RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SRPK2P78362 688 aaKnown RBP20.39■□□□□ 0.86
SHMT2-232ENST00000557487 SKOR2Q2VWA4 1001 aaPredicted RBP20.39■□□□□ 0.86
SHMT2-232ENST00000557487 CFAP44Q96MT7 982 aa20.39■□□□□ 0.86
SHMT2-232ENST00000557487 PIK3R4Q99570 1358 aa20.39■□□□□ 0.85
SHMT2-232ENST00000557487 UBR1Q8IWV7 1749 aa20.39■□□□□ 0.85
SHMT2-232ENST00000557487 GBP4Q96PP9 640 aa20.39■□□□□ 0.85
SHMT2-232ENST00000557487 RRAGDQ9NQL2 400 aaPredicted RBP20.39■□□□□ 0.85
SHMT2-232ENST00000557487 HDGFL2Q7Z4V5 671 aaPredicted RBP20.38■□□□□ 0.85
SHMT2-232ENST00000557487 CD163L1Q9NR16 1453 aa20.38■□□□□ 0.85
SHMT2-232ENST00000557487 CLCN1P35523 988 aa20.37■□□□□ 0.85
SHMT2-232ENST00000557487 GGNBP2Q9H3C7 697 aa20.37■□□□□ 0.85
SHMT2-232ENST00000557487 NCKAP5LQ9HCH0 1330 aa20.36■□□□□ 0.85
SHMT2-232ENST00000557487 ANKLE2Q86XL3 938 aa20.36■□□□□ 0.85
SHMT2-232ENST00000557487 ARHGAP23Q9P227 1491 aa20.36■□□□□ 0.85
SHMT2-232ENST00000557487 PTCH1Q13635 1447 aa20.36■□□□□ 0.85
SHMT2-232ENST00000557487 SLIT1O75093 1534 aa20.36■□□□□ 0.85
SHMT2-232ENST00000557487 SPRYD3Q8NCJ5 442 aa20.35■□□□□ 0.85
SHMT2-232ENST00000557487 FAM135BQ49AJ0 1406 aa20.35■□□□□ 0.85
SHMT2-232ENST00000557487 KIF20BQ96Q89 1820 aa20.35■□□□□ 0.85
SHMT2-232ENST00000557487 STAG3Q9UJ98 1225 aa20.34■□□□□ 0.85
SHMT2-232ENST00000557487 TMEM2Q9UHN6 1383 aa20.33■□□□□ 0.84
SHMT2-232ENST00000557487 HSP90AB1P08238 724 aaKnown RBP20.33■□□□□ 0.84
SHMT2-232ENST00000557487 RAB3GAP1Q15042 981 aa20.33■□□□□ 0.84
SHMT2-232ENST00000557487 GRPEL1Q9HAV7 217 aa20.33■□□□□ 0.84
SHMT2-232ENST00000557487 YTHDC2Q9H6S0 1430 aaKnown RBP20.33■□□□□ 0.84
SHMT2-232ENST00000557487 LRRC7Q96NW7 1537 aa20.32■□□□□ 0.84
SHMT2-232ENST00000557487 UBE2Q2Q8WVN8 375 aa20.32■□□□□ 0.84
SHMT2-232ENST00000557487 KIF24Q5T7B8 1368 aa20.32■□□□□ 0.84
SHMT2-232ENST00000557487 ZBTB7BO15156 539 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-232ENST00000557487 LNPKQ9C0E8 428 aa20.31■□□□□ 0.84
SHMT2-232ENST00000557487 GZF1Q9H116 711 aaPredicted RBP20.31■□□□□ 0.84
SHMT2-232ENST00000557487 TMEM131LA2VDJ0 1609 aa20.3■□□□□ 0.84
SHMT2-232ENST00000557487 ATP7BP35670 1465 aa20.3■□□□□ 0.84
SHMT2-232ENST00000557487 TNPO1Q92973 898 aaKnown RBP20.29■□□□□ 0.84
SHMT2-232ENST00000557487 IFT57Q9NWB7 429 aa20.29■□□□□ 0.84
SHMT2-232ENST00000557487 GNAI1P63096 354 aa20.29■□□□□ 0.84
SHMT2-232ENST00000557487 NFE2L2Q16236 605 aa20.29■□□□□ 0.84
SHMT2-232ENST00000557487 CLEC17AQ6ZS10 378 aa20.29■□□□□ 0.84
SHMT2-232ENST00000557487 MRPL50Q8N5N7 158 aaKnown RBP20.29■□□□□ 0.84
SHMT2-232ENST00000557487 K7ELQ4 463 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-232ENST00000557487 LTKP29376 864 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 TXNDC2Q86VQ3 553 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 PRAM1Q96QH2 718 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 EID1Q9Y6B2 187 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 ABCC4O15439 1325 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 NPHP4O75161 1426 aaPredicted RBP20.27■□□□□ 0.84
SHMT2-232ENST00000557487 VAMP4O75379 141 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 LMOD3Q0VAK6 560 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 SAFB2Q14151 953 aaKnown RBP eCLIP20.27■□□□□ 0.84
SHMT2-232ENST00000557487 DLC1Q96QB1 1528 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 PANK2Q9BZ23 570 aa20.27■□□□□ 0.84
SHMT2-232ENST00000557487 ANKRD45Q5TZF3 282 aa20.26■□□□□ 0.83
SHMT2-232ENST00000557487 KIF2CQ99661 725 aa20.26■□□□□ 0.83
SHMT2-232ENST00000557487 STK26Q9P289 416 aa20.26■□□□□ 0.83
SHMT2-232ENST00000557487 MINK1Q8N4C8 1332 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-232ENST00000557487 GOLGA6L22H0YM25 854 aa20.25■□□□□ 0.83
SHMT2-232ENST00000557487 PRKAR2BP31323 418 aa20.25■□□□□ 0.83
SHMT2-232ENST00000557487 NUTM2DQ5VT03 806 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-232ENST00000557487 API5Q9BZZ5 524 aaKnown RBP20.25■□□□□ 0.83
SHMT2-232ENST00000557487 IBTKQ9P2D0 1353 aaPredicted RBP20.25■□□□□ 0.83
SHMT2-232ENST00000557487 CDC45O75419 566 aa20.25■□□□□ 0.83
SHMT2-232ENST00000557487 HSP90AA1P07900 732 aaKnown RBP20.24■□□□□ 0.83
SHMT2-232ENST00000557487 HDGFP51858 240 aaKnown RBP20.24■□□□□ 0.83
SHMT2-232ENST00000557487 ZNF853P0CG23 659 aa20.23■□□□□ 0.83
SHMT2-232ENST00000557487 TBC1D9Q6ZT07 1266 aa20.23■□□□□ 0.83
SHMT2-232ENST00000557487 CDK19Q9BWU1 502 aa20.23■□□□□ 0.83
SHMT2-232ENST00000557487 ALKQ9UM73 1620 aa20.23■□□□□ 0.83
SHMT2-232ENST00000557487 POLKQ9UBT6 870 aa20.22■□□□□ 0.83
SHMT2-232ENST00000557487 CDK12Q9NYV4 1490 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-232ENST00000557487 HAP1P54257 671 aaPredicted RBP20.21■□□□□ 0.83
SHMT2-232ENST00000557487 RIMS2Q9UQ26 1411 aa20.21■□□□□ 0.83
SHMT2-232ENST00000557487 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.21■□□□□ 0.83
SHMT2-232ENST00000557487 AATKQ6ZMQ8 1374 aa20.21■□□□□ 0.83
SHMT2-232ENST00000557487 ESPNB1AK53 854 aa20.2■□□□□ 0.82
SHMT2-232ENST00000557487 RABEP1Q15276 862 aa20.2■□□□□ 0.82
SHMT2-232ENST00000557487 TRIM44Q96DX7 344 aaPredicted RBP20.2■□□□□ 0.82
SHMT2-232ENST00000557487 CABP1Q9NZU7 370 aa20.2■□□□□ 0.82
SHMT2-232ENST00000557487 MYO5BQ9ULV0 1848 aa20.2■□□□□ 0.82
SHMT2-232ENST00000557487 ARXQ96QS3 562 aa20.19■□□□□ 0.82
SHMT2-232ENST00000557487 EDC4Q6P2E9 1401 aaKnown RBP20.18■□□□□ 0.82
SHMT2-232ENST00000557487 KLHL40Q2TBA0 621 aa20.17■□□□□ 0.82
SHMT2-232ENST00000557487 SIRT2Q8IXJ6 389 aa20.17■□□□□ 0.82
SHMT2-232ENST00000557487 CPSF1Q10570 1443 aaKnown RBP20.17■□□□□ 0.82
SHMT2-232ENST00000557487 LTBP4Q8N2S1 1624 aa20.16■□□□□ 0.82
SHMT2-232ENST00000557487 PLEKHG1Q9ULL1 1385 aa20.16■□□□□ 0.82
SHMT2-232ENST00000557487 NUCB2P80303 420 aa20.16■□□□□ 0.82
SHMT2-232ENST00000557487 CCDC173Q0VFZ6 552 aa20.16■□□□□ 0.82
SHMT2-232ENST00000557487 TWISTNBQ3B726 338 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-232ENST00000557487 NAP1L5Q96NT1 182 aaPredicted RBP20.16■□□□□ 0.82
SHMT2-232ENST00000557487 IL13P35225 146 aa20.15■□□□□ 0.82
SHMT2-232ENST00000557487 DCTPP1Q9H773 170 aa20.15■□□□□ 0.82
SHMT2-232ENST00000557487 MBIPQ9NS73 344 aa20.15■□□□□ 0.82
SHMT2-232ENST00000557487 ZNF335Q9H4Z2 1342 aaPredicted RBP20.15■□□□□ 0.82
SHMT2-232ENST00000557487 ANP32BQ92688 251 aaKnown RBP20.14■□□□□ 0.81
SHMT2-232ENST00000557487 PHACTR3Q96KR7 559 aa20.14■□□□□ 0.81
SHMT2-232ENST00000557487 PPP1R9BQ96SB3 815 aa20.14■□□□□ 0.81
SHMT2-232ENST00000557487 MAP2P11137 1827 aaKnown RBP20.13■□□□□ 0.81
SHMT2-232ENST00000557487 CWC22Q9HCG8 908 aaKnown RBP20.13■□□□□ 0.81
SHMT2-232ENST00000557487 INTS3Q68E01 1043 aaKnown RBP20.12■□□□□ 0.81
SHMT2-232ENST00000557487 PLEKHM2Q8IWE5 1019 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms