RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 DHX9Q08211 1270 aaKnown RBP7.16□□□□□ -1.26
VRK1-202ENST00000553683 NNTQ13423 1086 aa7.16□□□□□ -1.26
VRK1-202ENST00000553683 ARID5BQ14865 1188 aa7.16□□□□□ -1.26
VRK1-202ENST00000553683 COG6Q9Y2V7 657 aa7.16□□□□□ -1.26
VRK1-202ENST00000553683 IRF5Q13568 498 aa7.15□□□□□ -1.26
VRK1-202ENST00000553683 HPS1Q92902 700 aa7.15□□□□□ -1.26
VRK1-202ENST00000553683 KCTD15Q96SI1 283 aaPredicted RBP7.15□□□□□ -1.26
VRK1-202ENST00000553683 KLF16Q9BXK1 252 aaPredicted RBP7.15□□□□□ -1.26
VRK1-202ENST00000553683 GDPD2Q9HCC8 539 aa7.15□□□□□ -1.26
VRK1-202ENST00000553683 AAASQ9NRG9 546 aa7.15□□□□□ -1.26
VRK1-202ENST00000553683 EMILIN1Q9Y6C2 1016 aa7.15□□□□□ -1.26
VRK1-202ENST00000553683 UBTFP17480 764 aaKnown RBP7.14□□□□□ -1.27
VRK1-202ENST00000553683 EIF4G2P78344 907 aaKnown RBP eCLIP7.14□□□□□ -1.27
VRK1-202ENST00000553683 RNF20Q5VTR2 975 aa7.14□□□□□ -1.27
VRK1-202ENST00000553683 CCDC116Q8IYX3 515 aa7.14□□□□□ -1.27
VRK1-202ENST00000553683 LCE2BO14633 110 aa7.13□□□□□ -1.27
VRK1-202ENST00000553683 FSHRP23945 695 aa7.13□□□□□ -1.27
VRK1-202ENST00000553683 NR3C2P08235 984 aa7.12□□□□□ -1.27
VRK1-202ENST00000553683 PGPEP1Q9NXJ5 209 aa7.12□□□□□ -1.27
VRK1-202ENST00000553683 PCDHB9Q9Y5E1 797 aa7.12□□□□□ -1.27
VRK1-202ENST00000553683 A6NJR5 290 aa7.11□□□□□ -1.27
VRK1-202ENST00000553683 CAPN5O15484 640 aaPredicted RBP7.11□□□□□ -1.27
VRK1-202ENST00000553683 TIMP2P16035 220 aa7.11□□□□□ -1.27
VRK1-202ENST00000553683 ABL2P42684 1182 aa7.11□□□□□ -1.27
VRK1-202ENST00000553683 WDR4P57081 412 aaKnown RBP7.11□□□□□ -1.27
VRK1-202ENST00000553683 INTS6LQ5JSJ4 861 aaKnown RBP7.11□□□□□ -1.27
VRK1-202ENST00000553683 ZIC2O95409 532 aaPredicted RBP7.09□□□□□ -1.27
VRK1-202ENST00000553683 PPP1R26Q5T8A7 1209 aaPredicted RBP7.09□□□□□ -1.27
VRK1-202ENST00000553683 SENP2Q9HC62 589 aa7.09□□□□□ -1.27
VRK1-202ENST00000553683 CEP126Q9P2H0 1117 aa7.09□□□□□ -1.27
VRK1-202ENST00000553683 ST8SIA5O15466 376 aa7.08□□□□□ -1.28
VRK1-202ENST00000553683 Q6ZVU0 165 aa7.08□□□□□ -1.28
VRK1-202ENST00000553683 KIFC2Q96AC6 838 aa7.08□□□□□ -1.28
VRK1-202ENST00000553683 ITPKCQ96DU7 683 aa7.08□□□□□ -1.28
VRK1-202ENST00000553683 ATP13A2Q9NQ11 1180 aa7.08□□□□□ -1.28
VRK1-202ENST00000553683 GIGYF1O75420 1035 aaPredicted RBP7.07□□□□□ -1.28
VRK1-202ENST00000553683 FNBP4Q8N3X1 1017 aaPredicted RBP7.07□□□□□ -1.28
VRK1-202ENST00000553683 CHIC2Q9UKJ5 165 aa7.07□□□□□ -1.28
VRK1-202ENST00000553683 ERVH48-1M5A8F1 160 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 VAC14Q08AM6 782 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 SEMA3FQ13275 785 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 MEIOBQ8N635 442 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 POM121Q96HA1 1249 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 TSEN34Q9BSV6 310 aaKnown RBP7.06□□□□□ -1.28
VRK1-202ENST00000553683 GTF3C3Q9Y5Q9 886 aa7.06□□□□□ -1.28
VRK1-202ENST00000553683 UPP2O95045 317 aa7.05□□□□□ -1.28
VRK1-202ENST00000553683 SCARF1Q14162 830 aa7.05□□□□□ -1.28
VRK1-202ENST00000553683 MRPL14Q6P1L8 145 aaKnown RBP7.05□□□□□ -1.28
VRK1-202ENST00000553683 PROSER2Q86WR7 435 aaPredicted RBP7.05□□□□□ -1.28
VRK1-202ENST00000553683 PHTF2Q8N3S3 785 aa7.05□□□□□ -1.28
VRK1-202ENST00000553683 ALG2Q9H553 416 aa7.05□□□□□ -1.28
VRK1-202ENST00000553683 ZFAND3Q9H8U3 227 aa7.05□□□□□ -1.28
VRK1-202ENST00000553683 MAP7D1Q3KQU3 841 aa7.04□□□□□ -1.28
VRK1-202ENST00000553683 NFATC2IPQ8NCF5 419 aa7.04□□□□□ -1.28
VRK1-202ENST00000553683 TRIM47Q96LD4 638 aa7.04□□□□□ -1.28
VRK1-202ENST00000553683 LZTS3O60299 673 aaPredicted RBP7.03□□□□□ -1.28
VRK1-202ENST00000553683 LILRA1O75019 489 aa7.03□□□□□ -1.28
VRK1-202ENST00000553683 ERVK-9P63128 1117 aa7.03□□□□□ -1.28
VRK1-202ENST00000553683 SLFNL1Q499Z3 407 aa7.03□□□□□ -1.28
VRK1-202ENST00000553683 TRIM46Q7Z4K8 759 aa7.03□□□□□ -1.28
VRK1-202ENST00000553683 ZNF787Q6DD87 383 aa7.02□□□□□ -1.29
VRK1-202ENST00000553683 CC2D2BQ6DHV5 1058 aa7.02□□□□□ -1.29
VRK1-202ENST00000553683 ZNF784Q8NCA9 323 aaPredicted RBP7.02□□□□□ -1.29
VRK1-202ENST00000553683 SIRT1Q96EB6 747 aa7.02□□□□□ -1.29
VRK1-202ENST00000553683 DACH1Q9UI36 760 aa7.02□□□□□ -1.29
VRK1-202ENST00000553683 ADH1AP07327 375 aa7.01□□□□□ -1.29
VRK1-202ENST00000553683 ERICH6Q7L0X2 663 aa7.01□□□□□ -1.29
VRK1-202ENST00000553683 RNF135Q8IUD6 432 aa7.01□□□□□ -1.29
VRK1-202ENST00000553683 LINC00528Q8N1L1 170 aa7.01□□□□□ -1.29
VRK1-202ENST00000553683 CLUAP1Q96AJ1 413 aa7.01□□□□□ -1.29
VRK1-202ENST00000553683 GMPR2Q9P2T1 348 aaKnown RBP7.01□□□□□ -1.29
VRK1-202ENST00000553683 SPINT1O43278 529 aa7□□□□□ -1.29
VRK1-202ENST00000553683 USP4Q13107 963 aa7□□□□□ -1.29
VRK1-202ENST00000553683 TMPRSS4Q9NRS4 437 aa7□□□□□ -1.29
VRK1-202ENST00000553683 PCDHB11Q9Y5F2 797 aa7□□□□□ -1.29
VRK1-202ENST00000553683 C11orf95C9JLR9 678 aaPredicted RBP6.99□□□□□ -1.29
VRK1-202ENST00000553683 TRAK2O60296 914 aa6.99□□□□□ -1.29
VRK1-202ENST00000553683 BMP1P13497 986 aa6.99□□□□□ -1.29
VRK1-202ENST00000553683 CYP2U1Q7Z449 544 aa6.99□□□□□ -1.29
VRK1-202ENST00000553683 ZFP42Q96MM3 310 aa6.99□□□□□ -1.29
VRK1-202ENST00000553683 ESF1Q9H501 851 aaKnown RBP6.99□□□□□ -1.29
VRK1-202ENST00000553683 MYCP01106 439 aaPredicted RBP6.98□□□□□ -1.29
VRK1-202ENST00000553683 ADD1P35611 737 aaKnown RBP6.98□□□□□ -1.29
VRK1-202ENST00000553683 PTGIRP43119 386 aa6.98□□□□□ -1.29
VRK1-202ENST00000553683 RAB15P59190 212 aa6.98□□□□□ -1.29
VRK1-202ENST00000553683 CBLBQ13191 982 aa6.98□□□□□ -1.29
VRK1-202ENST00000553683 CCDC85AQ96PX6 553 aaPredicted RBP6.98□□□□□ -1.29
VRK1-202ENST00000553683 DOLKQ9UPQ8 538 aa6.98□□□□□ -1.29
VRK1-202ENST00000553683 ATP5J2-PTCD1G3V325 749 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 GNRH1P01148 92 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 BMP2P12643 396 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 HDGFL1Q5TGJ6 251 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 PLPP7Q8NBV4 271 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 PURBQ96QR8 312 aaKnown RBP6.97□□□□□ -1.29
VRK1-202ENST00000553683 ZMYND15Q9H091 742 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 CYLDQ9NQC7 956 aa6.97□□□□□ -1.29
VRK1-202ENST00000553683 SOS2Q07890 1332 aaPredicted RBP6.97□□□□□ -1.29
VRK1-202ENST00000553683 POM121CA8CG34 1229 aa6.96□□□□□ -1.3
VRK1-202ENST00000553683 GPC1P35052 558 aa6.96□□□□□ -1.3
VRK1-202ENST00000553683 KDF1Q8NAX2 398 aaPredicted RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms