RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SETD1BQ9UPS6 1966 aaKnown RBP12.63□□□□□ -0.39
SS18-205ENST00000542420 ZBTB47Q9UFB7 747 aaPredicted RBP12.63□□□□□ -0.39
SS18-205ENST00000542420 PEAK1Q9H792 1746 aa12.63□□□□□ -0.39
SS18-205ENST00000542420 RGPD8O14715 1765 aaPredicted RBP12.62□□□□□ -0.39
SS18-205ENST00000542420 DZIP1LQ8IYY4 767 aaKnown RBP12.62□□□□□ -0.39
SS18-205ENST00000542420 RWDD1Q9H446 243 aaPredicted RBP12.62□□□□□ -0.39
SS18-205ENST00000542420 DDX19BQ9UMR2 479 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 ADAMTSL3P82987 1691 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 PRKAR2BP31323 418 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 GNAI1P63096 354 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 NME9Q86XW9 330 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 ARHGAP45Q92619 1136 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 COG6Q9Y2V7 657 aa12.62□□□□□ -0.39
SS18-205ENST00000542420 HAP1P54257 671 aaPredicted RBP12.61□□□□□ -0.39
SS18-205ENST00000542420 EXOSC9Q06265 439 aaKnown RBP12.61□□□□□ -0.39
SS18-205ENST00000542420 PANK1Q8TE04 598 aa12.61□□□□□ -0.39
SS18-205ENST00000542420 MARF1Q9Y4F3 1742 aaKnown RBP12.61□□□□□ -0.39
SS18-205ENST00000542420 ZNF853P0CG23 659 aa12.61□□□□□ -0.39
SS18-205ENST00000542420 PIK3C2AO00443 1686 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 ATF7IPQ6VMQ6 1270 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 ARHGEF10O15013 1369 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 ADRA2BP18089 450 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 HDAC1Q13547 482 aaPredicted RBP12.6□□□□□ -0.39
SS18-205ENST00000542420 C8orf34Q49A92 452 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 FRAT1Q92837 279 aaPredicted RBP12.6□□□□□ -0.39
SS18-205ENST00000542420 SMC4Q9NTJ3 1288 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 ACEP12821 1306 aa12.6□□□□□ -0.39
SS18-205ENST00000542420 FTSJ3Q8IY81 847 aaKnown RBP12.59□□□□□ -0.39
SS18-205ENST00000542420 IGHDP01880 384 aa12.59□□□□□ -0.39
SS18-205ENST00000542420 EMILIN1Q9Y6C2 1016 aa12.59□□□□□ -0.39
SS18-205ENST00000542420 CACNA1FO60840 1977 aa12.58□□□□□ -0.4
SS18-205ENST00000542420 PHRF1Q9P1Y6 1649 aaKnown RBP12.58□□□□□ -0.4
SS18-205ENST00000542420 SSH1Q8WYL5 1049 aa12.58□□□□□ -0.4
SS18-205ENST00000542420 AMOTL2Q9Y2J4 779 aa12.58□□□□□ -0.4
SS18-205ENST00000542420 RLBP1P12271 317 aa12.57□□□□□ -0.4
SS18-205ENST00000542420 SBNO1A3KN83 1393 aa12.57□□□□□ -0.4
SS18-205ENST00000542420 TSR2Q969E8 191 aaKnown RBP12.57□□□□□ -0.4
SS18-205ENST00000542420 LRRC37A3O60309 1634 aa12.56□□□□□ -0.4
SS18-205ENST00000542420 CFAP44Q96MT7 982 aa12.56□□□□□ -0.4
SS18-205ENST00000542420 TRIM27P14373 513 aa12.56□□□□□ -0.4
SS18-205ENST00000542420 SENP3Q9H4L4 574 aaPredicted RBP12.56□□□□□ -0.4
SS18-205ENST00000542420 FLT4P35916 1363 aa12.56□□□□□ -0.4
SS18-205ENST00000542420 KIAA0232Q92628 1395 aa12.56□□□□□ -0.4
SS18-205ENST00000542420 KDRP35968 1356 aa12.55□□□□□ -0.4
SS18-205ENST00000542420 PCDHB15Q9Y5E8 787 aa12.55□□□□□ -0.4
SS18-205ENST00000542420 IL27Q8NEV9 243 aa12.54□□□□□ -0.4
SS18-205ENST00000542420 NWD1Q149M9 1564 aa12.54□□□□□ -0.4
SS18-205ENST00000542420 RTL1A6NKG5 1358 aa12.54□□□□□ -0.4
SS18-205ENST00000542420 VAMP4O75379 141 aa12.54□□□□□ -0.4
SS18-205ENST00000542420 PHACTR3Q96KR7 559 aa12.54□□□□□ -0.4
SS18-205ENST00000542420 N4BP2Q86UW6 1770 aaPredicted RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 PPM1GO15355 546 aaPredicted RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 CEBPAP49715 358 aaPredicted RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 EIF4A2Q14240 407 aaKnown RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 NOB1Q9ULX3 412 aaKnown RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 MRPL50Q8N5N7 158 aaKnown RBP12.53□□□□□ -0.4
SS18-205ENST00000542420 USP35Q9P2H5 1018 aa12.53□□□□□ -0.4
SS18-205ENST00000542420 HTATSF1O43719 755 aaKnown RBP12.52□□□□□ -0.41
SS18-205ENST00000542420 SMC5Q8IY18 1101 aa12.52□□□□□ -0.41
SS18-205ENST00000542420 ZBTB40Q9NUA8 1239 aa12.52□□□□□ -0.41
SS18-205ENST00000542420 ZRANB1Q9UGI0 708 aa12.52□□□□□ -0.41
SS18-205ENST00000542420 ABCC4O15439 1325 aa12.52□□□□□ -0.41
SS18-205ENST00000542420 SOS1Q07889 1333 aaPredicted RBP12.52□□□□□ -0.41
SS18-205ENST00000542420 HMOX1P09601 288 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 SLC26A8Q96RN1 970 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 BCL2L13Q9BXK5 485 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 API5Q9BZZ5 524 aaKnown RBP12.51□□□□□ -0.41
SS18-205ENST00000542420 NCKAP5LQ9HCH0 1330 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 PAK3O75914 559 aaPredicted RBP12.51□□□□□ -0.41
SS18-205ENST00000542420 RRS1Q15050 365 aaKnown RBP12.51□□□□□ -0.41
SS18-205ENST00000542420 PDZRN3Q9UPQ7 1066 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 LTN1O94822 1766 aa12.51□□□□□ -0.41
SS18-205ENST00000542420 RGS3P49796 1198 aa12.5□□□□□ -0.41
SS18-205ENST00000542420 MBIPQ9NS73 344 aa12.5□□□□□ -0.41
SS18-205ENST00000542420 TNNQ9UQP3 1299 aa12.5□□□□□ -0.41
SS18-205ENST00000542420 KIF1AQ12756 1690 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 ITPRIPQ8IWB1 547 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 ADGRL3Q9HAR2 1447 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 IGSF1Q8N6C5 1336 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 ANKLE2Q86XL3 938 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 TMEM57Q8N5G2 664 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 BABAM1Q9NWV8 329 aa12.49□□□□□ -0.41
SS18-205ENST00000542420 CRB1P82279 1406 aa12.48□□□□□ -0.41
SS18-205ENST00000542420 CHL1O00533 1208 aa12.48□□□□□ -0.41
SS18-205ENST00000542420 TWISTNBQ3B726 338 aaPredicted RBP12.48□□□□□ -0.41
SS18-205ENST00000542420 NPM2Q86SE8 214 aaKnown RBP12.48□□□□□ -0.41
SS18-205ENST00000542420 EIF5BO60841 1220 aaKnown RBP12.48□□□□□ -0.41
SS18-205ENST00000542420 FBLN1P23142 703 aa12.48□□□□□ -0.41
SS18-205ENST00000542420 NGDNQ8NEJ9 315 aaKnown RBP12.48□□□□□ -0.41
SS18-205ENST00000542420 GCC1Q96CN9 775 aa12.48□□□□□ -0.41
SS18-205ENST00000542420 MAP3K19Q56UN5 1328 aa12.47□□□□□ -0.41
SS18-205ENST00000542420 SULT6B1Q6IMI4 303 aa12.47□□□□□ -0.41
SS18-205ENST00000542420 GAS2L2Q8NHY3 880 aa12.47□□□□□ -0.41
SS18-205ENST00000542420 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.47□□□□□ -0.41
SS18-205ENST00000542420 UPF2Q9HAU5 1272 aaKnown RBP12.46□□□□□ -0.41
SS18-205ENST00000542420 PTPRCP08575 1304 aa12.46□□□□□ -0.41
SS18-205ENST00000542420 LMTK3Q96Q04 1460 aa12.46□□□□□ -0.41
SS18-205ENST00000542420 FAM208AQ9UK61 1670 aaKnown RBP12.46□□□□□ -0.41
SS18-205ENST00000542420 NBR1Q14596 966 aa12.46□□□□□ -0.41
SS18-205ENST00000542420 SKAP1Q86WV1 359 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms