RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 NRKQ7Z2Y5 1582 aa22.95■■□□□ 1.26
VIM-209ENST00000544301 TTC21BQ7Z4L5 1316 aa22.95■■□□□ 1.26
VIM-209ENST00000544301 TMEM57Q8N5G2 664 aa22.95■■□□□ 1.26
VIM-209ENST00000544301 PTPRUQ92729 1446 aa22.94■■□□□ 1.26
VIM-209ENST00000544301 PLEKHG3A1L390 1219 aa22.94■■□□□ 1.26
VIM-209ENST00000544301 IFT57Q9NWB7 429 aa22.94■■□□□ 1.26
VIM-209ENST00000544301 USP19O94966 1318 aa22.94■■□□□ 1.26
VIM-209ENST00000544301 ACEP12821 1306 aa22.94■■□□□ 1.26
VIM-209ENST00000544301 BRPF1P55201 1214 aaPredicted RBP22.94■■□□□ 1.26
VIM-209ENST00000544301 HDAC1Q13547 482 aaPredicted RBP22.94■■□□□ 1.26
VIM-209ENST00000544301 SLC4A3P48751 1232 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 GNAI1P63096 354 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 SLC26A8Q96RN1 970 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 SEC24BO95487 1268 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 ZNF853P0CG23 659 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 EID1Q9Y6B2 187 aa22.93■■□□□ 1.26
VIM-209ENST00000544301 DEKP35659 375 aaKnown RBP22.92■■□□□ 1.26
VIM-209ENST00000544301 DAXXQ9UER7 740 aaPredicted RBP22.92■■□□□ 1.26
VIM-209ENST00000544301 VAMP4O75379 141 aa22.91■■□□□ 1.26
VIM-209ENST00000544301 ZBTB40Q9NUA8 1239 aa22.91■■□□□ 1.26
VIM-209ENST00000544301 LMOD3Q0VAK6 560 aa22.91■■□□□ 1.26
VIM-209ENST00000544301 DLG5Q8TDM6 1919 aa22.91■■□□□ 1.26
VIM-209ENST00000544301 SLIT1O75093 1534 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 NUTM2FA1L443 756 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 OVOS2A0A0J9YW53 1432 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 USP6P35125 1406 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 OVOS2Q6IE36 1432 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 ARHGAP23Q9P227 1491 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 MBIPQ9NS73 344 aa22.9■■□□□ 1.26
VIM-209ENST00000544301 TSPYL6Q8N831 410 aa22.88■■□□□ 1.25
VIM-209ENST00000544301 EIF4A2Q14240 407 aaKnown RBP22.88■■□□□ 1.25
VIM-209ENST00000544301 MRPL50Q8N5N7 158 aaKnown RBP22.88■■□□□ 1.25
VIM-209ENST00000544301 AMOTL2Q9Y2J4 779 aa22.88■■□□□ 1.25
VIM-209ENST00000544301 CFAP44Q96MT7 982 aa22.87■■□□□ 1.25
VIM-209ENST00000544301 USP35Q9P2H5 1018 aa22.87■■□□□ 1.25
VIM-209ENST00000544301 TBX22Q9Y458 520 aa22.87■■□□□ 1.25
VIM-209ENST00000544301 NALCNQ8IZF0 1738 aa22.85■■□□□ 1.25
VIM-209ENST00000544301 FAM83GA6ND36 823 aa22.85■■□□□ 1.25
VIM-209ENST00000544301 SSH2Q76I76 1423 aa22.85■■□□□ 1.25
VIM-209ENST00000544301 SMC5Q8IY18 1101 aa22.85■■□□□ 1.25
VIM-209ENST00000544301 ARHGAP45Q92619 1136 aa22.85■■□□□ 1.25
VIM-209ENST00000544301 AEBP1Q8IUX7 1158 aa22.84■■□□□ 1.25
VIM-209ENST00000544301 USP31Q70CQ4 1352 aa22.84■■□□□ 1.25
VIM-209ENST00000544301 PTCH1Q13635 1447 aa22.84■■□□□ 1.25
VIM-209ENST00000544301 SULT6B1Q6IMI4 303 aa22.83■■□□□ 1.25
VIM-209ENST00000544301 PLPPR3Q6T4P5 718 aa22.83■■□□□ 1.25
VIM-209ENST00000544301 PIK3R4Q99570 1358 aa22.83■■□□□ 1.24
VIM-209ENST00000544301 PEAK1Q9H792 1746 aa22.83■■□□□ 1.24
VIM-209ENST00000544301 ELL2O00472 640 aaPredicted RBP22.82■■□□□ 1.24
VIM-209ENST00000544301 TWISTNBQ3B726 338 aaPredicted RBP22.82■■□□□ 1.24
VIM-209ENST00000544301 FER1L4A9Z1Z3 1794 aa22.82■■□□□ 1.24
VIM-209ENST00000544301 DCTN1Q14203 1278 aa22.82■■□□□ 1.24
VIM-209ENST00000544301 C8orf58Q8NAV2 365 aa22.82■■□□□ 1.24
VIM-209ENST00000544301 THEMISQ8N1K5 641 aaPredicted RBP22.81■■□□□ 1.24
VIM-209ENST00000544301 HSP90AB2PQ58FF8 381 aa22.8■■□□□ 1.24
VIM-209ENST00000544301 TTC21AQ8NDW8 1320 aa22.79■■□□□ 1.24
VIM-209ENST00000544301 ZBTB7BO15156 539 aaPredicted RBP22.79■■□□□ 1.24
VIM-209ENST00000544301 DIP2AQ14689 1571 aa22.79■■□□□ 1.24
VIM-209ENST00000544301 RGPD1P0DJD0 1748 aa22.79■■□□□ 1.24
VIM-209ENST00000544301 UPF2Q9HAU5 1272 aaKnown RBP22.78■■□□□ 1.24
VIM-209ENST00000544301 ABCC4O15439 1325 aa22.78■■□□□ 1.24
VIM-209ENST00000544301 TBC1D32Q96NH3 1257 aa22.77■■□□□ 1.24
VIM-209ENST00000544301 CHMP4BQ9H444 224 aaKnown RBP22.77■■□□□ 1.24
VIM-209ENST00000544301 NUCB1Q02818 461 aa22.76■■□□□ 1.23
VIM-209ENST00000544301 SOX12O15370 315 aa22.75■■□□□ 1.23
VIM-209ENST00000544301 RGPD8O14715 1765 aaPredicted RBP22.74■■□□□ 1.23
VIM-209ENST00000544301 MAP3K19Q56UN5 1328 aa22.74■■□□□ 1.23
VIM-209ENST00000544301 NGDNQ8NEJ9 315 aaKnown RBP22.74■■□□□ 1.23
VIM-209ENST00000544301 XRN1Q8IZH2 1706 aaKnown RBP22.74■■□□□ 1.23
VIM-209ENST00000544301 NFKBIBQ15653 356 aa22.73■■□□□ 1.23
VIM-209ENST00000544301 API5Q9BZZ5 524 aaKnown RBP22.73■■□□□ 1.23
VIM-209ENST00000544301 CHL1O00533 1208 aa22.72■■□□□ 1.23
VIM-209ENST00000544301 BECN1Q14457 450 aa22.72■■□□□ 1.23
VIM-209ENST00000544301 ARHGEF10O15013 1369 aa22.72■■□□□ 1.23
VIM-209ENST00000544301 MCM10Q7L590 875 aa22.72■■□□□ 1.23
VIM-209ENST00000544301 SBNO1A3KN83 1393 aa22.71■■□□□ 1.23
VIM-209ENST00000544301 FMN2Q9NZ56 1722 aa22.71■■□□□ 1.23
VIM-209ENST00000544301 CHD1LQ86WJ1 897 aa22.7■■□□□ 1.23
VIM-209ENST00000544301 C1orf115Q9H7X2 142 aa22.7■■□□□ 1.23
VIM-209ENST00000544301 RIMS1Q86UR5 1692 aaKnown RBP22.7■■□□□ 1.22
VIM-209ENST00000544301 FLT4P35916 1363 aa22.69■■□□□ 1.22
VIM-209ENST00000544301 LNPKQ9C0E8 428 aa22.69■■□□□ 1.22
VIM-209ENST00000544301 PIK3C2AO00443 1686 aa22.69■■□□□ 1.22
VIM-209ENST00000544301 ANKARQ7Z5J8 1434 aa22.68■■□□□ 1.22
VIM-209ENST00000544301 GCC1Q96CN9 775 aa22.68■■□□□ 1.22
VIM-209ENST00000544301 KIAA0232Q92628 1395 aa22.68■■□□□ 1.22
VIM-209ENST00000544301 KCNA6P17658 529 aa22.67■■□□□ 1.22
VIM-209ENST00000544301 KRT24Q2M2I5 525 aa22.67■■□□□ 1.22
VIM-209ENST00000544301 SIRT2Q8IXJ6 389 aa22.67■■□□□ 1.22
VIM-209ENST00000544301 KIF24Q5T7B8 1368 aa22.67■■□□□ 1.22
VIM-209ENST00000544301 CRB1P82279 1406 aa22.67■■□□□ 1.22
VIM-209ENST00000544301 HAP1P54257 671 aaPredicted RBP22.67■■□□□ 1.22
VIM-209ENST00000544301 AMPHP49418 695 aa22.65■■□□□ 1.22
VIM-209ENST00000544301 KDRP35968 1356 aa22.65■■□□□ 1.22
VIM-209ENST00000544301 MTHFSDQ2M296 383 aaKnown RBP22.64■■□□□ 1.22
VIM-209ENST00000544301 ANKRD45Q5TZF3 282 aa22.64■■□□□ 1.22
VIM-209ENST00000544301 MFAP1P55081 439 aaKnown RBP22.64■■□□□ 1.21
VIM-209ENST00000544301 C22orf23Q9BZE7 217 aa22.64■■□□□ 1.21
VIM-209ENST00000544301 CEP170BQ9Y4F5 1589 aaPredicted RBP22.63■■□□□ 1.21
VIM-209ENST00000544301 IGSF1Q8N6C5 1336 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms