RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 VGFO15240 615 aaPredicted RBP15.24■□□□□ 0.03
PTCH1-212ENST00000546744 KLHL40Q2TBA0 621 aa15.24■□□□□ 0.03
PTCH1-212ENST00000546744 JMYQ8N9B5 988 aa15.24■□□□□ 0.03
PTCH1-212ENST00000546744 SRCIN1Q9C0H9 1055 aa15.24■□□□□ 0.03
PTCH1-212ENST00000546744 MBD5Q9P267 1494 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 KIF18AQ8NI77 898 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 NBPF8Q3BBV2 869 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 IQCEQ6IPM2 695 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 TNMDQ9H2S6 317 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 DACH1Q9UI36 760 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 PREX2Q70Z35 1606 aa15.23■□□□□ 0.03
PTCH1-212ENST00000546744 TRDNQ13061 729 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 CREBRFQ8IUR6 639 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 SAMD9LQ8IVG5 1584 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 SAFB2Q14151 953 aaKnown RBP eCLIP15.22■□□□□ 0.03
PTCH1-212ENST00000546744 TCP11L2Q8N4U5 519 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 TIGD1Q96MW7 591 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 ARHGEF5Q12774 1597 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 ADGBQ8N7X0 1667 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 RPRD2Q5VT52 1461 aaKnown RBP15.22■□□□□ 0.03
PTCH1-212ENST00000546744 TAF7LQ5H9L4 462 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 CTR9Q6PD62 1173 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 SMAP1Q8IYB5 467 aaPredicted RBP15.22■□□□□ 0.03
PTCH1-212ENST00000546744 DNAJC2Q99543 621 aaKnown RBP15.22■□□□□ 0.03
PTCH1-212ENST00000546744 CHMP3Q9Y3E7 222 aa15.22■□□□□ 0.03
PTCH1-212ENST00000546744 DUOX2Q9NRD8 1548 aa15.21■□□□□ 0.03
PTCH1-212ENST00000546744 CEP57L1Q8IYX8 460 aa15.21■□□□□ 0.03
PTCH1-212ENST00000546744 MCM3P25205 808 aa15.21■□□□□ 0.03
PTCH1-212ENST00000546744 STK26Q9P289 416 aa15.21■□□□□ 0.03
PTCH1-212ENST00000546744 DHX16O60231 1041 aaKnown RBP15.21■□□□□ 0.02
PTCH1-212ENST00000546744 TUBB4AP04350 444 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 NEXNQ0ZGT2 675 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 ATF7IPQ6VMQ6 1270 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 KDM6BO15054 1643 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 CCDC183Q5T5S1 534 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 CHD1LQ86WJ1 897 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 NUP62CLQ9H1M0 184 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 PAXBP1Q9Y5B6 917 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 PTPN14Q15678 1187 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 AXDND1Q5T1B0 1012 aaPredicted RBP15.2■□□□□ 0.02
PTCH1-212ENST00000546744 COG3Q96JB2 828 aa15.2■□□□□ 0.02
PTCH1-212ENST00000546744 DENND4BO75064 1496 aaPredicted RBP15.19■□□□□ 0.02
PTCH1-212ENST00000546744 FIBPO43427 364 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 KIF20AO95235 890 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 CFAP45Q9UL16 551 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 SMC2O95347 1197 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 PPP6R1Q9UPN7 881 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 SLFN5Q08AF3 891 aa15.19■□□□□ 0.02
PTCH1-212ENST00000546744 DDX58O95786 925 aaKnown RBP15.18■□□□□ 0.02
PTCH1-212ENST00000546744 BMS1Q14692 1282 aaKnown RBP15.18■□□□□ 0.02
PTCH1-212ENST00000546744 ZRSR2Q15696 482 aaKnown RBP15.18■□□□□ 0.02
PTCH1-212ENST00000546744 CAGE1Q8TC20 777 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 TBC1D2Q9BYX2 928 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 PZPP20742 1482 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 ERBINQ96RT1 1412 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 POTEB2H3BUK9 544 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 LUC7LQ9NQ29 371 aaKnown RBP15.18■□□□□ 0.02
PTCH1-212ENST00000546744 G3BP1Q13283 466 aaKnown RBP eCLIP15.18■□□□□ 0.02
PTCH1-212ENST00000546744 MAP3K11Q16584 847 aa15.18■□□□□ 0.02
PTCH1-212ENST00000546744 SMTNL1A8MU46 457 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 PCMTD1Q96MG8 357 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-212ENST00000546744 ZNF518AQ6AHZ1 1483 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 GOLGA6L10A6NI86 522 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 OFD1O75665 1012 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 ELL2O00472 640 aaPredicted RBP15.17■□□□□ 0.02
PTCH1-212ENST00000546744 MAP9Q49MG5 647 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.17■□□□□ 0.02
PTCH1-212ENST00000546744 INCENPQ9NQS7 918 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 ZSCAN12O43309 604 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 SPC24Q8NBT2 197 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 TRAK1Q9UPV9 953 aa15.17■□□□□ 0.02
PTCH1-212ENST00000546744 TBC1D32Q96NH3 1257 aa15.16■□□□□ 0.02
PTCH1-212ENST00000546744 TULP1O00294 542 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-212ENST00000546744 CBX1P83916 185 aa15.16■□□□□ 0.02
PTCH1-212ENST00000546744 CLASRPQ8N2M8 674 aaKnown RBP15.16■□□□□ 0.02
PTCH1-212ENST00000546744 RBM25P49756 843 aaKnown RBP15.16■□□□□ 0.02
PTCH1-212ENST00000546744 DDX11Q96FC9 970 aa15.16■□□□□ 0.02
PTCH1-212ENST00000546744 FEZ1Q99689 392 aa15.16■□□□□ 0.02
PTCH1-212ENST00000546744 C9orf78Q9NZ63 289 aaPredicted RBP15.16■□□□□ 0.02
PTCH1-212ENST00000546744 CYP46A1Q9Y6A2 500 aa15.16■□□□□ 0.02
PTCH1-212ENST00000546744 RTEL1-TNFRSF6BF6WH68 1400 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 ERC1Q8IUD2 1116 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 RPAP2Q8IXW5 612 aaPredicted RBP15.15■□□□□ 0.02
PTCH1-212ENST00000546744 KRT222Q8N1A0 295 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 LRPPRCP42704 1394 aaKnown RBP15.15■□□□□ 0.02
PTCH1-212ENST00000546744 GSDMDP57764 484 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 GIMAP7Q8NHV1 300 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 CTAGE5O15320 804 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 AMPHP49418 695 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 FAM135AQ9P2D6 1515 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 PDE4CQ08493 712 aa15.15■□□□□ 0.02
PTCH1-212ENST00000546744 GOLGA6L9A6NEM1 432 aa15.14■□□□□ 0.01
PTCH1-212ENST00000546744 XBP1P17861 261 aa15.14■□□□□ 0.01
PTCH1-212ENST00000546744 PDILTQ8N807 584 aa15.14■□□□□ 0.01
PTCH1-212ENST00000546744 TNPO1Q92973 898 aaKnown RBP15.14■□□□□ 0.01
PTCH1-212ENST00000546744 SCAND2PQ9GZW5 306 aaPredicted RBP15.14■□□□□ 0.01
PTCH1-212ENST00000546744 ZKSCAN5Q9Y2L8 839 aa15.14■□□□□ 0.01
PTCH1-212ENST00000546744 NKTRP30414 1462 aaKnown RBP15.14■□□□□ 0.01
PTCH1-212ENST00000546744 SYCE3A1L190 88 aa15.14■□□□□ 0.01
PTCH1-212ENST00000546744 ERLIN2O94905 339 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms