RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 TTC39AQ5SRH9 613 aa12.28□□□□□ -0.44
PCDH9-204ENST00000544246 RUNDC1Q96C34 613 aa12.28□□□□□ -0.44
PCDH9-204ENST00000544246 TNMDQ9H2S6 317 aa12.28□□□□□ -0.44
PCDH9-204ENST00000544246 AEBP1Q8IUX7 1158 aa12.28□□□□□ -0.44
PCDH9-204ENST00000544246 SHTN1A0MZ66 631 aa12.27□□□□□ -0.44
PCDH9-204ENST00000544246 FIBPO43427 364 aa12.27□□□□□ -0.44
PCDH9-204ENST00000544246 FAM177A1Q8N128 213 aaPredicted RBP12.27□□□□□ -0.44
PCDH9-204ENST00000544246 GRIN2AQ12879 1464 aa12.27□□□□□ -0.44
PCDH9-204ENST00000544246 CCDC144AA2RUR9 1427 aa12.27□□□□□ -0.44
PCDH9-204ENST00000544246 CCDC57Q2TAC2 916 aa12.27□□□□□ -0.44
PCDH9-204ENST00000544246 RAPGEF3O95398 923 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 SOGA3Q5TF21 947 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 RAPGEF4Q8WZA2 1011 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 CCDC148Q8NFR7 591 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 NOL7Q9UMY1 257 aaKnown RBP12.27□□□□□ -0.45
PCDH9-204ENST00000544246 TRIM22Q8IYM9 498 aa12.27□□□□□ -0.45
PCDH9-204ENST00000544246 ST20-MTHFSA0A0A6YYL1 179 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 SSR1P43307 286 aaKnown RBP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 MINK1Q8N4C8 1332 aaPredicted RBP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 CCDC69A6NI79 296 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 VGFO15240 615 aaPredicted RBP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 POTEJP0CG39 1038 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 ATP2B2Q01814 1243 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 KIF6Q6ZMV9 814 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 GNL3LQ9NVN8 582 aaKnown RBP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 UQCRHLA0A096LP55 91 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 UQCRHP07919 91 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 CFAP45Q9UL16 551 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 KIAA1328Q86T90 577 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 DNAI2Q9GZS0 605 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 ERICH4A6NGS2 130 aa12.26□□□□□ -0.45
PCDH9-204ENST00000544246 MPHOSPH10O00566 681 aaKnown RBP12.26□□□□□ -0.45
PCDH9-204ENST00000544246 BMP2KQ9NSY1 1161 aaPredicted RBP12.25□□□□□ -0.45
PCDH9-204ENST00000544246 ARHGAP5Q13017 1502 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 KIAA0586Q9BVV6 1533 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 CETN2P41208 172 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 ANAPC15P60006 121 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 ERC1Q8IUD2 1116 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 KIF21AQ7Z4S6 1674 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 VPS8Q8N3P4 1428 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 NEK4P51957 841 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 CD109Q6YHK3 1445 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 ANKRD1Q15327 319 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 CCDC158Q5M9N0 1113 aa12.25□□□□□ -0.45
PCDH9-204ENST00000544246 ME1P48163 572 aa12.24□□□□□ -0.45
PCDH9-204ENST00000544246 TICAM2Q86XR7 235 aa12.24□□□□□ -0.45
PCDH9-204ENST00000544246 ABCA10Q8WWZ4 1543 aa12.24□□□□□ -0.45
PCDH9-204ENST00000544246 PPM1FP49593 454 aaPredicted RBP12.24□□□□□ -0.45
PCDH9-204ENST00000544246 GBP3Q9H0R5 595 aa12.24□□□□□ -0.45
PCDH9-204ENST00000544246 ATF3P18847 181 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 RUSC2Q8N2Y8 1516 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 EPB41L2O43491 1005 aaKnown RBP12.23□□□□□ -0.45
PCDH9-204ENST00000544246 PIP4K2BP78356 416 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 NACAP1Q9BZK3 213 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 GNAI3P08754 354 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 SPATA24Q86W54 205 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 ZNF397Q8NF99 534 aaPredicted RBP12.23□□□□□ -0.45
PCDH9-204ENST00000544246 CYP46A1Q9Y6A2 500 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 TMCO3Q6UWJ1 677 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 CCDC113Q9H0I3 377 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 PODXL2Q9NZ53 605 aa12.23□□□□□ -0.45
PCDH9-204ENST00000544246 CRACR2AQ9BSW2 395 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 GRIPAP1Q4V328 841 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 SMTNL1A8MU46 457 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 SURF6O75683 361 aaKnown RBP12.22□□□□□ -0.45
PCDH9-204ENST00000544246 DMRT2Q9Y5R5 561 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 ANKRD18BA2A2Z9 1011 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 KANK4Q5T7N3 995 aaPredicted RBP12.22□□□□□ -0.45
PCDH9-204ENST00000544246 AFAP1Q8N556 730 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 CNNM1Q9NRU3 951 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 EIF5P55010 431 aaKnown RBP12.22□□□□□ -0.45
PCDH9-204ENST00000544246 STK3Q13188 491 aa12.22□□□□□ -0.45
PCDH9-204ENST00000544246 SSBP05455 408 aaKnown RBP eCLIP12.21□□□□□ -0.45
PCDH9-204ENST00000544246 CCDC30Q5VVM6 783 aa12.21□□□□□ -0.45
PCDH9-204ENST00000544246 CEP57L1Q8IYX8 460 aa12.21□□□□□ -0.45
PCDH9-204ENST00000544246 PRKRIP1Q9H875 184 aaPredicted RBP12.21□□□□□ -0.45
PCDH9-204ENST00000544246 FEZ1Q99689 392 aa12.21□□□□□ -0.45
PCDH9-204ENST00000544246 TOP2BQ02880 1626 aa12.21□□□□□ -0.45
PCDH9-204ENST00000544246 WDR33Q9C0J8 1336 aaKnown RBP12.21□□□□□ -0.45
PCDH9-204ENST00000544246 GCOM1H8Y6P7 765 aaPredicted RBP12.21□□□□□ -0.45
PCDH9-204ENST00000544246 MYZAPP0CAP1 466 aa12.21□□□□□ -0.45
PCDH9-204ENST00000544246 SMC1AQ14683 1233 aaKnown RBP12.21□□□□□ -0.45
PCDH9-204ENST00000544246 FAM177BA6PVY3 158 aa12.21□□□□□ -0.46
PCDH9-204ENST00000544246 KRT85P78386 507 aa12.21□□□□□ -0.46
PCDH9-204ENST00000544246 DDX23Q9BUQ8 820 aaKnown RBP12.21□□□□□ -0.46
PCDH9-204ENST00000544246 CDKL5O76039 1030 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 ZNF76P36508 570 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 MICALCLQ6ZW33 695 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 NUP133Q8WUM0 1156 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 ARHGAP29Q52LW3 1261 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 PANK1Q8TE04 598 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 MCM3P25205 808 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 DDX11Q96FC9 970 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 MAP9Q49MG5 647 aa12.2□□□□□ -0.46
PCDH9-204ENST00000544246 HMOX1P09601 288 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 THEMISQ8N1K5 641 aaPredicted RBP12.19□□□□□ -0.46
PCDH9-204ENST00000544246 PDCL2Q8N4E4 241 aa12.19□□□□□ -0.46
PCDH9-204ENST00000544246 USP47Q96K76 1375 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms