RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ANKRD33BA6NCL7 494 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 GPR37L1O60883 481 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 FMNL1O95466 1100 aaPredicted RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 RECKO95980 971 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 MARSP56192 900 aaKnown RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SF3A1Q15459 793 aaKnown RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 TICAM2Q86XR7 235 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SPSB2Q99619 263 aa7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SALL2Q9Y467 1007 aaPredicted RBP7.36□□□□□ -1.23
VPS35P1-201ENST00000563400 SOWAHDA6NJG2 315 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 USP17L8P0C7I0 530 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 QPCTQ16769 361 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 TMEM164Q5U3C3 297 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 STK32AQ8WU08 396 aa7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 MAFBQ9Y5Q3 323 aaPredicted RBP7.35□□□□□ -1.23
VPS35P1-201ENST00000563400 TLL1O43897 1013 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 VAMP1P23763 118 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 IRX6P78412 446 aaPredicted RBP7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 DIXDC1Q155Q3 683 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 WASHC4Q2M389 1173 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 SLC6A16Q9GZN6 736 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 PRDM16Q9HAZ2 1276 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 ZMIZ1Q9ULJ6 1067 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 NDUFB9Q9Y6M9 179 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 ABCC8Q09428 1581 aa7.34□□□□□ -1.23
VPS35P1-201ENST00000563400 RTL5Q5HYW3 569 aaPredicted RBP7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 PRR7Q8TB68 274 aa7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 SLC27A5Q9Y2P5 690 aa7.33□□□□□ -1.24
VPS35P1-201ENST00000563400 SERPINB4P48594 390 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 ZNF326Q5BKZ1 582 aaKnown RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 TBC1D9Q6ZT07 1266 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 MICAL1Q8TDZ2 1067 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 SPIRE2Q8WWL2 714 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 SLAIN2Q9P270 581 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 LOC102724159A0A0B4J2E5 919 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 RAB11FIP3O75154 756 aa7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 ARID4AP29374 1257 aaPredicted RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 PWP2Q15269 919 aaKnown RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 V9GY48 417 aaPredicted RBP7.32□□□□□ -1.24
VPS35P1-201ENST00000563400 CFTRP13569 1480 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 HOXA2O43364 376 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 CLSTN1O94985 981 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 S1PR4O95977 384 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 TSNAXIP1Q2TAA8 658 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 ANKLE1Q8NAG6 615 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 PRKD2Q9BZL6 878 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 RIPOR2Q9Y4F9 1068 aa7.31□□□□□ -1.24
VPS35P1-201ENST00000563400 CCDC88BA6NC98 1476 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 RNF223E7ERA6 249 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 SSFA2P28290 1259 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 ERCC5P28715 1186 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 DNAJC2Q99543 621 aaKnown RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 HMX1Q9NP08 348 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 BCCIPQ9P287 314 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 BIN2Q9UBW5 565 aaPredicted RBP7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 PPME1Q9Y570 386 aa7.3□□□□□ -1.24
VPS35P1-201ENST00000563400 SPTLC1O15269 473 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 LILRB3O75022 631 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SCNN1AP37088 669 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 KANK4Q5T7N3 995 aaPredicted RBP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 C9orf131Q5VYM1 1079 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 BRICD5Q6PL45 260 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 THAP11Q96EK4 314 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 IRX2Q9BZI1 471 aaPredicted RBP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SLC52A1Q9NWF4 448 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 PCDHB15Q9Y5E8 787 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 SBNO2Q9Y2G9 1366 aa7.29□□□□□ -1.24
VPS35P1-201ENST00000563400 RSBN1LQ6PCB5 846 aaPredicted RBP7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 FBXO33Q7Z6M2 555 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 GPATCH3Q96I76 525 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 CDCA7Q9BWT1 371 aaPredicted RBP7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 SUGT1Q9Y2Z0 365 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 CEP164Q9UPV0 1460 aa7.28□□□□□ -1.24
VPS35P1-201ENST00000563400 ELOAQ14241 798 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 TUSC1Q2TAM9 212 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 MSS51Q4VC12 460 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 USB1Q9BQ65 265 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 TRIM34Q9BYJ4 488 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 LNPKQ9C0E8 428 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 PLEKHD1A6NEE1 506 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 MOXD2PA6NHM9 499 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 FDX1P10109 184 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 SLC19A1P41440 591 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 LAPTM4AQ15012 233 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 CABLES1Q8TDN4 633 aa7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 NOVA2Q9UNW9 492 aaKnown RBP7.27□□□□□ -1.25
VPS35P1-201ENST00000563400 NDUFV2P19404 249 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 RNF19BQ6ZMZ0 732 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 FANCD2Q9BXW9 1451 aa7.26□□□□□ -1.25
VPS35P1-201ENST00000563400 CUX2O14529 1486 aa7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 PPEF1O14829 653 aaPredicted RBP7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 GJA5P36382 358 aa7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 NOP9Q86U38 636 aaKnown RBP7.25□□□□□ -1.25
VPS35P1-201ENST00000563400 NUTM2BA6NNL0 878 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 NUTM2EB1AL46 878 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 C6orf229H3BNL8 230 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 ZBTB24O43167 697 aaPredicted RBP7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 ATP9BO43861 1147 aa7.24□□□□□ -1.25
VPS35P1-201ENST00000563400 HDLBPQ00341 1268 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms