RNA–Protein interactions for RNA: ENST00000557060.1

SYNE2-225, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 3,203 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-225ENST00000557060 RIMS1Q86UR5 1692 aaKnown RBP7.62□□□□□ -1.19
SYNE2-225ENST00000557060 IGHDP01880 384 aa7.62□□□□□ -1.19
SYNE2-225ENST00000557060 PNNQ9H307 717 aaKnown RBP7.62□□□□□ -1.19
SYNE2-225ENST00000557060 SETD1AO15047 1707 aaKnown RBP7.62□□□□□ -1.19
SYNE2-225ENST00000557060 NFE2L2Q16236 605 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 PROSER2Q86WR7 435 aaPredicted RBP7.61□□□□□ -1.19
SYNE2-225ENST00000557060 NOB1Q9ULX3 412 aaKnown RBP7.61□□□□□ -1.19
SYNE2-225ENST00000557060 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.61□□□□□ -1.19
SYNE2-225ENST00000557060 PLEKHG3A1L390 1219 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 NGEFQ8N5V2 710 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 SIRT1Q96EB6 747 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 TECPR2O15040 1411 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 PHF8Q9UPP1 1060 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 USP6P35125 1406 aa7.61□□□□□ -1.19
SYNE2-225ENST00000557060 CCDC27Q2M243 656 aa7.6□□□□□ -1.19
SYNE2-225ENST00000557060 NECTIN2Q92692 538 aa7.6□□□□□ -1.19
SYNE2-225ENST00000557060 IQSEC2Q5JU85 1478 aa7.6□□□□□ -1.19
SYNE2-225ENST00000557060 ZKSCAN2Q63HK3 967 aa7.6□□□□□ -1.19
SYNE2-225ENST00000557060 MAP2P11137 1827 aaKnown RBP7.6□□□□□ -1.19
SYNE2-225ENST00000557060 COL3A1P02461 1466 aaPredicted RBP7.6□□□□□ -1.19
SYNE2-225ENST00000557060 PNPLA6Q8IY17 1366 aa7.6□□□□□ -1.19
SYNE2-225ENST00000557060 TRIM27P14373 513 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 PDE4AP27815 886 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 MBIPQ9NS73 344 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 DZIP1LQ8IYY4 767 aaKnown RBP7.59□□□□□ -1.19
SYNE2-225ENST00000557060 PCDHB15Q9Y5E8 787 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 USP32Q8NFA0 1604 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 LRRC7Q96NW7 1537 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 C8orf58Q8NAV2 365 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 C1orf115Q9H7X2 142 aa7.59□□□□□ -1.19
SYNE2-225ENST00000557060 ANP32AP39687 249 aaKnown RBP7.58□□□□□ -1.2
SYNE2-225ENST00000557060 CENPQQ7L2Z9 268 aaPredicted RBP7.58□□□□□ -1.2
SYNE2-225ENST00000557060 CDC42BPGQ6DT37 1551 aa7.58□□□□□ -1.2
SYNE2-225ENST00000557060 CEP170BQ9Y4F5 1589 aaPredicted RBP7.58□□□□□ -1.2
SYNE2-225ENST00000557060 PDE3AQ14432 1141 aa7.58□□□□□ -1.2
SYNE2-225ENST00000557060 EYA1Q99502 592 aa7.58□□□□□ -1.2
SYNE2-225ENST00000557060 SETD1BQ9UPS6 1966 aaKnown RBP7.58□□□□□ -1.2
SYNE2-225ENST00000557060 ZC3H6P61129 1189 aaKnown RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 TWISTNBQ3B726 338 aaPredicted RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 TMEM57Q8N5G2 664 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 RTF1Q92541 710 aaKnown RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 ARHGAP23Q9P227 1491 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 LRRC59Q96AG4 307 aaKnown RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 KIF20BQ96Q89 1820 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 MED14O60244 1454 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 SLIT1O75093 1534 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 MTHFSDQ2M296 383 aaKnown RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 ATF7IPQ6VMQ6 1270 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 CABLES1Q8TDN4 633 aa7.57□□□□□ -1.2
SYNE2-225ENST00000557060 RGPD8O14715 1765 aaPredicted RBP7.57□□□□□ -1.2
SYNE2-225ENST00000557060 DIP2AQ14689 1571 aa7.56□□□□□ -1.2
SYNE2-225ENST00000557060 KDM2BQ8NHM5 1336 aa7.56□□□□□ -1.2
SYNE2-225ENST00000557060 GNAI1P63096 354 aa7.56□□□□□ -1.2
SYNE2-225ENST00000557060 MVPQ14764 893 aaKnown RBP7.56□□□□□ -1.2
SYNE2-225ENST00000557060 ZNF428Q96B54 188 aa7.56□□□□□ -1.2
SYNE2-225ENST00000557060 AATKQ6ZMQ8 1374 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 APBB1O00213 710 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 VAMP4O75379 141 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 HOXC9P31274 260 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 CDK12Q9NYV4 1490 aaPredicted RBP7.55□□□□□ -1.2
SYNE2-225ENST00000557060 TTC21AQ8NDW8 1320 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 SLC4A3P48751 1232 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 NBR1Q14596 966 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 SLC4A10Q6U841 1118 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 TSPYL4Q9UJ04 414 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 PTCH1Q13635 1447 aa7.55□□□□□ -1.2
SYNE2-225ENST00000557060 ATF3P18847 181 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 CALD1Q05682 793 aaKnown RBP7.54□□□□□ -1.2
SYNE2-225ENST00000557060 LMOD3Q0VAK6 560 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 CFAP44Q96MT7 982 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 OVOS2A0A0J9YW53 1432 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 NPHP4O75161 1426 aaPredicted RBP7.54□□□□□ -1.2
SYNE2-225ENST00000557060 OVOS2Q6IE36 1432 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 BACH2Q9BYV9 841 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 ITSN1Q15811 1721 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 FLT4P35916 1363 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 DCAF8L1A6NGE4 600 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 IPO8O15397 1037 aaKnown RBP7.54□□□□□ -1.2
SYNE2-225ENST00000557060 IFT57Q9NWB7 429 aa7.54□□□□□ -1.2
SYNE2-225ENST00000557060 MYCNP04198 464 aaPredicted RBP7.53□□□□□ -1.2
SYNE2-225ENST00000557060 CHRNA2Q15822 529 aa7.53□□□□□ -1.2
SYNE2-225ENST00000557060 NBPF6Q5VWK0 638 aa7.53□□□□□ -1.2
SYNE2-225ENST00000557060 KRT28Q7Z3Y7 464 aa7.53□□□□□ -1.2
SYNE2-225ENST00000557060 NBPF4Q96M43 638 aa7.53□□□□□ -1.2
SYNE2-225ENST00000557060 IL16Q14005 1332 aa7.52□□□□□ -1.2
SYNE2-225ENST00000557060 KIF16BQ96L93 1317 aa7.52□□□□□ -1.2
SYNE2-225ENST00000557060 ANKRD26Q9UPS8 1709 aa7.52□□□□□ -1.2
SYNE2-225ENST00000557060 F6X3S4 739 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 GCP02774 474 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 RWDD1Q9H446 243 aaPredicted RBP7.52□□□□□ -1.21
SYNE2-225ENST00000557060 PDZRN3Q9UPQ7 1066 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 KNDC1Q76NI1 1749 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 LNPKQ9C0E8 428 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 ZBTB47Q9UFB7 747 aaPredicted RBP7.52□□□□□ -1.21
SYNE2-225ENST00000557060 DDX19BQ9UMR2 479 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 SBNO1A3KN83 1393 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 CSB-PGBD3P0DP91 1061 aa7.52□□□□□ -1.21
SYNE2-225ENST00000557060 EIF2S2P20042 333 aaKnown RBP7.52□□□□□ -1.21
SYNE2-225ENST00000557060 ADGRB2O60241 1585 aa7.51□□□□□ -1.21
SYNE2-225ENST00000557060 MPRIPQ6WCQ1 1025 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms