RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 COG3Q96JB2 828 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 LMOD3Q0VAK6 560 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 C8orf58Q8NAV2 365 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 SNX21Q969T3 373 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 GRPEL1Q9HAV7 217 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 CDC45O75419 566 aa11.8□□□□□ -0.52
SYNE2-213ENST00000554805 IFT57Q9NWB7 429 aa11.8□□□□□ -0.52
SYNE2-213ENST00000554805 RIMBP3CA6NJZ7 1639 aa11.8□□□□□ -0.52
SYNE2-213ENST00000554805 RIMBP3BA6NNM3 1639 aa11.8□□□□□ -0.52
SYNE2-213ENST00000554805 RIMBP3Q9UFD9 1639 aa11.8□□□□□ -0.52
SYNE2-213ENST00000554805 K7ELQ4 463 aaPredicted RBP11.8□□□□□ -0.52
SYNE2-213ENST00000554805 FRMPD1Q5SYB0 1578 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 TXNDC2Q86VQ3 553 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 FSD2A1L4K1 749 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 HECW2Q9P2P5 1572 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 NEXMIFQ5QGS0 1516 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 ARHGAP45Q92619 1136 aa11.79□□□□□ -0.52
SYNE2-213ENST00000554805 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
SYNE2-213ENST00000554805 PPIP5K1Q6PFW1 1433 aa11.78□□□□□ -0.52
SYNE2-213ENST00000554805 CD2BP2O95400 341 aaKnown RBP11.78□□□□□ -0.52
SYNE2-213ENST00000554805 CAMSAP1Q5T5Y3 1602 aa11.78□□□□□ -0.52
SYNE2-213ENST00000554805 ADGRB2O60241 1585 aa11.78□□□□□ -0.52
SYNE2-213ENST00000554805 NCKAP5LQ9HCH0 1330 aa11.78□□□□□ -0.52
SYNE2-213ENST00000554805 SSFA2P28290 1259 aa11.78□□□□□ -0.52
SYNE2-213ENST00000554805 ZC3H13Q5T200 1668 aaKnown RBP11.78□□□□□ -0.52
SYNE2-213ENST00000554805 SIRT2Q8IXJ6 389 aa11.77□□□□□ -0.52
SYNE2-213ENST00000554805 ZNF692Q9BU19 519 aaPredicted RBP11.77□□□□□ -0.52
SYNE2-213ENST00000554805 COL3A1P02461 1466 aaPredicted RBP11.77□□□□□ -0.52
SYNE2-213ENST00000554805 ZFYVE9O95405 1425 aa11.77□□□□□ -0.52
SYNE2-213ENST00000554805 IL13P35225 146 aa11.77□□□□□ -0.53
SYNE2-213ENST00000554805 SKOR2Q2VWA4 1001 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-213ENST00000554805 C16orf71Q8IYS4 520 aaPredicted RBP11.77□□□□□ -0.53
SYNE2-213ENST00000554805 ANP32BQ92688 251 aaKnown RBP11.77□□□□□ -0.53
SYNE2-213ENST00000554805 CFAP44Q96MT7 982 aa11.77□□□□□ -0.53
SYNE2-213ENST00000554805 DDX49Q9Y6V7 483 aaKnown RBP11.77□□□□□ -0.53
SYNE2-213ENST00000554805 PNPLA6Q8IY17 1366 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 KRT24Q2M2I5 525 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 CASC1Q6TDU7 716 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 GAS2L2Q8NHY3 880 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 SULT6B1Q6IMI4 303 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 SLC4A10Q6U841 1118 aa11.76□□□□□ -0.53
SYNE2-213ENST00000554805 NUDT16Q96DE0 195 aaKnown RBP11.76□□□□□ -0.53
SYNE2-213ENST00000554805 ARHGEF28Q8N1W1 1705 aaKnown RBP11.76□□□□□ -0.53
SYNE2-213ENST00000554805 SMARCA5O60264 1052 aaPredicted RBP11.76□□□□□ -0.53
SYNE2-213ENST00000554805 WASLO00401 505 aaPredicted RBP11.75□□□□□ -0.53
SYNE2-213ENST00000554805 PTMSP20962 102 aa11.75□□□□□ -0.53
SYNE2-213ENST00000554805 PTPRMP28827 1452 aa11.75□□□□□ -0.53
SYNE2-213ENST00000554805 BRPF1P55201 1214 aaPredicted RBP11.74□□□□□ -0.53
SYNE2-213ENST00000554805 FAM135BQ49AJ0 1406 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 MCM10Q7L590 875 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 AEBP1Q8IUX7 1158 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 PLEKHM2Q8IWE5 1019 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 KIF2CQ99661 725 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 CD163L1Q9NR16 1453 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 MCTP1Q6DN14 999 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 ABCC4O15439 1325 aa11.74□□□□□ -0.53
SYNE2-213ENST00000554805 OTUD7AQ8TE49 926 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 LRRC7Q96NW7 1537 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 GSPT1P15170 499 aaKnown RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 RABEP1Q15276 862 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 INTS3Q68E01 1043 aaKnown RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 GAS2L3Q86XJ1 694 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 ARHGAP31Q2M1Z3 1444 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 HAP1P54257 671 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 FOXD4L5Q5VV16 416 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 FOXD4L4Q8WXT5 416 aaPredicted RBP11.73□□□□□ -0.53
SYNE2-213ENST00000554805 MIS18AQ9NYP9 233 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 CCDC61Q9Y6R9 512 aa11.73□□□□□ -0.53
SYNE2-213ENST00000554805 ZNF853P0CG23 659 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 PIK3C2BO00750 1634 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 ESPNB1AK53 854 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 TTC22Q5TAA0 569 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 DCTPP1Q9H773 170 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 MED14O60244 1454 aa11.72□□□□□ -0.53
SYNE2-213ENST00000554805 RBM33Q96EV2 1170 aaKnown RBP11.72□□□□□ -0.53
SYNE2-213ENST00000554805 ISY1Q9ULR0 285 aaKnown RBP11.72□□□□□ -0.53
SYNE2-213ENST00000554805 CFAP74Q9C0B2 1584 aa11.71□□□□□ -0.53
SYNE2-213ENST00000554805 SIGLEC1Q9BZZ2 1709 aa11.71□□□□□ -0.53
SYNE2-213ENST00000554805 SLC26A8Q96RN1 970 aa11.71□□□□□ -0.53
SYNE2-213ENST00000554805 NEO1Q92859 1461 aa11.71□□□□□ -0.53
SYNE2-213ENST00000554805 BAG4O95429 457 aaKnown RBP11.71□□□□□ -0.54
SYNE2-213ENST00000554805 SLC4A2P04920 1241 aa11.71□□□□□ -0.54
SYNE2-213ENST00000554805 CLCN1P35523 988 aa11.71□□□□□ -0.54
SYNE2-213ENST00000554805 DDIT3P35638 169 aa11.71□□□□□ -0.54
SYNE2-213ENST00000554805 ST18O60284 1047 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 RTF1Q92541 710 aaKnown RBP11.7□□□□□ -0.54
SYNE2-213ENST00000554805 ANKRD44Q8N8A2 993 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 MEIS3Q99687 375 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 HMMRO75330 724 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 SDSP20132 328 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 NASPP49321 788 aaPredicted RBP11.7□□□□□ -0.54
SYNE2-213ENST00000554805 NOL8Q76FK4 1167 aaKnown RBP11.7□□□□□ -0.54
SYNE2-213ENST00000554805 RPAP2Q8IXW5 612 aaPredicted RBP11.7□□□□□ -0.54
SYNE2-213ENST00000554805 PTCH1Q13635 1447 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 ARHGEF40Q8TER5 1519 aa11.7□□□□□ -0.54
SYNE2-213ENST00000554805 NUCB2P80303 420 aa11.69□□□□□ -0.54
SYNE2-213ENST00000554805 CAVIN1Q6NZI2 390 aaKnown RBP11.69□□□□□ -0.54
SYNE2-213ENST00000554805 RIMS2Q9UQ26 1411 aa11.69□□□□□ -0.54
SYNE2-213ENST00000554805 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms