RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ABCC6O95255 1503 aa9.71□□□□□ -0.86
VPS39-204ENST00000561818 PHRF1Q9P1Y6 1649 aaKnown RBP9.71□□□□□ -0.86
VPS39-204ENST00000561818 IPO8O15397 1037 aaKnown RBP9.7□□□□□ -0.86
VPS39-204ENST00000561818 HTATSF1O43719 755 aaKnown RBP9.7□□□□□ -0.86
VPS39-204ENST00000561818 GNAI1P63096 354 aa9.7□□□□□ -0.86
VPS39-204ENST00000561818 SALL2Q9Y467 1007 aaPredicted RBP9.7□□□□□ -0.86
VPS39-204ENST00000561818 PPM1GO15355 546 aaPredicted RBP9.69□□□□□ -0.86
VPS39-204ENST00000561818 ATF3P18847 181 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 CANXP27824 592 aaKnown RBP9.69□□□□□ -0.86
VPS39-204ENST00000561818 MSH6P52701 1360 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 ALDH1L2Q3SY69 923 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 GAS2L2Q8NHY3 880 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 CDCA7LQ96GN5 454 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 IFT57Q9NWB7 429 aa9.69□□□□□ -0.86
VPS39-204ENST00000561818 KDRP35968 1356 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 PRKAR2BP31323 418 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 AMPHP49418 695 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 RIPK4P57078 832 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 NLRP6P59044 892 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 BABAM1Q9NWV8 329 aa9.68□□□□□ -0.86
VPS39-204ENST00000561818 PIK3C2AO00443 1686 aa9.67□□□□□ -0.86
VPS39-204ENST00000561818 LMTK3Q96Q04 1460 aa9.67□□□□□ -0.86
VPS39-204ENST00000561818 BRPF1P55201 1214 aaPredicted RBP9.67□□□□□ -0.86
VPS39-204ENST00000561818 PROSER2Q86WR7 435 aaPredicted RBP9.67□□□□□ -0.86
VPS39-204ENST00000561818 ABTB2Q8N961 1025 aa9.67□□□□□ -0.86
VPS39-204ENST00000561818 NPHP3Q7Z494 1330 aa9.66□□□□□ -0.86
VPS39-204ENST00000561818 RGPD1P0DJD0 1748 aa9.66□□□□□ -0.86
VPS39-204ENST00000561818 CENPQQ7L2Z9 268 aaPredicted RBP9.66□□□□□ -0.86
VPS39-204ENST00000561818 EMILIN1Q9Y6C2 1016 aa9.66□□□□□ -0.86
VPS39-204ENST00000561818 MAP3K19Q56UN5 1328 aa9.65□□□□□ -0.86
VPS39-204ENST00000561818 IGSF1Q8N6C5 1336 aa9.65□□□□□ -0.86
VPS39-204ENST00000561818 ESCO1Q5FWF5 840 aa9.65□□□□□ -0.86
VPS39-204ENST00000561818 PMFBP1Q8TBY8 1022 aa9.65□□□□□ -0.86
VPS39-204ENST00000561818 RTF1Q92541 710 aaKnown RBP9.65□□□□□ -0.86
VPS39-204ENST00000561818 SLIT3O75094 1523 aa9.65□□□□□ -0.86
VPS39-204ENST00000561818 C1orf167Q5SNV9 1468 aa9.65□□□□□ -0.87
VPS39-204ENST00000561818 FANCIQ9NVI1 1328 aa9.64□□□□□ -0.87
VPS39-204ENST00000561818 RARSP54136 660 aaKnown RBP9.64□□□□□ -0.87
VPS39-204ENST00000561818 EIF4A2Q14240 407 aaKnown RBP9.64□□□□□ -0.87
VPS39-204ENST00000561818 NEUROD2Q15784 382 aa9.64□□□□□ -0.87
VPS39-204ENST00000561818 ZKSCAN2Q63HK3 967 aa9.64□□□□□ -0.87
VPS39-204ENST00000561818 ARHGAP45Q92619 1136 aa9.64□□□□□ -0.87
VPS39-204ENST00000561818 CFAP44Q96MT7 982 aa9.64□□□□□ -0.87
VPS39-204ENST00000561818 KIAA0232Q92628 1395 aa9.63□□□□□ -0.87
VPS39-204ENST00000561818 USP19O94966 1318 aa9.63□□□□□ -0.87
VPS39-204ENST00000561818 NCKAP5LQ9HCH0 1330 aa9.63□□□□□ -0.87
VPS39-204ENST00000561818 TCERG1O14776 1098 aaKnown RBP9.63□□□□□ -0.87
VPS39-204ENST00000561818 RRS1Q15050 365 aaKnown RBP9.63□□□□□ -0.87
VPS39-204ENST00000561818 FTSJ3Q8IY81 847 aaKnown RBP9.63□□□□□ -0.87
VPS39-204ENST00000561818 TRIM35Q9UPQ4 493 aa9.63□□□□□ -0.87
VPS39-204ENST00000561818 OVOS2A0A0G2JMS6 1433 aa9.63□□□□□ -0.87
VPS39-204ENST00000561818 PAK3O75914 559 aaPredicted RBP9.62□□□□□ -0.87
VPS39-204ENST00000561818 IP6K1Q92551 441 aa9.62□□□□□ -0.87
VPS39-204ENST00000561818 DDX19BQ9UMR2 479 aa9.62□□□□□ -0.87
VPS39-204ENST00000561818 NCAPD2Q15021 1401 aa9.62□□□□□ -0.87
VPS39-204ENST00000561818 RGPD8O14715 1765 aaPredicted RBP9.62□□□□□ -0.87
VPS39-204ENST00000561818 TMEM94Q12767 1356 aa9.62□□□□□ -0.87
VPS39-204ENST00000561818 NFAT5O94916 1531 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 NUTM2FA1L443 756 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 EIF5BO60841 1220 aaKnown RBP9.61□□□□□ -0.87
VPS39-204ENST00000561818 HOXC9P31274 260 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 IRX6P78412 446 aaPredicted RBP9.61□□□□□ -0.87
VPS39-204ENST00000561818 AMOTQ4VCS5 1084 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 SULT6B1Q6IMI4 303 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 SMC4Q9NTJ3 1288 aa9.61□□□□□ -0.87
VPS39-204ENST00000561818 RRP7AQ9Y3A4 280 aaKnown RBP9.61□□□□□ -0.87
VPS39-204ENST00000561818 MED1Q15648 1581 aaPredicted RBP9.61□□□□□ -0.87
VPS39-204ENST00000561818 FAM208AQ9UK61 1670 aaKnown RBP9.61□□□□□ -0.87
VPS39-204ENST00000561818 B4GALNT3Q6L9W6 998 aa9.6□□□□□ -0.87
VPS39-204ENST00000561818 PEAK1Q9H792 1746 aa9.59□□□□□ -0.87
VPS39-204ENST00000561818 TNS3Q68CZ2 1445 aa9.59□□□□□ -0.87
VPS39-204ENST00000561818 HMOX1P09601 288 aa9.59□□□□□ -0.87
VPS39-204ENST00000561818 ZNF853P0CG23 659 aa9.59□□□□□ -0.87
VPS39-204ENST00000561818 DZIP1LQ8IYY4 767 aaKnown RBP9.59□□□□□ -0.87
VPS39-204ENST00000561818 CLUAP1Q96AJ1 413 aa9.59□□□□□ -0.87
VPS39-204ENST00000561818 API5Q9BZZ5 524 aaKnown RBP9.59□□□□□ -0.87
VPS39-204ENST00000561818 TRPM3Q9HCF6 1732 aaPredicted RBP9.59□□□□□ -0.87
VPS39-204ENST00000561818 HSP90AB2PQ58FF8 381 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 ATF7IPQ6VMQ6 1270 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 KRT28Q7Z3Y7 464 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 EXOC6Q8TAG9 804 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 CRBNQ96SW2 442 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 SPINK5Q9NQ38 1064 aaPredicted RBP9.58□□□□□ -0.88
VPS39-204ENST00000561818 MAP3K5Q99683 1374 aa9.58□□□□□ -0.88
VPS39-204ENST00000561818 PTPRCP08575 1304 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 MARF1Q9Y4F3 1742 aaKnown RBP9.57□□□□□ -0.88
VPS39-204ENST00000561818 GNAT3A8MTJ3 354 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 GCP02774 474 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 HOXB7P09629 217 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 MVPQ14764 893 aaKnown RBP9.57□□□□□ -0.88
VPS39-204ENST00000561818 RWDD1Q9H446 243 aaPredicted RBP9.57□□□□□ -0.88
VPS39-204ENST00000561818 ZRANB1Q9UGI0 708 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 CPDO75976 1380 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 ALS2Q96Q42 1657 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 LTN1O94822 1766 aa9.57□□□□□ -0.88
VPS39-204ENST00000561818 CAMTA1Q9Y6Y1 1673 aa9.56□□□□□ -0.88
VPS39-204ENST00000561818 EXOSC9Q06265 439 aaKnown RBP9.56□□□□□ -0.88
VPS39-204ENST00000561818 TWISTNBQ3B726 338 aaPredicted RBP9.56□□□□□ -0.88
VPS39-204ENST00000561818 PLEKHO1Q53GL0 409 aaPredicted RBP9.56□□□□□ -0.88
VPS39-204ENST00000561818 ARHGEF25Q86VW2 580 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms