RNA–Protein interactions for RNA: ENST00000544910.5

VPS50-220, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2 BASIC

Gene VPS50, Length 5,736 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-220ENST00000544910 NLRP6P59044 892 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 NUCB2P80303 420 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 PSME1Q06323 249 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 MLH3Q9UHC1 1453 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 SLC4A2P04920 1241 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 RABEP1Q15276 862 aa7.08□□□□□ -1.28
VPS50-220ENST00000544910 THUMPD2Q9BTF0 503 aaKnown RBP7.08□□□□□ -1.28
VPS50-220ENST00000544910 GOLGA6L4A6NEF3 574 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 PHF14O94880 888 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 GNAI2P04899 355 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 GNAI3P08754 354 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 FOXD4L5Q5VV16 416 aaPredicted RBP7.07□□□□□ -1.28
VPS50-220ENST00000544910 NUTM2GQ5VZR2 741 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 FOXD4L4Q8WXT5 416 aaPredicted RBP7.07□□□□□ -1.28
VPS50-220ENST00000544910 TRAK2O60296 914 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 PLCB2Q00722 1185 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 ABCC3O15438 1527 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 UBTFL1P0CB47 393 aaPredicted RBP7.07□□□□□ -1.28
VPS50-220ENST00000544910 SETBP1Q9Y6X0 1596 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 KIAA1210Q9ULL0 1709 aa7.07□□□□□ -1.28
VPS50-220ENST00000544910 ADGRB3O60242 1522 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 K7ELQ4 463 aaPredicted RBP7.06□□□□□ -1.28
VPS50-220ENST00000544910 TNRQ92752 1358 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 A0A0G2JS52 829 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 NCBP3Q53F19 620 aaKnown RBP7.06□□□□□ -1.28
VPS50-220ENST00000544910 ABTB2Q8N961 1025 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 MBIPQ9NS73 344 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 NAP1L2Q9ULW6 460 aaPredicted RBP7.06□□□□□ -1.28
VPS50-220ENST00000544910 PCDHB15Q9Y5E8 787 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 THEMISQ8N1K5 641 aaPredicted RBP7.06□□□□□ -1.28
VPS50-220ENST00000544910 TBC1D32Q96NH3 1257 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 HSP90AB4PQ58FF6 505 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 MCTP1Q6DN14 999 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 DIAPH3Q9NSV4 1193 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 RPAP2Q8IXW5 612 aaPredicted RBP7.06□□□□□ -1.28
VPS50-220ENST00000544910 RUFY2Q8WXA3 655 aa7.06□□□□□ -1.28
VPS50-220ENST00000544910 PPRC1Q5VV67 1664 aaKnown RBP7.05□□□□□ -1.28
VPS50-220ENST00000544910 TRMT2AQ8IZ69 625 aaKnown RBP7.05□□□□□ -1.28
VPS50-220ENST00000544910 ANO2Q9NQ90 1003 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 C9orf78Q9NZ63 289 aaPredicted RBP7.05□□□□□ -1.28
VPS50-220ENST00000544910 GLI2P10070 1586 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 TTC21BQ7Z4L5 1316 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 MRE11P49959 708 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 NUCB1Q02818 461 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 BRPF3Q9ULD4 1205 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 TNNQ9UQP3 1299 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 ZNF521Q96K83 1311 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 LMTK2Q8IWU2 1503 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 RLBP1P12271 317 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 MCM10Q7L590 875 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 ARHGAP45Q92619 1136 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 DMRT2Q9Y5R5 561 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 CAMSAP1Q5T5Y3 1602 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 HSP90B1P14625 803 aaKnown RBP7.05□□□□□ -1.28
VPS50-220ENST00000544910 DCTN1Q14203 1278 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 MRPL50Q8N5N7 158 aaKnown RBP7.05□□□□□ -1.28
VPS50-220ENST00000544910 TBC1D2Q9BYX2 928 aa7.05□□□□□ -1.28
VPS50-220ENST00000544910 DDX58O95786 925 aaKnown RBP7.04□□□□□ -1.28
VPS50-220ENST00000544910 IFIT2P09913 472 aaKnown RBP7.04□□□□□ -1.28
VPS50-220ENST00000544910 LRRCC1Q9C099 1032 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 CIZ1Q9ULV3 898 aaPredicted RBP7.04□□□□□ -1.28
VPS50-220ENST00000544910 PTPRCP08575 1304 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 ERC2O15083 957 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 HTATSF1O43719 755 aaKnown RBP7.04□□□□□ -1.28
VPS50-220ENST00000544910 CHMP3Q9Y3E7 222 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 GNAT3A8MTJ3 354 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 EDC4Q6P2E9 1401 aaKnown RBP7.04□□□□□ -1.28
VPS50-220ENST00000544910 CNTROBQ8N137 903 aa7.04□□□□□ -1.28
VPS50-220ENST00000544910 CFAP65Q6ZU64 1925 aaKnown RBP7.03□□□□□ -1.28
VPS50-220ENST00000544910 PRKCSHP14314 528 aaPredicted RBP7.03□□□□□ -1.28
VPS50-220ENST00000544910 NEXNQ0ZGT2 675 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 PLEKHO1Q53GL0 409 aaPredicted RBP7.03□□□□□ -1.28
VPS50-220ENST00000544910 SLC26A8Q96RN1 970 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 POLKQ9UBT6 870 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 MCM4P33991 863 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 IL27Q8NEV9 243 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 ATP6V1DQ9Y5K8 247 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 TTC5Q8N0Z6 440 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 PKNOX2Q96KN3 472 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 CWC22Q9HCG8 908 aaKnown RBP7.03□□□□□ -1.28
VPS50-220ENST00000544910 BMP2KLQ5H9B9 411 aa7.03□□□□□ -1.28
VPS50-220ENST00000544910 MCM2P49736 904 aa7.02□□□□□ -1.28
VPS50-220ENST00000544910 ESCO1Q5FWF5 840 aa7.02□□□□□ -1.28
VPS50-220ENST00000544910 DEPDC5O75140 1603 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 ACEP12821 1306 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 FAM43AQ8N2R8 423 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 FAM83GA6ND36 823 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 FBLN1P23142 703 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 G3BP1Q13283 466 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS50-220ENST00000544910 DRC7Q8IY82 874 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 SRCIN1Q9C0H9 1055 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 YEATS2Q9ULM3 1422 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 MIS18AQ9NYP9 233 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 TRIM35Q9UPQ4 493 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 HDGFL1Q5TGJ6 251 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 ZMYM3Q14202 1370 aa7.02□□□□□ -1.29
VPS50-220ENST00000544910 MAP7D2Q96T17 732 aa7.01□□□□□ -1.29
VPS50-220ENST00000544910 ZKSCAN1P17029 563 aaPredicted RBP7.01□□□□□ -1.29
VPS50-220ENST00000544910 MTERF4Q7Z6M4 381 aaKnown RBP7.01□□□□□ -1.29
VPS50-220ENST00000544910 TTC21AQ8NDW8 1320 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms