RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 USP32Q8NFA0 1604 aa11.64□□□□□ -0.55
PSEN1-209ENST00000553855 HDGFL2Q7Z4V5 671 aaPredicted RBP11.63□□□□□ -0.55
PSEN1-209ENST00000553855 RGPD8O14715 1765 aaPredicted RBP11.63□□□□□ -0.55
PSEN1-209ENST00000553855 POLR3AO14802 1390 aaPredicted RBP11.63□□□□□ -0.55
PSEN1-209ENST00000553855 BRD4O60885 1362 aaPredicted RBP11.63□□□□□ -0.55
PSEN1-209ENST00000553855 AFF2P51816 1311 aa11.62□□□□□ -0.55
PSEN1-209ENST00000553855 LRP6O75581 1613 aa11.62□□□□□ -0.55
PSEN1-209ENST00000553855 EIF4G2P78344 907 aaKnown RBP eCLIP11.62□□□□□ -0.55
PSEN1-209ENST00000553855 ABTB2Q8N961 1025 aa11.62□□□□□ -0.55
PSEN1-209ENST00000553855 PUS7Q96PZ0 661 aaKnown RBP11.62□□□□□ -0.55
PSEN1-209ENST00000553855 TERF2IPQ9NYB0 399 aa11.62□□□□□ -0.55
PSEN1-209ENST00000553855 NLRP13Q86W25 1043 aa11.61□□□□□ -0.55
PSEN1-209ENST00000553855 CABLES1Q8TDN4 633 aa11.6□□□□□ -0.55
PSEN1-209ENST00000553855 USP21Q9UK80 565 aa11.6□□□□□ -0.55
PSEN1-209ENST00000553855 COL22A1Q8NFW1 1626 aaPredicted RBP11.6□□□□□ -0.55
PSEN1-209ENST00000553855 NINLQ9Y2I6 1382 aa11.59□□□□□ -0.55
PSEN1-209ENST00000553855 RXRBP28702 533 aa11.59□□□□□ -0.55
PSEN1-209ENST00000553855 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
PSEN1-209ENST00000553855 KTN1Q86UP2 1357 aaKnown RBP11.58□□□□□ -0.56
PSEN1-209ENST00000553855 NUTM2GQ5VZR2 741 aa11.58□□□□□ -0.56
PSEN1-209ENST00000553855 TESK2Q96S53 571 aa11.58□□□□□ -0.56
PSEN1-209ENST00000553855 QTRT2Q9H974 415 aaKnown RBP11.58□□□□□ -0.56
PSEN1-209ENST00000553855 TRPC5Q9UL62 973 aaPredicted RBP11.58□□□□□ -0.56
PSEN1-209ENST00000553855 TOPAZ1Q8N9V7 1692 aa11.58□□□□□ -0.56
PSEN1-209ENST00000553855 NLRP6P59044 892 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 POTEAQ6S8J7 498 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 PHF12Q96QT6 1004 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 POLR3GLQ9BT43 218 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 RGS17Q9UGC6 210 aaPredicted RBP11.57□□□□□ -0.56
PSEN1-209ENST00000553855 USP6P35125 1406 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 TTC21AQ8NDW8 1320 aa11.57□□□□□ -0.56
PSEN1-209ENST00000553855 CLCN6P51797 869 aa11.56□□□□□ -0.56
PSEN1-209ENST00000553855 RBM6P78332 1123 aaKnown RBP11.56□□□□□ -0.56
PSEN1-209ENST00000553855 FNBP4Q8N3X1 1017 aaPredicted RBP11.56□□□□□ -0.56
PSEN1-209ENST00000553855 SLC12A5Q9H2X9 1139 aa11.56□□□□□ -0.56
PSEN1-209ENST00000553855 PRDM11Q9NQV5 511 aa11.56□□□□□ -0.56
PSEN1-209ENST00000553855 CCDC9Q9Y3X0 531 aaKnown RBP11.56□□□□□ -0.56
PSEN1-209ENST00000553855 TTC21BQ7Z4L5 1316 aa11.56□□□□□ -0.56
PSEN1-209ENST00000553855 ZNF467Q7Z7K2 595 aaPredicted RBP11.55□□□□□ -0.56
PSEN1-209ENST00000553855 ZBTB7CA1YPR0 619 aa11.54□□□□□ -0.56
PSEN1-209ENST00000553855 HSPA5P11021 654 aaKnown RBP11.54□□□□□ -0.56
PSEN1-209ENST00000553855 UNC5CLQ8IV45 518 aa11.54□□□□□ -0.56
PSEN1-209ENST00000553855 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.54□□□□□ -0.56
PSEN1-209ENST00000553855 KCNH5Q8NCM2 988 aa11.54□□□□□ -0.56
PSEN1-209ENST00000553855 TRPM3Q9HCF6 1732 aaPredicted RBP11.54□□□□□ -0.56
PSEN1-209ENST00000553855 GABBR2O75899 941 aa11.53□□□□□ -0.56
PSEN1-209ENST00000553855 ZC3H6P61129 1189 aaKnown RBP11.53□□□□□ -0.56
PSEN1-209ENST00000553855 ALS2Q96Q42 1657 aa11.52□□□□□ -0.56
PSEN1-209ENST00000553855 CPSF1Q10570 1443 aaKnown RBP11.52□□□□□ -0.56
PSEN1-209ENST00000553855 FAM83GA6ND36 823 aa11.52□□□□□ -0.57
PSEN1-209ENST00000553855 GCP02774 474 aa11.52□□□□□ -0.57
PSEN1-209ENST00000553855 EVA1CP58658 441 aa11.52□□□□□ -0.57
PSEN1-209ENST00000553855 BTG4Q9NY30 223 aa11.52□□□□□ -0.57
PSEN1-209ENST00000553855 EDC4Q6P2E9 1401 aaKnown RBP11.52□□□□□ -0.57
PSEN1-209ENST00000553855 KIAA0232Q92628 1395 aa11.51□□□□□ -0.57
PSEN1-209ENST00000553855 A0A0G2JS52 829 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 SOX12O15370 315 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 MYT1Q01538 1121 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 GJD4Q96KN9 370 aaPredicted RBP11.5□□□□□ -0.57
PSEN1-209ENST00000553855 USP19O94966 1318 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 A0A1W2PP64 1363 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 ANKRD36BQ8N2N9 1353 aa11.5□□□□□ -0.57
PSEN1-209ENST00000553855 PDAP1Q13442 181 aaKnown RBP11.49□□□□□ -0.57
PSEN1-209ENST00000553855 CHRNA2Q15822 529 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 VPS72Q15906 364 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 COG3Q96JB2 828 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 STRN4Q9NRL3 753 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 ATRNO75882 1429 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 SSH2Q76I76 1423 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 SLIT2O94813 1529 aa11.49□□□□□ -0.57
PSEN1-209ENST00000553855 MARF1Q9Y4F3 1742 aaKnown RBP11.49□□□□□ -0.57
PSEN1-209ENST00000553855 NME9Q86XW9 330 aa11.48□□□□□ -0.57
PSEN1-209ENST00000553855 BCL9LQ86UU0 1499 aa11.48□□□□□ -0.57
PSEN1-209ENST00000553855 CDK12Q9NYV4 1490 aaPredicted RBP11.48□□□□□ -0.57
PSEN1-209ENST00000553855 CPDO75976 1380 aa11.47□□□□□ -0.57
PSEN1-209ENST00000553855 KIF12Q96FN5 646 aa11.47□□□□□ -0.57
PSEN1-209ENST00000553855 AKAP12Q02952 1782 aa11.46□□□□□ -0.57
PSEN1-209ENST00000553855 COL14A1Q05707 1796 aaKnown RBP11.46□□□□□ -0.57
PSEN1-209ENST00000553855 ABCA3Q99758 1704 aa11.46□□□□□ -0.57
PSEN1-209ENST00000553855 USP31Q70CQ4 1352 aa11.46□□□□□ -0.57
PSEN1-209ENST00000553855 CSB-PGBD3P0DP91 1061 aa11.46□□□□□ -0.57
PSEN1-209ENST00000553855 CD163L1Q9NR16 1453 aa11.45□□□□□ -0.58
PSEN1-209ENST00000553855 MON2Q7Z3U7 1717 aa11.45□□□□□ -0.58
PSEN1-209ENST00000553855 PHRF1Q9P1Y6 1649 aaKnown RBP11.45□□□□□ -0.58
PSEN1-209ENST00000553855 AATKQ6ZMQ8 1374 aa11.44□□□□□ -0.58
PSEN1-209ENST00000553855 NWD2Q9ULI1 1742 aa11.44□□□□□ -0.58
PSEN1-209ENST00000553855 CGNL1Q0VF96 1302 aa11.44□□□□□ -0.58
PSEN1-209ENST00000553855 MAP3K13O43283 966 aa11.44□□□□□ -0.58
PSEN1-209ENST00000553855 NRKQ7Z2Y5 1582 aa11.44□□□□□ -0.58
PSEN1-209ENST00000553855 PIK3C2AO00443 1686 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 PLCH1Q4KWH8 1693 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 GALR2O43603 387 aaPredicted RBP11.43□□□□□ -0.58
PSEN1-209ENST00000553855 ARHGEF25Q86VW2 580 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 WDR70Q9NW82 654 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 USP35Q9P2H5 1018 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 PCDHB8Q9UN66 801 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 PCDHB13Q9Y5F0 798 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 SLIT3O75094 1523 aa11.43□□□□□ -0.58
PSEN1-209ENST00000553855 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.43□□□□□ -0.58
PSEN1-209ENST00000553855 RGS12O14924 1447 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms