RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-223ENST00000544268 PHF8Q9UPP1 1060 aa19.26■□□□□ 0.67
CHFR-223ENST00000544268 PNPLA6Q8IY17 1366 aa19.26■□□□□ 0.67
CHFR-223ENST00000544268 OVOS2A0A0J9YW53 1432 aa19.26■□□□□ 0.67
CHFR-223ENST00000544268 OVOS2Q6IE36 1432 aa19.26■□□□□ 0.67
CHFR-223ENST00000544268 EMILIN1Q9Y6C2 1016 aa19.26■□□□□ 0.67
CHFR-223ENST00000544268 TTC21AQ8NDW8 1320 aa19.25■□□□□ 0.67
CHFR-223ENST00000544268 ESCO1Q5FWF5 840 aa19.25■□□□□ 0.67
CHFR-223ENST00000544268 RUNDC1Q96C34 613 aa19.25■□□□□ 0.67
CHFR-223ENST00000544268 AATKQ6ZMQ8 1374 aa19.25■□□□□ 0.67
CHFR-223ENST00000544268 RRS1Q15050 365 aaKnown RBP19.24■□□□□ 0.67
CHFR-223ENST00000544268 TMEM94Q12767 1356 aa19.24■□□□□ 0.67
CHFR-223ENST00000544268 U2AF1L5P0DN76 240 aaPredicted RBP19.24■□□□□ 0.67
CHFR-223ENST00000544268 U2AF1Q01081 240 aaKnown RBP eCLIP19.24■□□□□ 0.67
CHFR-223ENST00000544268 DDRGK1Q96HY6 314 aa19.24■□□□□ 0.67
CHFR-223ENST00000544268 RLBP1P12271 317 aa19.23■□□□□ 0.67
CHFR-223ENST00000544268 C8orf34Q49A92 452 aa19.23■□□□□ 0.67
CHFR-223ENST00000544268 C19orf44Q9H6X5 657 aa19.23■□□□□ 0.67
CHFR-223ENST00000544268 U2SURPO15042 1029 aaKnown RBP19.22■□□□□ 0.67
CHFR-223ENST00000544268 CANXP27824 592 aaKnown RBP19.22■□□□□ 0.67
CHFR-223ENST00000544268 FAM43AQ8N2R8 423 aa19.22■□□□□ 0.67
CHFR-223ENST00000544268 DIAPH1O60610 1272 aaKnown RBP19.22■□□□□ 0.67
CHFR-223ENST00000544268 PIK3C2AO00443 1686 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 CLUAP1Q96AJ1 413 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 ORAI2Q96SN7 254 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 IQSEC2Q5JU85 1478 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 NFKBIBQ15653 356 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 ZMYND15Q9H091 742 aa19.21■□□□□ 0.67
CHFR-223ENST00000544268 RARSP54136 660 aaKnown RBP19.2■□□□□ 0.66
CHFR-223ENST00000544268 USP31Q70CQ4 1352 aa19.19■□□□□ 0.66
CHFR-223ENST00000544268 CDK12Q9NYV4 1490 aaPredicted RBP19.19■□□□□ 0.66
CHFR-223ENST00000544268 SOX12O15370 315 aa19.19■□□□□ 0.66
CHFR-223ENST00000544268 TSR2Q969E8 191 aaKnown RBP19.19■□□□□ 0.66
CHFR-223ENST00000544268 PHF23Q9BUL5 403 aaPredicted RBP19.19■□□□□ 0.66
CHFR-223ENST00000544268 NUTM2GQ5VZR2 741 aa19.18■□□□□ 0.66
CHFR-223ENST00000544268 C1orf167Q5SNV9 1468 aa19.17■□□□□ 0.66
CHFR-223ENST00000544268 NLRP6P59044 892 aa19.17■□□□□ 0.66
CHFR-223ENST00000544268 PSME1Q06323 249 aa19.16■□□□□ 0.66
CHFR-223ENST00000544268 ABTB2Q8N961 1025 aa19.16■□□□□ 0.66
CHFR-223ENST00000544268 NCOA3Q9Y6Q9 1424 aa19.16■□□□□ 0.66
CHFR-223ENST00000544268 ZNF335Q9H4Z2 1342 aaPredicted RBP19.16■□□□□ 0.66
CHFR-223ENST00000544268 FOXO3O43524 673 aa19.16■□□□□ 0.66
CHFR-223ENST00000544268 ATF3P18847 181 aa19.16■□□□□ 0.66
CHFR-223ENST00000544268 IL13P35225 146 aa19.14■□□□□ 0.66
CHFR-223ENST00000544268 FAM161AQ3B820 660 aa19.14■□□□□ 0.66
CHFR-223ENST00000544268 MARF1Q9Y4F3 1742 aaKnown RBP19.14■□□□□ 0.65
CHFR-223ENST00000544268 XPCQ01831 940 aaPredicted RBP19.14■□□□□ 0.65
CHFR-223ENST00000544268 PLEKHF1Q96S99 279 aa19.14■□□□□ 0.65
CHFR-223ENST00000544268 PCDHB15Q9Y5E8 787 aa19.14■□□□□ 0.65
CHFR-223ENST00000544268 MST1RQ04912 1400 aa19.14■□□□□ 0.65
CHFR-223ENST00000544268 DCCP43146 1447 aa19.13■□□□□ 0.65
CHFR-223ENST00000544268 XIRP1Q702N8 1843 aaKnown RBP19.13■□□□□ 0.65
CHFR-223ENST00000544268 NGEFQ8N5V2 710 aa19.13■□□□□ 0.65
CHFR-223ENST00000544268 PEAK1Q9H792 1746 aa19.13■□□□□ 0.65
CHFR-223ENST00000544268 PDE3AQ14432 1141 aa19.12■□□□□ 0.65
CHFR-223ENST00000544268 GLIPR1L2Q4G1C9 344 aa19.12■□□□□ 0.65
CHFR-223ENST00000544268 MAP3K19Q56UN5 1328 aa19.12■□□□□ 0.65
CHFR-223ENST00000544268 SEC24BO95487 1268 aa19.11■□□□□ 0.65
CHFR-223ENST00000544268 WDR63Q8IWG1 891 aa19.11■□□□□ 0.65
CHFR-223ENST00000544268 MSH6P52701 1360 aa19.11■□□□□ 0.65
CHFR-223ENST00000544268 USP54Q70EL1 1684 aa19.11■□□□□ 0.65
CHFR-223ENST00000544268 LRRC7Q96NW7 1537 aa19.1■□□□□ 0.65
CHFR-223ENST00000544268 HSP90AB2PQ58FF8 381 aa19.1■□□□□ 0.65
CHFR-223ENST00000544268 CADPS2Q86UW7 1296 aa19.1■□□□□ 0.65
CHFR-223ENST00000544268 FCHSD2O94868 740 aa19.1■□□□□ 0.65
CHFR-223ENST00000544268 HMOX1P09601 288 aa19.1■□□□□ 0.65
CHFR-223ENST00000544268 TRIM35Q9UPQ4 493 aa19.09■□□□□ 0.65
CHFR-223ENST00000544268 KIF1AQ12756 1690 aa19.09■□□□□ 0.65
CHFR-223ENST00000544268 EIF4A2Q14240 407 aaKnown RBP19.09■□□□□ 0.65
CHFR-223ENST00000544268 MAPK8IP3Q9UPT6 1336 aa19.08■□□□□ 0.65
CHFR-223ENST00000544268 PRKAR2BP31323 418 aa19.08■□□□□ 0.64
CHFR-223ENST00000544268 EXOSC9Q06265 439 aaKnown RBP19.08■□□□□ 0.64
CHFR-223ENST00000544268 TMPOP42166 694 aaKnown RBP19.07■□□□□ 0.64
CHFR-223ENST00000544268 KRT28Q7Z3Y7 464 aa19.07■□□□□ 0.64
CHFR-223ENST00000544268 CCDC27Q2M243 656 aa19.06■□□□□ 0.64
CHFR-223ENST00000544268 SBNO1A3KN83 1393 aa19.06■□□□□ 0.64
CHFR-223ENST00000544268 DDX17Q92841 729 aaKnown RBP19.06■□□□□ 0.64
CHFR-223ENST00000544268 PNNQ9H307 717 aaKnown RBP19.06■□□□□ 0.64
CHFR-223ENST00000544268 FLT4P35916 1363 aa19.06■□□□□ 0.64
CHFR-223ENST00000544268 AMPHP49418 695 aa19.05■□□□□ 0.64
CHFR-223ENST00000544268 TRPM3Q9HCF6 1732 aaPredicted RBP19.05■□□□□ 0.64
CHFR-223ENST00000544268 AEBP2Q6ZN18 517 aaPredicted RBP19.05■□□□□ 0.64
CHFR-223ENST00000544268 PDE4CQ08493 712 aa19.04■□□□□ 0.64
CHFR-223ENST00000544268 LMOD2Q6P5Q4 547 aa19.04■□□□□ 0.64
CHFR-223ENST00000544268 VSIG10Q8N0Z9 540 aa19.04■□□□□ 0.64
CHFR-223ENST00000544268 PHACTR3Q96KR7 559 aa19.03■□□□□ 0.64
CHFR-223ENST00000544268 USP19O94966 1318 aa19.03■□□□□ 0.64
CHFR-223ENST00000544268 NCBP3Q53F19 620 aaKnown RBP19.03■□□□□ 0.64
CHFR-223ENST00000544268 MYH16Q9H6N6 1097 aa19.03■□□□□ 0.64
CHFR-223ENST00000544268 RIPK4P57078 832 aa19.02■□□□□ 0.64
CHFR-223ENST00000544268 FGD1P98174 961 aa19.02■□□□□ 0.64
CHFR-223ENST00000544268 AEBP1Q8IUX7 1158 aa19.02■□□□□ 0.63
CHFR-223ENST00000544268 SSH1Q8WYL5 1049 aa19.02■□□□□ 0.63
CHFR-223ENST00000544268 NFAT5O94916 1531 aa19.02■□□□□ 0.63
CHFR-223ENST00000544268 HOXC9P31274 260 aa19.01■□□□□ 0.63
CHFR-223ENST00000544268 THUMPD2Q9BTF0 503 aaKnown RBP19.01■□□□□ 0.63
CHFR-223ENST00000544268 SMC4Q9NTJ3 1288 aa19.01■□□□□ 0.63
CHFR-223ENST00000544268 SULT6B1Q6IMI4 303 aa19.01■□□□□ 0.63
CHFR-223ENST00000544268 RGPD1P0DJD0 1748 aa19■□□□□ 0.63
CHFR-223ENST00000544268 PDZRN3Q9UPQ7 1066 aa19■□□□□ 0.63
CHFR-223ENST00000544268 LTN1O94822 1766 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms