RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 HSP90AB2PQ58FF8 381 aa18.44■□□□□ 0.54
SFSWAP-210ENST00000541286 EDC4Q6P2E9 1401 aaKnown RBP18.44■□□□□ 0.54
SFSWAP-210ENST00000541286 ITSN1Q15811 1721 aa18.43■□□□□ 0.54
SFSWAP-210ENST00000541286 U2SURPO15042 1029 aaKnown RBP18.43■□□□□ 0.54
SFSWAP-210ENST00000541286 BCAR3O75815 825 aa18.41■□□□□ 0.54
SFSWAP-210ENST00000541286 ANKARQ7Z5J8 1434 aa18.41■□□□□ 0.54
SFSWAP-210ENST00000541286 HMOX1P09601 288 aa18.41■□□□□ 0.54
SFSWAP-210ENST00000541286 DUSP27Q5VZP5 1158 aa18.41■□□□□ 0.54
SFSWAP-210ENST00000541286 SSH2Q76I76 1423 aa18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 MS4A1P11836 297 aa18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 SPINK5Q9NQ38 1064 aaPredicted RBP18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 RRP7AQ9Y3A4 280 aaKnown RBP18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 NINLQ9Y2I6 1382 aa18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.4■□□□□ 0.54
SFSWAP-210ENST00000541286 AKAP12Q02952 1782 aa18.39■□□□□ 0.54
SFSWAP-210ENST00000541286 USHBP1Q8N6Y0 703 aa18.39■□□□□ 0.53
SFSWAP-210ENST00000541286 MAP3K19Q56UN5 1328 aa18.39■□□□□ 0.53
SFSWAP-210ENST00000541286 PKNOX2Q96KN3 472 aa18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 MON2Q7Z3U7 1717 aa18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 PIK3C2AO00443 1686 aa18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 NUTM2BA6NNL0 878 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 NUTM2EB1AL46 878 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 NUTM2AQ8IVF1 878 aaPredicted RBP18.38■□□□□ 0.53
SFSWAP-210ENST00000541286 CERKQ8TCT0 537 aa18.37■□□□□ 0.53
SFSWAP-210ENST00000541286 AXIN2Q9Y2T1 843 aa18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 EP400Q96L91 3159 aa18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 AEBP1Q8IUX7 1158 aa18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 VSIG10Q8N0Z9 540 aa18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 MAP2P11137 1827 aaKnown RBP18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 GCP02774 474 aa18.36■□□□□ 0.53
SFSWAP-210ENST00000541286 NPHP3Q7Z494 1330 aa18.35■□□□□ 0.53
SFSWAP-210ENST00000541286 U2AF1L5P0DN76 240 aaPredicted RBP18.35■□□□□ 0.53
SFSWAP-210ENST00000541286 U2AF1Q01081 240 aaKnown RBP eCLIP18.35■□□□□ 0.535e-8■■■□□ 18.1
SFSWAP-210ENST00000541286 LRRC59Q96AG4 307 aaKnown RBP18.34■□□□□ 0.53
SFSWAP-210ENST00000541286 ADAMTS2O95450 1211 aa18.34■□□□□ 0.53
SFSWAP-210ENST00000541286 AMPHP49418 695 aa18.34■□□□□ 0.53
SFSWAP-210ENST00000541286 KIF20BQ96Q89 1820 aa18.34■□□□□ 0.53
SFSWAP-210ENST00000541286 NRKQ7Z2Y5 1582 aa18.34■□□□□ 0.53
SFSWAP-210ENST00000541286 HAP1P54257 671 aaPredicted RBP18.33■□□□□ 0.53
SFSWAP-210ENST00000541286 BCL2L13Q9BXK5 485 aa18.33■□□□□ 0.53
SFSWAP-210ENST00000541286 CENPQQ7L2Z9 268 aaPredicted RBP18.33■□□□□ 0.52
SFSWAP-210ENST00000541286 DDRGK1Q96HY6 314 aa18.33■□□□□ 0.52
SFSWAP-210ENST00000541286 OVOS2A0A0J9YW53 1432 aa18.33■□□□□ 0.52
SFSWAP-210ENST00000541286 OVOS2Q6IE36 1432 aa18.33■□□□□ 0.52
SFSWAP-210ENST00000541286 BLMP54132 1417 aaPredicted RBP18.32■□□□□ 0.52
SFSWAP-210ENST00000541286 SLKQ9H2G2 1235 aaPredicted RBP18.32■□□□□ 0.52
SFSWAP-210ENST00000541286 ROBO1Q9Y6N7 1651 aa18.32■□□□□ 0.52
SFSWAP-210ENST00000541286 SLFN5Q08AF3 891 aa18.31■□□□□ 0.52
SFSWAP-210ENST00000541286 COG6Q9Y2V7 657 aa18.31■□□□□ 0.52
SFSWAP-210ENST00000541286 SPATA31A3Q5VYP0 1347 aa18.31■□□□□ 0.52
SFSWAP-210ENST00000541286 TOM1O60784 492 aa18.3■□□□□ 0.52
SFSWAP-210ENST00000541286 PANK1Q8TE04 598 aa18.3■□□□□ 0.52
SFSWAP-210ENST00000541286 DCCP43146 1447 aa18.3■□□□□ 0.52
SFSWAP-210ENST00000541286 NPC1L1Q9UHC9 1359 aa18.3■□□□□ 0.52
SFSWAP-210ENST00000541286 SPRYD3Q8NCJ5 442 aa18.3■□□□□ 0.52
SFSWAP-210ENST00000541286 PXDNQ92626 1479 aa18.29■□□□□ 0.52
SFSWAP-210ENST00000541286 RRAGDQ9NQL2 400 aaPredicted RBP18.29■□□□□ 0.52
SFSWAP-210ENST00000541286 TTC21AQ8NDW8 1320 aa18.29■□□□□ 0.52
SFSWAP-210ENST00000541286 EIF4A2Q14240 407 aaKnown RBP18.29■□□□□ 0.52
SFSWAP-210ENST00000541286 CLUAP1Q96AJ1 413 aa18.29■□□□□ 0.52
SFSWAP-210ENST00000541286 FAM161AQ3B820 660 aa18.28■□□□□ 0.52
SFSWAP-210ENST00000541286 NAP1L5Q96NT1 182 aaPredicted RBP18.28■□□□□ 0.52
SFSWAP-210ENST00000541286 RSPH6AQ9H0K4 717 aa18.28■□□□□ 0.52
SFSWAP-210ENST00000541286 SOS2Q07890 1332 aaPredicted RBP18.28■□□□□ 0.52
SFSWAP-210ENST00000541286 GZF1Q9H116 711 aaPredicted RBP18.27■□□□□ 0.52
SFSWAP-210ENST00000541286 NCOA3Q9Y6Q9 1424 aa18.27■□□□□ 0.52
SFSWAP-210ENST00000541286 HSPA1LP34931 641 aa18.27■□□□□ 0.52
SFSWAP-210ENST00000541286 MARF1Q9Y4F3 1742 aaKnown RBP18.27■□□□□ 0.51
SFSWAP-210ENST00000541286 DIAPH1O60610 1272 aaKnown RBP18.27■□□□□ 0.51
SFSWAP-210ENST00000541286 PEAK1Q9H792 1746 aa18.26■□□□□ 0.51
SFSWAP-210ENST00000541286 PHACTR3Q96KR7 559 aa18.26■□□□□ 0.51
SFSWAP-210ENST00000541286 KIAA0232Q92628 1395 aa18.26■□□□□ 0.51
SFSWAP-210ENST00000541286 HOXC9P31274 260 aa18.26■□□□□ 0.51
SFSWAP-210ENST00000541286 MED1Q15648 1581 aaPredicted RBP18.26■□□□□ 0.51
SFSWAP-210ENST00000541286 STRN4Q9NRL3 753 aa18.25■□□□□ 0.51
SFSWAP-210ENST00000541286 KDM2BQ8NHM5 1336 aa18.25■□□□□ 0.51
SFSWAP-210ENST00000541286 SRCAPQ6ZRS2 3230 aa18.25■□□□□ 0.51
SFSWAP-210ENST00000541286 NSD2O96028 1365 aa18.25■□□□□ 0.51
SFSWAP-210ENST00000541286 SULT6B1Q6IMI4 303 aa18.25■□□□□ 0.51
SFSWAP-210ENST00000541286 IGHDP01880 384 aa18.24■□□□□ 0.51
SFSWAP-210ENST00000541286 TRPM3Q9HCF6 1732 aaPredicted RBP18.24■□□□□ 0.51
SFSWAP-210ENST00000541286 TNS3Q68CZ2 1445 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 IL13P35225 146 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 ZMYND15Q9H091 742 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 C8orf34Q49A92 452 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 CFAP53Q96M91 514 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 THUMPD2Q9BTF0 503 aaKnown RBP18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 E9PSI1 815 aa18.23■□□□□ 0.51
SFSWAP-210ENST00000541286 PRKAR2BP31323 418 aa18.22■□□□□ 0.51
SFSWAP-210ENST00000541286 PRDM11Q9NQV5 511 aa18.22■□□□□ 0.51
SFSWAP-210ENST00000541286 NBPF6Q5VWK0 638 aa18.22■□□□□ 0.51
SFSWAP-210ENST00000541286 NBPF4Q96M43 638 aa18.22■□□□□ 0.51
SFSWAP-210ENST00000541286 EYA1Q99502 592 aa18.22■□□□□ 0.51
SFSWAP-210ENST00000541286 FAM83GA6ND36 823 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 ARHGEF25Q86VW2 580 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 FAM43AQ8N2R8 423 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 USP31Q70CQ4 1352 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 TNNQ9UQP3 1299 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 ZNF521Q96K83 1311 aa18.21■□□□□ 0.51
SFSWAP-210ENST00000541286 DCTN1Q14203 1278 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 125.3 ms