RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 MST1RQ04912 1400 aa16.83■□□□□ 0.28
SNX1-211ENST00000560829 KIF1AQ12756 1690 aa16.82■□□□□ 0.28
SNX1-211ENST00000560829 PHACTR3Q96KR7 559 aa16.82■□□□□ 0.28
SNX1-211ENST00000560829 STRCQ7RTU9 1775 aa16.81■□□□□ 0.28
SNX1-211ENST00000560829 RGPD1P0DJD0 1748 aa16.81■□□□□ 0.28
SNX1-211ENST00000560829 RTL1A6NKG5 1358 aa16.81■□□□□ 0.28
SNX1-211ENST00000560829 ARHGEF10O15013 1369 aa16.81■□□□□ 0.28
SNX1-211ENST00000560829 ATF3P18847 181 aa16.81■□□□□ 0.28
SNX1-211ENST00000560829 SOX12O15370 315 aa16.8■□□□□ 0.28
SNX1-211ENST00000560829 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.8■□□□□ 0.28
SNX1-211ENST00000560829 FOXO3O43524 673 aa16.8■□□□□ 0.28
SNX1-211ENST00000560829 AMPHP49418 695 aa16.8■□□□□ 0.28
SNX1-211ENST00000560829 CADPS2Q86UW7 1296 aa16.8■□□□□ 0.28
SNX1-211ENST00000560829 CT47B1P0C2W7 299 aaPredicted RBP16.79■□□□□ 0.28
SNX1-211ENST00000560829 NUTM2GQ5VZR2 741 aa16.79■□□□□ 0.28
SNX1-211ENST00000560829 NFAT5O94916 1531 aa16.79■□□□□ 0.28
SNX1-211ENST00000560829 KDRP35968 1356 aa16.79■□□□□ 0.28
SNX1-211ENST00000560829 PLIN1O60240 522 aa16.78■□□□□ 0.28
SNX1-211ENST00000560829 HOXC9P31274 260 aa16.78■□□□□ 0.28
SNX1-211ENST00000560829 KCNH5Q8NCM2 988 aa16.78■□□□□ 0.28
SNX1-211ENST00000560829 SULT6B1Q6IMI4 303 aa16.78■□□□□ 0.28
SNX1-211ENST00000560829 MSH6P52701 1360 aa16.77■□□□□ 0.28
SNX1-211ENST00000560829 IGSF1Q8N6C5 1336 aa16.77■□□□□ 0.28
SNX1-211ENST00000560829 FANCIQ9NVI1 1328 aa16.77■□□□□ 0.28
SNX1-211ENST00000560829 LMOD3Q0VAK6 560 aa16.77■□□□□ 0.27
SNX1-211ENST00000560829 AEBP1Q8IUX7 1158 aa16.77■□□□□ 0.27
SNX1-211ENST00000560829 EXOC6Q8TAG9 804 aa16.77■□□□□ 0.27
SNX1-211ENST00000560829 SLIT3O75094 1523 aa16.77■□□□□ 0.27
SNX1-211ENST00000560829 CALD1Q05682 793 aaKnown RBP16.76■□□□□ 0.27
SNX1-211ENST00000560829 B4GALNT3Q6L9W6 998 aa16.76■□□□□ 0.27
SNX1-211ENST00000560829 KRT28Q7Z3Y7 464 aa16.76■□□□□ 0.27
SNX1-211ENST00000560829 TRPM3Q9HCF6 1732 aaPredicted RBP16.76■□□□□ 0.27
SNX1-211ENST00000560829 USP19O94966 1318 aa16.76■□□□□ 0.27
SNX1-211ENST00000560829 RARSP54136 660 aaKnown RBP16.75■□□□□ 0.27
SNX1-211ENST00000560829 BCAR3O75815 825 aa16.74■□□□□ 0.27
SNX1-211ENST00000560829 PHRF1Q9P1Y6 1649 aaKnown RBP16.74■□□□□ 0.27
SNX1-211ENST00000560829 IP6K1Q92551 441 aa16.73■□□□□ 0.27
SNX1-211ENST00000560829 EYA1Q99502 592 aa16.73■□□□□ 0.27
SNX1-211ENST00000560829 C20orf194Q5TEA3 1177 aa16.72■□□□□ 0.27
SNX1-211ENST00000560829 TSR2Q969E8 191 aaKnown RBP16.72■□□□□ 0.27
SNX1-211ENST00000560829 CCDC136Q96JN2 1154 aa16.72■□□□□ 0.27
SNX1-211ENST00000560829 CRBNQ96SW2 442 aa16.72■□□□□ 0.27
SNX1-211ENST00000560829 GCP02774 474 aa16.71■□□□□ 0.27
SNX1-211ENST00000560829 ZNF853P0CG23 659 aa16.71■□□□□ 0.27
SNX1-211ENST00000560829 XPCQ01831 940 aaPredicted RBP16.71■□□□□ 0.27
SNX1-211ENST00000560829 IFT57Q9NWB7 429 aa16.71■□□□□ 0.27
SNX1-211ENST00000560829 ZNF335Q9H4Z2 1342 aaPredicted RBP16.71■□□□□ 0.27
SNX1-211ENST00000560829 PDE3AQ14432 1141 aa16.71■□□□□ 0.27
SNX1-211ENST00000560829 NPHP3Q7Z494 1330 aa16.71■□□□□ 0.26
SNX1-211ENST00000560829 GNAI1P63096 354 aa16.7■□□□□ 0.26
SNX1-211ENST00000560829 EXOSC9Q06265 439 aaKnown RBP16.7■□□□□ 0.26
SNX1-211ENST00000560829 ARHGEF25Q86VW2 580 aa16.7■□□□□ 0.26
SNX1-211ENST00000560829 ALS2Q96Q42 1657 aa16.69■□□□□ 0.26
SNX1-211ENST00000560829 XIRP1Q702N8 1843 aaKnown RBP16.69■□□□□ 0.26
SNX1-211ENST00000560829 CFAP44Q96MT7 982 aa16.68■□□□□ 0.26
SNX1-211ENST00000560829 PXDNQ92626 1479 aa16.68■□□□□ 0.26
SNX1-211ENST00000560829 ZNF428Q96B54 188 aa16.67■□□□□ 0.26
SNX1-211ENST00000560829 THUMPD2Q9BTF0 503 aaKnown RBP16.67■□□□□ 0.26
SNX1-211ENST00000560829 LTN1O94822 1766 aa16.66■□□□□ 0.26
SNX1-211ENST00000560829 GAS2L2Q8NHY3 880 aa16.66■□□□□ 0.26
SNX1-211ENST00000560829 FAM83GA6ND36 823 aa16.65■□□□□ 0.26
SNX1-211ENST00000560829 MTHFSDQ2M296 383 aaKnown RBP16.65■□□□□ 0.26
SNX1-211ENST00000560829 TNS3Q68CZ2 1445 aa16.65■□□□□ 0.26
SNX1-211ENST00000560829 MED1Q15648 1581 aaPredicted RBP16.65■□□□□ 0.26
SNX1-211ENST00000560829 LMOD2Q6P5Q4 547 aa16.65■□□□□ 0.26
SNX1-211ENST00000560829 BRINP3Q76B58 766 aa16.65■□□□□ 0.26
SNX1-211ENST00000560829 NCAPD2Q15021 1401 aa16.64■□□□□ 0.25
SNX1-211ENST00000560829 HTATSF1O43719 755 aaKnown RBP16.64■□□□□ 0.25
SNX1-211ENST00000560829 ALDH1L2Q3SY69 923 aa16.64■□□□□ 0.25
SNX1-211ENST00000560829 MBIPQ9NS73 344 aa16.64■□□□□ 0.25
SNX1-211ENST00000560829 SPATA31A3Q5VYP0 1347 aa16.63■□□□□ 0.25
SNX1-211ENST00000560829 DLG5Q8TDM6 1919 aa16.63■□□□□ 0.25
SNX1-211ENST00000560829 CANXP27824 592 aaKnown RBP16.63■□□□□ 0.25
SNX1-211ENST00000560829 DCTN1Q14203 1278 aa16.63■□□□□ 0.25
SNX1-211ENST00000560829 DDX17Q92841 729 aaKnown RBP16.63■□□□□ 0.25
SNX1-211ENST00000560829 LTV1Q96GA3 475 aaPredicted RBP16.63■□□□□ 0.25
SNX1-211ENST00000560829 SLAIN2Q9P270 581 aa16.63■□□□□ 0.25
SNX1-211ENST00000560829 CRB1P82279 1406 aa16.62■□□□□ 0.25
SNX1-211ENST00000560829 BRPF1P55201 1214 aaPredicted RBP16.62■□□□□ 0.25
SNX1-211ENST00000560829 SSH1Q8WYL5 1049 aa16.62■□□□□ 0.25
SNX1-211ENST00000560829 LAS1LQ9Y4W2 734 aaKnown RBP16.62■□□□□ 0.25
SNX1-211ENST00000560829 CHL1O00533 1208 aa16.61■□□□□ 0.25
SNX1-211ENST00000560829 NBPF6Q5VWK0 638 aa16.61■□□□□ 0.25
SNX1-211ENST00000560829 FRAT1Q92837 279 aaPredicted RBP16.61■□□□□ 0.25
SNX1-211ENST00000560829 NBPF4Q96M43 638 aa16.61■□□□□ 0.25
SNX1-211ENST00000560829 BCL2L13Q9BXK5 485 aa16.61■□□□□ 0.25
SNX1-211ENST00000560829 SMC4Q9NTJ3 1288 aa16.61■□□□□ 0.25
SNX1-211ENST00000560829 VAMP4O75379 141 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 AAMPQ13685 434 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 ZKSCAN2Q63HK3 967 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 MCM10Q7L590 875 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 TSHZ2Q9NRE2 1034 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 ABCC6O95255 1503 aa16.6■□□□□ 0.25
SNX1-211ENST00000560829 SOS2Q07890 1332 aaPredicted RBP16.59■□□□□ 0.25
SNX1-211ENST00000560829 MS4A1P11836 297 aa16.59■□□□□ 0.25
SNX1-211ENST00000560829 RTF1Q92541 710 aaKnown RBP16.59■□□□□ 0.25
SNX1-211ENST00000560829 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
SNX1-211ENST00000560829 ANKRD24Q8TF21 1146 aa16.59■□□□□ 0.25
SNX1-211ENST00000560829 CAMTA1Q9Y6Y1 1673 aa16.58■□□□□ 0.24
SNX1-211ENST00000560829 ZBTB7CA1YPR0 619 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms