RNA–Protein interactions for RNA: ENST00000564587.5

COMMD4-210, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-210ENST00000564587 FOXO3O43524 673 aa20.34■□□□□ 0.85
COMMD4-210ENST00000564587 KRT28Q7Z3Y7 464 aa20.34■□□□□ 0.85
COMMD4-210ENST00000564587 ZNF335Q9H4Z2 1342 aaPredicted RBP20.33■□□□□ 0.85
COMMD4-210ENST00000564587 PRKAR2BP31323 418 aa20.33■□□□□ 0.85
COMMD4-210ENST00000564587 EIF4A2Q14240 407 aaKnown RBP20.33■□□□□ 0.85
COMMD4-210ENST00000564587 PEAK1Q9H792 1746 aa20.33■□□□□ 0.84
COMMD4-210ENST00000564587 XIRP1Q702N8 1843 aaKnown RBP20.32■□□□□ 0.84
COMMD4-210ENST00000564587 IL16Q14005 1332 aa20.32■□□□□ 0.84
COMMD4-210ENST00000564587 NPHP3Q7Z494 1330 aa20.32■□□□□ 0.84
COMMD4-210ENST00000564587 NEUROD2Q15784 382 aa20.32■□□□□ 0.84
COMMD4-210ENST00000564587 TRPM3Q9HCF6 1732 aaPredicted RBP20.32■□□□□ 0.84
COMMD4-210ENST00000564587 MYH16Q9H6N6 1097 aa20.31■□□□□ 0.84
COMMD4-210ENST00000564587 RRP7AQ9Y3A4 280 aaKnown RBP20.31■□□□□ 0.84
COMMD4-210ENST00000564587 ARHGEF10O15013 1369 aa20.31■□□□□ 0.84
COMMD4-210ENST00000564587 CALD1Q05682 793 aaKnown RBP20.3■□□□□ 0.84
COMMD4-210ENST00000564587 LMOD3Q0VAK6 560 aa20.3■□□□□ 0.84
COMMD4-210ENST00000564587 HSP90AB2PQ58FF8 381 aa20.3■□□□□ 0.84
COMMD4-210ENST00000564587 SOX12O15370 315 aa20.29■□□□□ 0.84
COMMD4-210ENST00000564587 HSPA1LP34931 641 aa20.29■□□□□ 0.84
COMMD4-210ENST00000564587 RIPK4P57078 832 aa20.29■□□□□ 0.84
COMMD4-210ENST00000564587 PIP4K2BP78356 416 aa20.29■□□□□ 0.84
COMMD4-210ENST00000564587 NFE2L2Q16236 605 aa20.29■□□□□ 0.84
COMMD4-210ENST00000564587 SLIT3O75094 1523 aa20.28■□□□□ 0.84
COMMD4-210ENST00000564587 RGPD1P0DJD0 1748 aa20.28■□□□□ 0.84
COMMD4-210ENST00000564587 HMOX1P09601 288 aa20.28■□□□□ 0.84
COMMD4-210ENST00000564587 RRP1P56182 461 aaKnown RBP20.28■□□□□ 0.84
COMMD4-210ENST00000564587 NUTM2GQ5VZR2 741 aa20.28■□□□□ 0.84
COMMD4-210ENST00000564587 USP19O94966 1318 aa20.27■□□□□ 0.84
COMMD4-210ENST00000564587 HOXC9P31274 260 aa20.27■□□□□ 0.84
COMMD4-210ENST00000564587 PHRF1Q9P1Y6 1649 aaKnown RBP20.27■□□□□ 0.83
COMMD4-210ENST00000564587 NFAT5O94916 1531 aa20.27■□□□□ 0.83
COMMD4-210ENST00000564587 PELP1Q8IZL8 1130 aaKnown RBP20.26■□□□□ 0.83
COMMD4-210ENST00000564587 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.26■□□□□ 0.83
COMMD4-210ENST00000564587 IP6K1Q92551 441 aa20.26■□□□□ 0.83
COMMD4-210ENST00000564587 CT47B1P0C2W7 299 aaPredicted RBP20.25■□□□□ 0.83
COMMD4-210ENST00000564587 TRIM35Q9UPQ4 493 aa20.25■□□□□ 0.83
COMMD4-210ENST00000564587 ALS2Q96Q42 1657 aa20.25■□□□□ 0.83
COMMD4-210ENST00000564587 SULT6B1Q6IMI4 303 aa20.24■□□□□ 0.83
COMMD4-210ENST00000564587 SPINK5Q9NQ38 1064 aaPredicted RBP20.24■□□□□ 0.83
COMMD4-210ENST00000564587 PPP4R2Q9NY27 417 aa20.24■□□□□ 0.83
COMMD4-210ENST00000564587 LTN1O94822 1766 aa20.23■□□□□ 0.83
COMMD4-210ENST00000564587 KDRP35968 1356 aa20.23■□□□□ 0.83
COMMD4-210ENST00000564587 GCP02774 474 aa20.23■□□□□ 0.83
COMMD4-210ENST00000564587 IGSF1Q8N6C5 1336 aa20.23■□□□□ 0.83
COMMD4-210ENST00000564587 SLAIN2Q9P270 581 aa20.22■□□□□ 0.83
COMMD4-210ENST00000564587 XPCQ01831 940 aaPredicted RBP20.21■□□□□ 0.83
COMMD4-210ENST00000564587 LMOD2Q6P5Q4 547 aa20.21■□□□□ 0.83
COMMD4-210ENST00000564587 PHACTR3Q96KR7 559 aa20.21■□□□□ 0.83
COMMD4-210ENST00000564587 MED1Q15648 1581 aaPredicted RBP20.21■□□□□ 0.83
COMMD4-210ENST00000564587 TNS3Q68CZ2 1445 aa20.2■□□□□ 0.82
COMMD4-210ENST00000564587 IRX6P78412 446 aaPredicted RBP20.2■□□□□ 0.82
COMMD4-210ENST00000564587 ARHGEF25Q86VW2 580 aa20.2■□□□□ 0.82
COMMD4-210ENST00000564587 PXDNQ92626 1479 aa20.19■□□□□ 0.82
COMMD4-210ENST00000564587 BRINP3Q76B58 766 aa20.19■□□□□ 0.82
COMMD4-210ENST00000564587 EYA1Q99502 592 aa20.19■□□□□ 0.82
COMMD4-210ENST00000564587 SPATA31A3Q5VYP0 1347 aa20.18■□□□□ 0.82
COMMD4-210ENST00000564587 AEBP1Q8IUX7 1158 aa20.17■□□□□ 0.82
COMMD4-210ENST00000564587 GNAI1P63096 354 aa20.16■□□□□ 0.82
COMMD4-210ENST00000564587 GAS2L2Q8NHY3 880 aa20.16■□□□□ 0.82
COMMD4-210ENST00000564587 IFT57Q9NWB7 429 aa20.15■□□□□ 0.82
COMMD4-210ENST00000564587 ABCC6O95255 1503 aa20.15■□□□□ 0.82
COMMD4-210ENST00000564587 DLG5Q8TDM6 1919 aa20.15■□□□□ 0.82
COMMD4-210ENST00000564587 SOS2Q07890 1332 aaPredicted RBP20.14■□□□□ 0.81
COMMD4-210ENST00000564587 FANCIQ9NVI1 1328 aa20.14■□□□□ 0.81
COMMD4-210ENST00000564587 HTATSF1O43719 755 aaKnown RBP20.14■□□□□ 0.81
COMMD4-210ENST00000564587 TOM1O60784 492 aa20.14■□□□□ 0.81
COMMD4-210ENST00000564587 ZNF428Q96B54 188 aa20.13■□□□□ 0.81
COMMD4-210ENST00000564587 LTV1Q96GA3 475 aaPredicted RBP20.1■□□□□ 0.81
COMMD4-210ENST00000564587 CFAP44Q96MT7 982 aa20.1■□□□□ 0.81
COMMD4-210ENST00000564587 CPDO75976 1380 aa20.09■□□□□ 0.81
COMMD4-210ENST00000564587 ZBTB7CA1YPR0 619 aa20.09■□□□□ 0.81
COMMD4-210ENST00000564587 ZNF853P0CG23 659 aa20.09■□□□□ 0.81
COMMD4-210ENST00000564587 RARSP54136 660 aaKnown RBP20.09■□□□□ 0.81
COMMD4-210ENST00000564587 RTF1Q92541 710 aaKnown RBP20.09■□□□□ 0.81
COMMD4-210ENST00000564587 DDX17Q92841 729 aaKnown RBP20.09■□□□□ 0.81
COMMD4-210ENST00000564587 HAP1P54257 671 aaPredicted RBP20.08■□□□□ 0.81
COMMD4-210ENST00000564587 NHSL1Q5SYE7 1610 aa20.08■□□□□ 0.8
COMMD4-210ENST00000564587 NCAPD2Q15021 1401 aa20.08■□□□□ 0.8
COMMD4-210ENST00000564587 EXOSC9Q06265 439 aaKnown RBP20.07■□□□□ 0.8
COMMD4-210ENST00000564587 PDE3AQ14432 1141 aa20.07■□□□□ 0.8
COMMD4-210ENST00000564587 MTHFSDQ2M296 383 aaKnown RBP20.07■□□□□ 0.8
COMMD4-210ENST00000564587 ANKRD24Q8TF21 1146 aa20.07■□□□□ 0.8
COMMD4-210ENST00000564587 PLEKHG2Q9H7P9 1386 aa20.07■□□□□ 0.8
COMMD4-210ENST00000564587 MS4A1P11836 297 aa20.06■□□□□ 0.8
COMMD4-210ENST00000564587 TSR2Q969E8 191 aaKnown RBP20.06■□□□□ 0.8
COMMD4-210ENST00000564587 CRYBG1Q9Y4K1 1723 aa20.06■□□□□ 0.8
COMMD4-210ENST00000564587 PLIN1O60240 522 aa20.05■□□□□ 0.8
COMMD4-210ENST00000564587 ALDH1L2Q3SY69 923 aa20.05■□□□□ 0.8
COMMD4-210ENST00000564587 NBPF6Q5VWK0 638 aa20.05■□□□□ 0.8
COMMD4-210ENST00000564587 NBPF4Q96M43 638 aa20.05■□□□□ 0.8
COMMD4-210ENST00000564587 CAMTA1Q9Y6Y1 1673 aa20.04■□□□□ 0.8
COMMD4-210ENST00000564587 BCAR3O75815 825 aa20.04■□□□□ 0.8
COMMD4-210ENST00000564587 CANXP27824 592 aaKnown RBP20.04■□□□□ 0.8
COMMD4-210ENST00000564587 ZC3H6P61129 1189 aaKnown RBP20.04■□□□□ 0.8
COMMD4-210ENST00000564587 AMOTQ4VCS5 1084 aa20.04■□□□□ 0.8
COMMD4-210ENST00000564587 GNAT3A8MTJ3 354 aa20.03■□□□□ 0.8
COMMD4-210ENST00000564587 PLEKHO1Q53GL0 409 aaPredicted RBP20.03■□□□□ 0.8
COMMD4-210ENST00000564587 CCDC136Q96JN2 1154 aa20.03■□□□□ 0.8
COMMD4-210ENST00000564587 LAS1LQ9Y4W2 734 aaKnown RBP20.03■□□□□ 0.8
COMMD4-210ENST00000564587 FAM208AQ9UK61 1670 aaKnown RBP20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms