RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, humanhuman

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6-222ENST00000543744 SLC26A8Q96RN1 970 aa22.64■■□□□ 1.22
PTPN6-222ENST00000543744 THUMPD2Q9BTF0 503 aaKnown RBP22.64■■□□□ 1.22
PTPN6-222ENST00000543744 TTC21BQ7Z4L5 1316 aa22.64■■□□□ 1.22
PTPN6-222ENST00000543744 ACEP12821 1306 aa22.64■■□□□ 1.21
PTPN6-222ENST00000543744 PLEKHG3A1L390 1219 aa22.64■■□□□ 1.21
PTPN6-222ENST00000543744 LMOD3Q0VAK6 560 aa22.64■■□□□ 1.21
PTPN6-222ENST00000543744 IFT57Q9NWB7 429 aa22.64■■□□□ 1.21
PTPN6-222ENST00000543744 TMEM57Q8N5G2 664 aa22.63■■□□□ 1.21
PTPN6-222ENST00000543744 VIRMAQ69YN4 1812 aaKnown RBP22.62■■□□□ 1.21
PTPN6-222ENST00000543744 HDAC1Q13547 482 aaPredicted RBP22.62■■□□□ 1.21
PTPN6-222ENST00000543744 BRPF1P55201 1214 aaPredicted RBP22.62■■□□□ 1.21
PTPN6-222ENST00000543744 NUTM2FA1L443 756 aa22.61■■□□□ 1.21
PTPN6-222ENST00000543744 PTPRUQ92729 1446 aa22.6■■□□□ 1.21
PTPN6-222ENST00000543744 TOPAZ1Q8N9V7 1692 aa22.6■■□□□ 1.21
PTPN6-222ENST00000543744 VAMP4O75379 141 aa22.6■■□□□ 1.21
PTPN6-222ENST00000543744 ZNF853P0CG23 659 aa22.6■■□□□ 1.21
PTPN6-222ENST00000543744 SLC4A3P48751 1232 aa22.59■■□□□ 1.21
PTPN6-222ENST00000543744 ZBTB40Q9NUA8 1239 aa22.59■■□□□ 1.21
PTPN6-222ENST00000543744 USP6P35125 1406 aa22.58■■□□□ 1.21
PTPN6-222ENST00000543744 NRKQ7Z2Y5 1582 aa22.58■■□□□ 1.21
PTPN6-222ENST00000543744 MBIPQ9NS73 344 aa22.58■■□□□ 1.21
PTPN6-222ENST00000543744 AMOTL2Q9Y2J4 779 aa22.58■■□□□ 1.21
PTPN6-222ENST00000543744 DEKP35659 375 aaKnown RBP22.58■■□□□ 1.2
PTPN6-222ENST00000543744 SLIT1O75093 1534 aa22.58■■□□□ 1.2
PTPN6-222ENST00000543744 USP19O94966 1318 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 SEC24BO95487 1268 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 CFAP44Q96MT7 982 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 TBX22Q9Y458 520 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 ARHGAP23Q9P227 1491 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 OVOS2A0A0J9YW53 1432 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 OVOS2Q6IE36 1432 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 PLPPR3Q6T4P5 718 aa22.57■■□□□ 1.2
PTPN6-222ENST00000543744 EIF4A2Q14240 407 aaKnown RBP22.56■■□□□ 1.2
PTPN6-222ENST00000543744 USP35Q9P2H5 1018 aa22.56■■□□□ 1.2
PTPN6-222ENST00000543744 MRPL50Q8N5N7 158 aaKnown RBP22.55■■□□□ 1.2
PTPN6-222ENST00000543744 TSPYL6Q8N831 410 aa22.55■■□□□ 1.2
PTPN6-222ENST00000543744 ARHGAP45Q92619 1136 aa22.55■■□□□ 1.2
PTPN6-222ENST00000543744 THEMISQ8N1K5 641 aaPredicted RBP22.55■■□□□ 1.2
PTPN6-222ENST00000543744 SULT6B1Q6IMI4 303 aa22.54■■□□□ 1.2
PTPN6-222ENST00000543744 FAM83GA6ND36 823 aa22.53■■□□□ 1.2
PTPN6-222ENST00000543744 ELL2O00472 640 aaPredicted RBP22.53■■□□□ 1.2
PTPN6-222ENST00000543744 TWISTNBQ3B726 338 aaPredicted RBP22.53■■□□□ 1.2
PTPN6-222ENST00000543744 SMC5Q8IY18 1101 aa22.53■■□□□ 1.2
PTPN6-222ENST00000543744 PTCH1Q13635 1447 aa22.52■■□□□ 1.2
PTPN6-222ENST00000543744 AEBP1Q8IUX7 1158 aa22.52■■□□□ 1.2
PTPN6-222ENST00000543744 UPF2Q9HAU5 1272 aaKnown RBP22.52■■□□□ 1.2
PTPN6-222ENST00000543744 CHMP4BQ9H444 224 aaKnown RBP22.52■■□□□ 1.19
PTPN6-222ENST00000543744 DLG5Q8TDM6 1919 aa22.52■■□□□ 1.19
PTPN6-222ENST00000543744 USP31Q70CQ4 1352 aa22.51■■□□□ 1.19
PTPN6-222ENST00000543744 SSH2Q76I76 1423 aa22.51■■□□□ 1.19
PTPN6-222ENST00000543744 DCTN1Q14203 1278 aa22.5■■□□□ 1.19
PTPN6-222ENST00000543744 TTC21AQ8NDW8 1320 aa22.5■■□□□ 1.19
PTPN6-222ENST00000543744 HSP90AB2PQ58FF8 381 aa22.5■■□□□ 1.19
PTPN6-222ENST00000543744 C8orf58Q8NAV2 365 aa22.5■■□□□ 1.19
PTPN6-222ENST00000543744 NALCNQ8IZF0 1738 aa22.49■■□□□ 1.19
PTPN6-222ENST00000543744 FER1L4A9Z1Z3 1794 aa22.49■■□□□ 1.19
PTPN6-222ENST00000543744 PIK3R4Q99570 1358 aa22.48■■□□□ 1.19
PTPN6-222ENST00000543744 ZBTB7BO15156 539 aaPredicted RBP22.48■■□□□ 1.19
PTPN6-222ENST00000543744 DIP2AQ14689 1571 aa22.47■■□□□ 1.19
PTPN6-222ENST00000543744 SOX12O15370 315 aa22.47■■□□□ 1.19
PTPN6-222ENST00000543744 NGDNQ8NEJ9 315 aaKnown RBP22.47■■□□□ 1.19
PTPN6-222ENST00000543744 PEAK1Q9H792 1746 aa22.45■■□□□ 1.19
PTPN6-222ENST00000543744 ABCC4O15439 1325 aa22.45■■□□□ 1.18
PTPN6-222ENST00000543744 API5Q9BZZ5 524 aaKnown RBP22.45■■□□□ 1.18
PTPN6-222ENST00000543744 NUCB1Q02818 461 aa22.44■■□□□ 1.18
PTPN6-222ENST00000543744 BECN1Q14457 450 aa22.44■■□□□ 1.18
PTPN6-222ENST00000543744 TBC1D32Q96NH3 1257 aa22.44■■□□□ 1.18
PTPN6-222ENST00000543744 MAP3K19Q56UN5 1328 aa22.44■■□□□ 1.18
PTPN6-222ENST00000543744 HAP1P54257 671 aaPredicted RBP22.43■■□□□ 1.18
PTPN6-222ENST00000543744 RGPD1P0DJD0 1748 aa22.42■■□□□ 1.18
PTPN6-222ENST00000543744 CHL1O00533 1208 aa22.41■■□□□ 1.18
PTPN6-222ENST00000543744 MCM10Q7L590 875 aa22.41■■□□□ 1.18
PTPN6-222ENST00000543744 ARHGEF10O15013 1369 aa22.41■■□□□ 1.18
PTPN6-222ENST00000543744 NFKBIBQ15653 356 aa22.41■■□□□ 1.18
PTPN6-222ENST00000543744 SBNO1A3KN83 1393 aa22.41■■□□□ 1.18
PTPN6-222ENST00000543744 CHD1LQ86WJ1 897 aa22.4■■□□□ 1.18
PTPN6-222ENST00000543744 FLT4P35916 1363 aa22.4■■□□□ 1.18
PTPN6-222ENST00000543744 GCC1Q96CN9 775 aa22.4■■□□□ 1.18
PTPN6-222ENST00000543744 C1orf115Q9H7X2 142 aa22.39■■□□□ 1.17
PTPN6-222ENST00000543744 XRN1Q8IZH2 1706 aaKnown RBP22.39■■□□□ 1.17
PTPN6-222ENST00000543744 KCNA6P17658 529 aa22.38■■□□□ 1.17
PTPN6-222ENST00000543744 LNPKQ9C0E8 428 aa22.38■■□□□ 1.17
PTPN6-222ENST00000543744 ANKARQ7Z5J8 1434 aa22.38■■□□□ 1.17
PTPN6-222ENST00000543744 AMPHP49418 695 aa22.38■■□□□ 1.17
PTPN6-222ENST00000543744 KIAA0232Q92628 1395 aa22.37■■□□□ 1.17
PTPN6-222ENST00000543744 RGPD8O14715 1765 aaPredicted RBP22.36■■□□□ 1.17
PTPN6-222ENST00000543744 KIF24Q5T7B8 1368 aa22.36■■□□□ 1.17
PTPN6-222ENST00000543744 NLRP6P59044 892 aa22.35■■□□□ 1.17
PTPN6-222ENST00000543744 KRT24Q2M2I5 525 aa22.35■■□□□ 1.17
PTPN6-222ENST00000543744 ANKRD45Q5TZF3 282 aa22.35■■□□□ 1.17
PTPN6-222ENST00000543744 RIMS1Q86UR5 1692 aaKnown RBP22.34■■□□□ 1.17
PTPN6-222ENST00000543744 RTF1Q92541 710 aaKnown RBP22.34■■□□□ 1.17
PTPN6-222ENST00000543744 FMN2Q9NZ56 1722 aa22.34■■□□□ 1.17
PTPN6-222ENST00000543744 KDRP35968 1356 aa22.34■■□□□ 1.17
PTPN6-222ENST00000543744 CRB1P82279 1406 aa22.34■■□□□ 1.17
PTPN6-222ENST00000543744 PIK3C2AO00443 1686 aa22.33■■□□□ 1.17
PTPN6-222ENST00000543744 TRHP20396 242 aaPredicted RBP22.33■■□□□ 1.17
PTPN6-222ENST00000543744 MFAP1P55081 439 aaKnown RBP22.33■■□□□ 1.17
PTPN6-222ENST00000543744 MTHFSDQ2M296 383 aaKnown RBP22.33■■□□□ 1.17
PTPN6-222ENST00000543744 SIRT2Q8IXJ6 389 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms