RNA–Protein interactions for RNA: ENST00000552422.5

CNOT2-238, Transcript of CCR4-NOT transcription complex subunit 2, human

TSL 3

Gene CNOT2, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT2-238	ENST00000552422	PPP1R18	Q6NYC8	613 aa		10.2	□□□□□ -0.78
CNOT2-238	ENST00000552422	DHX29	Q7Z478	1369 aa	Known RBP	10.2	□□□□□ -0.78
CNOT2-238	ENST00000552422	CCDC102A	Q96A19	550 aa		10.2	□□□□□ -0.78
CNOT2-238	ENST00000552422	FAM135A	Q9P2D6	1515 aa		10.2	□□□□□ -0.78
CNOT2-238	ENST00000552422	MROH1	Q8NDA8	1641 aa		10.19	□□□□□ -0.78
CNOT2-238	ENST00000552422	CEP152	O94986	1710 aa		10.19	□□□□□ -0.78
CNOT2-238	ENST00000552422	NR1I2	O75469	434 aa		10.18	□□□□□ -0.78
CNOT2-238	ENST00000552422	GGCX	P38435	758 aa		10.18	□□□□□ -0.78
CNOT2-238	ENST00000552422	FAM50A	Q14320	339 aa	Known RBP	10.18	□□□□□ -0.78
CNOT2-238	ENST00000552422	GCC2	Q8IWJ2	1684 aa		10.18	□□□□□ -0.78
CNOT2-238	ENST00000552422	PRDM15	P57071	1507 aa	Predicted RBP	10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	NCOA1	Q15788	1441 aa		10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	ERBIN	Q96RT1	1412 aa		10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	KIF15	Q9NS87	1388 aa		10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	TLL1	O43897	1013 aa		10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	KRI1	Q8N9T8	703 aa	Known RBP	10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	PREX1	Q8TCU6	1659 aa		10.17	□□□□□ -0.78
CNOT2-238	ENST00000552422	PTPRK	Q15262	1439 aa		10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	ANKRD30A	Q9BXX3	1397 aa		10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	CFAP65	Q6ZU64	1925 aa	Known RBP	10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	MDM2	Q00987	491 aa	Predicted RBP	10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	MLEC	Q14165	292 aa		10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	PUS10	Q3MIT2	529 aa	Known RBP	10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	KDM5D	Q9BY66	1539 aa		10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	CNTLN	Q9NXG0	1405 aa		10.16	□□□□□ -0.78
CNOT2-238	ENST00000552422	CAMSAP1	Q5T5Y3	1602 aa		10.15	□□□□□ -0.78
CNOT2-238	ENST00000552422	GCGR	P47871	477 aa		10.15	□□□□□ -0.78
CNOT2-238	ENST00000552422	ROCK1	Q13464	1354 aa		10.14	□□□□□ -0.79
CNOT2-238	ENST00000552422	UNC13B	O14795	1591 aa		10.14	□□□□□ -0.79
CNOT2-238	ENST00000552422	FUT2	Q10981	343 aa		10.14	□□□□□ -0.79
CNOT2-238	ENST00000552422	ZC3H15	Q8WU90	426 aa	Known RBP	10.14	□□□□□ -0.79
CNOT2-238	ENST00000552422	SCUBE3	Q8IX30	993 aa		10.13	□□□□□ -0.79
CNOT2-238	ENST00000552422	IRX2	Q9BZI1	471 aa	Predicted RBP	10.13	□□□□□ -0.79
CNOT2-238	ENST00000552422	ABCC3	O15438	1527 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	KIF3B	O15066	747 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	ZMYND10	O75800	440 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	BARGIN	Q6ZT62	677 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	TMUB1	Q9BVT8	246 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	CHIC2	Q9UKJ5	165 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	VWDE	Q8N2E2	1590 aa		10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	ZNF142	P52746	1687 aa	Predicted RBP	10.12	□□□□□ -0.79
CNOT2-238	ENST00000552422	ATP6V1A	P38606	617 aa		10.11	□□□□□ -0.79
CNOT2-238	ENST00000552422	PRKD2	Q9BZL6	878 aa		10.11	□□□□□ -0.79
CNOT2-238	ENST00000552422	RRP7BP	Q9NSQ0	103 aa		10.11	□□□□□ -0.79
CNOT2-238	ENST00000552422	MYO3A	Q8NEV4	1616 aa		10.11	□□□□□ -0.79
CNOT2-238	ENST00000552422	ANKRD50	Q9ULJ7	1429 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	ADH1B	P00325	375 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	CD46	P15529	392 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	CLCN1	P35523	988 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	MORN1	Q5T089	497 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	GGT6	Q6P531	493 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	GPCPD1	Q9NPB8	672 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	IQGAP3	Q86VI3	1631 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	LMTK3	Q96Q04	1460 aa		10.1	□□□□□ -0.79
CNOT2-238	ENST00000552422	TET3	O43151	1660 aa		10.09	□□□□□ -0.79
CNOT2-238	ENST00000552422	NPAT	Q14207	1427 aa		10.09	□□□□□ -0.79
CNOT2-238	ENST00000552422	GRIPAP1	Q4V328	841 aa		10.09	□□□□□ -0.79
CNOT2-238	ENST00000552422	ESF1	Q9H501	851 aa	Known RBP	10.09	□□□□□ -0.79
CNOT2-238	ENST00000552422	PZP	P20742	1482 aa		10.09	□□□□□ -0.79
CNOT2-238	ENST00000552422	LMTK2	Q8IWU2	1503 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	RNF223	E7ERA6	249 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	SLC24A1	O60721	1099 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	S1PR4	O95977	384 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	SPSB2	Q99619	263 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	ZMYM3	Q14202	1370 aa		10.08	□□□□□ -0.8
CNOT2-238	ENST00000552422	EFCAB6	Q5THR3	1501 aa		10.07	□□□□□ -0.8
CNOT2-238	ENST00000552422	ITGAE	P38570	1179 aa		10.07	□□□□□ -0.8
CNOT2-238	ENST00000552422	SLC6A16	Q9GZN6	736 aa		10.07	□□□□□ -0.8
CNOT2-238	ENST00000552422	SLC27A5	Q9Y2P5	690 aa		10.07	□□□□□ -0.8
CNOT2-238	ENST00000552422	HFM1	A2PYH4	1435 aa		10.07	□□□□□ -0.8
CNOT2-238	ENST00000552422		E9PCH4	1651 aa		10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422	SPATA31D1	Q6ZQQ2	1576 aa		10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422	CEBPA	P49715	358 aa	Predicted RBP	10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422		V9GY48	417 aa	Predicted RBP	10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422	NAIP	Q13075	1403 aa		10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422	WASHC2C	Q9Y4E1	1318 aa		10.06	□□□□□ -0.8
CNOT2-238	ENST00000552422	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	PPEF1	O14829	653 aa	Predicted RBP	10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	KDM4A	O75164	1064 aa		10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	TTLL12	Q14166	644 aa	Predicted RBP	10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	ARHGAP31	Q2M1Z3	1444 aa		10.05	□□□□□ -0.8
CNOT2-238	ENST00000552422	KANK1	Q14678	1352 aa		10.04	□□□□□ -0.8
CNOT2-238	ENST00000552422	FMNL1	O95466	1100 aa	Predicted RBP	10.04	□□□□□ -0.8
CNOT2-238	ENST00000552422	UHRF1BP1	Q6BDS2	1440 aa		10.04	□□□□□ -0.8
CNOT2-238	ENST00000552422	STRC	Q7RTU9	1775 aa		10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	SPHKAP	Q2M3C7	1700 aa		10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	ANKLE1	Q8NAG6	615 aa		10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	ERVK-7	P63135	1459 aa		10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	RPRD2	Q5VT52	1461 aa	Known RBP	10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	MYO5B	Q9ULV0	1848 aa		10.03	□□□□□ -0.8
CNOT2-238	ENST00000552422	KDM5A	P29375	1690 aa	Known RBP	10.02	□□□□□ -0.8
CNOT2-238	ENST00000552422	POLR1A	O95602	1720 aa	Predicted RBP	10.02	□□□□□ -0.8
CNOT2-238	ENST00000552422	UBR1	Q8IWV7	1749 aa		10.02	□□□□□ -0.8
CNOT2-238	ENST00000552422	THAP11	Q96EK4	314 aa		10.02	□□□□□ -0.81
CNOT2-238	ENST00000552422	SYNM	O15061	1565 aa		10.01	□□□□□ -0.81
CNOT2-238	ENST00000552422	USP46	P62068	366 aa		10.01	□□□□□ -0.81
CNOT2-238	ENST00000552422	AMHR2	Q16671	573 aa		10.01	□□□□□ -0.81
CNOT2-238	ENST00000552422	REPIN1	Q9BWE0	567 aa	Known RBP	10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms