R1AP30153 589 aa8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 PDAP1Q13442 181 aaKnown RBP8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 ZFP91Q96JP5 570 aaPredicted RBP8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 RTL1A6NKG5 1358 aa8.84□□□□□ -0.99
CTDNEP1-204ENST00000570484 CDK12Q9NYV4 1490 aaPredicted RBP8.83□□□□□ -1
CTDNEP1-204ENST00000570484 SMG6Q86US8 1419 aaKnown RBP8.83□□□□□ -1
CTDNEP1-204ENST00000570484 NFAT5O94916 1531 aa8.83□□□□□ -1
CTDNEP1-204ENST00000570484 FLT4P35916 1363 aa8.83□□□□□ -1
CTDNEP1-204ENST00000570484 PNPLA6Q8IY17 1366 aa8.83□□□□□ -1
CTDNEP1-204ENST00000570484 JCADQ9P266 1359 aa8.83□□□□□ -1
CTDNEP1-204ENST00000570484 PHRF1Q9P1Y6 1649 aaKnown RBP8.83□□□□□ -1
CTDNEP1-204ENST00000570484 AMPHP49418 695 aa8.82□□□□□ -1
CTDNEP1-204ENST00000570484 PLCB2Q00722 1185 aa8.82□□□□□ -1
CTDNEP1-204ENST00000570484 RRS1Q15050 365 aaKnown RBP8.82□□□□□ -1
CTDNEP1-204ENST00000570484 KIF24Q5T7B8 1368 aa8.82□□□□□ -1
CTDNEP1-204ENST00000570484 COL22A1Q8NFW1 1626 aaPredicted RBP8.81□□□□□ -1
CTDNEP1-204ENST00000570484 GCP02774 474 aa8.81□□□□□ -1
CTDNEP1-204ENST00000570484 MTHFSP49914 203 aa8.81□□□□□ -1
CTDNEP1-204ENST00000570484 WDR43Q15061 677 aaKnown RBP eCLIP8.81□□□□□ -1
CTDNEP1-204ENST00000570484 EMILIN1Q9Y6C2 1016 aa8.81□□□□□ -1
CTDNEP1-204ENST00000570484 MAP3K19Q56UN5 1328 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 ABCC6O95255 1503 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 STK25O00506 426 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 PSEN1P49768 467 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 CABLES1Q8TDN4 633 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 PRDM11Q9NQV5 511 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 NUDCQ9Y266 331 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 SHPRHQ149N8 1683 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 ABCA3Q99758 1704 aa8.8□□□□□ -1
CTDNEP1-204ENST00000570484 BLMP54132 1417 aaPredicted RBP8.8□□□□□ -1
CTDNEP1-204ENST00000570484 CPDO75976 1380 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 KIAA0232Q92628 1395 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 HSPA1LP34931 641 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 ZC3H6P61129 1189 aaKnown RBP8.79□□□□□ -1
CTDNEP1-204ENST00000570484 NKX1-1Q15270 411 aaPredicted RBP8.79□□□□□ -1
CTDNEP1-204ENST00000570484 BCL11BQ9C0K0 894 aaPredicted RBP8.79□□□□□ -1
CTDNEP1-204ENST00000570484 POLKQ9UBT6 870 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 MARF1Q9Y4F3 1742 aaKnown RBP8.79□□□□□ -1
CTDNEP1-204ENST00000570484 CRYBG1Q9Y4K1 1723 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 SPATA31A6Q5VVP1 1343 aa8.79□□□□□ -1
CTDNEP1-204ENST00000570484 NUTM2BA6NNL0 878 aaPredicted RBP8.78□□□□□ -1
CTDNEP1-204ENST00000570484 NUTM2EB1AL46 878 aaPredicted RBP8.78□□□□□ -1
CTDNEP1-204ENST00000570484 DIAPH1O60610 1272 aaKnown RBP8.78□□□□□ -1
CTDNEP1-204ENST00000570484 NUTM2AQ8IVF1 878 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms