RNA–Protein interactions for RNA: ENST00000569240.5

CNOT1-216, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CNOT1, Length 7,660 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-216ENST00000569240 DDX12PQ92771 950 aa8.36□□□□□ -1.07
CNOT1-216ENST00000569240 RSRC1Q96IZ7 334 aaKnown RBP8.36□□□□□ -1.07
CNOT1-216ENST00000569240 NAA15Q9BXJ9 866 aaKnown RBP8.36□□□□□ -1.07
CNOT1-216ENST00000569240 UPF3BQ9BZI7 483 aaKnown RBP8.36□□□□□ -1.07
CNOT1-216ENST00000569240 CHMP3Q9Y3E7 222 aa8.36□□□□□ -1.07
CNOT1-216ENST00000569240 FGD6Q6ZV73 1430 aa8.36□□□□□ -1.07
CNOT1-216ENST00000569240 PCMTD1Q96MG8 357 aaPredicted RBP8.36□□□□□ -1.07
CNOT1-216ENST00000569240 CARMIL2Q6F5E8 1435 aa8.36□□□□□ -1.07
CNOT1-216ENST00000569240 MIPOL1Q8TD10 442 aa8.36□□□□□ -1.07
CNOT1-216ENST00000569240 EBAG9O00559 213 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 SRPK2P78362 688 aaKnown RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 FOXD4L5Q5VV16 416 aaPredicted RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 GPATCH11Q8N954 259 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 FOXD4L4Q8WXT5 416 aaPredicted RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 OPA1O60313 960 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 STIM1Q13586 685 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 SYCP1Q15431 976 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 CCDC38Q502W7 563 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 GBP6Q6ZN66 633 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 TACO1Q9BSH4 297 aaKnown RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 HFM1A2PYH4 1435 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 SERPINC1P01008 464 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 MVPQ14764 893 aaKnown RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 ARHGAP29Q52LW3 1261 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 ERO1AQ96HE7 468 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 CKAP4Q07065 602 aaKnown RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 GORABQ5T7V8 394 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 B4GALNT4Q76KP1 1039 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 MAGEC2Q9UBF1 373 aaPredicted RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 RPAP2Q8IXW5 612 aaPredicted RBP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 APBB1O00213 710 aa8.35□□□□□ -1.07
CNOT1-216ENST00000569240 BCCIPQ9P287 314 aaKnown RBP eCLIP8.35□□□□□ -1.07
CNOT1-216ENST00000569240 DNAJC21Q5F1R6 531 aaKnown RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 SMARCA2P51531 1590 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 ABCC11Q96J66 1382 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 PPFIA3O75145 1194 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 CEP135Q66GS9 1140 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 TNPO1Q92973 898 aaKnown RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 CYP46A1Q9Y6A2 500 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 ATP8B1O43520 1251 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 ZNF500O60304 480 aaPredicted RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 CASQ1P31415 396 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 NOL8Q76FK4 1167 aaKnown RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 PDILTQ8N807 584 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 CHMP7Q8WUX9 453 aaPredicted RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 TBC1D2Q9BYX2 928 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 LNPKQ9C0E8 428 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 NBPF11Q86T75 865 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 PRDM10Q9NQV6 1147 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 EPB41L2O43491 1005 aaKnown RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 IFIT2P09913 472 aaKnown RBP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 CEP112Q8N8E3 955 aa8.34□□□□□ -1.07
CNOT1-216ENST00000569240 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.34□□□□□ -1.07
CNOT1-216ENST00000569240 ANKRD18BA2A2Z9 1011 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 DMTNQ08495 405 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 ATP6V1AP38606 617 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 GCOM1H8Y6P7 765 aaPredicted RBP8.33□□□□□ -1.08
CNOT1-216ENST00000569240 CCDC175P0C221 793 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 MYZAPP0CAP1 466 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 UBE2HP62256 183 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 SMC5Q8IY18 1101 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 NSRP1Q9H0G5 558 aaKnown RBP8.33□□□□□ -1.08
CNOT1-216ENST00000569240 EVC2Q86UK5 1308 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 SYCE3A1L190 88 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 SNW1Q13573 536 aaKnown RBP8.33□□□□□ -1.08
CNOT1-216ENST00000569240 STK38Q15208 465 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 GPRASP1Q5JY77 1395 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 MAP3K1Q13233 1512 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 ARHGAP25P42331 645 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 FYCO1Q9BQS8 1478 aa8.33□□□□□ -1.08
CNOT1-216ENST00000569240 MPHOSPH10O00566 681 aaKnown RBP8.32□□□□□ -1.08
CNOT1-216ENST00000569240 LMAN1P49257 510 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 CHD1LQ86WJ1 897 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 FAM114A1Q8IWE2 563 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 SPC24Q8NBT2 197 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 FIBPO43427 364 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 BAG4O95429 457 aaKnown RBP8.32□□□□□ -1.08
CNOT1-216ENST00000569240 BMP2KLQ5H9B9 411 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 SPATA32Q96LK8 384 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 PYM1Q9BRP8 204 aaKnown RBP8.32□□□□□ -1.08
CNOT1-216ENST00000569240 LRPPRCP42704 1394 aaKnown RBP8.32□□□□□ -1.08
CNOT1-216ENST00000569240 CLIP2Q9UDT6 1046 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 CDKL5O76039 1030 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 EIF5P55010 431 aaKnown RBP8.32□□□□□ -1.08
CNOT1-216ENST00000569240 SH2D4BQ5SQS7 431 aa8.32□□□□□ -1.08
CNOT1-216ENST00000569240 KIF3CO14782 793 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 PAFAH1B1P43034 410 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 C6orf163Q5TEZ5 329 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 FAM200AQ8TCP9 573 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 LRRC9Q6ZRR7 1453 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 STMN4Q9H169 189 aaPredicted RBP8.31□□□□□ -1.08
CNOT1-216ENST00000569240 PIP4K2BP78356 416 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 STX1AQ16623 288 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 CENPHQ9H3R5 247 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.31□□□□□ -1.08
CNOT1-216ENST00000569240 ZNF445P59923 1031 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 ANAPC15P60006 121 aa8.31□□□□□ -1.08
CNOT1-216ENST00000569240 SUDS3Q9H7L9 328 aaPredicted RBP8.31□□□□□ -1.08
CNOT1-216ENST00000569240 USH1CQ9Y6N9 552 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms