RNA–Protein interactions for RNA: ENST00000540998.5

CDC42SE1-207, Transcript of CDC42 small effector 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CDC42SE1, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42SE1-207ENST00000540998 ABCC3O15438 1527 aa12.9□□□□□ -0.34
CDC42SE1-207ENST00000540998 NEXMIFQ5QGS0 1516 aa12.9□□□□□ -0.34
CDC42SE1-207ENST00000540998 SNX21Q969T3 373 aa12.9□□□□□ -0.34
CDC42SE1-207ENST00000540998 SOX12O15370 315 aa12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 TWISTNBQ3B726 338 aaPredicted RBP12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 TSHZ3Q63HK5 1081 aa12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 MCTP1Q6DN14 999 aa12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 TRIM44Q96DX7 344 aaPredicted RBP12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 MYO5BQ9ULV0 1848 aa12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 HDGFL2Q7Z4V5 671 aaPredicted RBP12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 GBP4Q96PP9 640 aa12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 DDX49Q9Y6V7 483 aaKnown RBP12.89□□□□□ -0.35
CDC42SE1-207ENST00000540998 ZBTB7CA1YPR0 619 aa12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 ZGPATQ8N5A5 531 aaKnown RBP12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 LMTK2Q8IWU2 1503 aa12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 IL16Q14005 1332 aa12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 RPGRIP1LQ68CZ1 1315 aa12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 RBM27Q9P2N5 1060 aaKnown RBP12.88□□□□□ -0.35
CDC42SE1-207ENST00000540998 NFE2L2Q16236 605 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 ALDH1L2Q3SY69 923 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 AEBP1Q8IUX7 1158 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 NUTM2FA1L443 756 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 FCHSD2O94868 740 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 BAG4O95429 457 aaKnown RBP12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 PLEKHM2Q8IWE5 1019 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 CFAP74Q9C0B2 1584 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 PTPRMP28827 1452 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 TPRNQ4KMQ1 711 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 CAVIN1Q6NZI2 390 aaKnown RBP12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 NOL8Q76FK4 1167 aaKnown RBP12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 MIS18AQ9NYP9 233 aa12.87□□□□□ -0.35
CDC42SE1-207ENST00000540998 POGZQ7Z3K3 1410 aa12.86□□□□□ -0.35
CDC42SE1-207ENST00000540998 FOXD4L6Q3SYB3 417 aaPredicted RBP12.86□□□□□ -0.35
CDC42SE1-207ENST00000540998 FOXD4L3Q6VB84 417 aaPredicted RBP12.86□□□□□ -0.35
CDC42SE1-207ENST00000540998 YTHDC2Q9H6S0 1430 aaKnown RBP12.86□□□□□ -0.35
CDC42SE1-207ENST00000540998 STAG3Q9UJ98 1225 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 HECW2Q9P2P5 1572 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 CDC45O75419 566 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 FAM135BQ49AJ0 1406 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 NASPP49321 788 aaPredicted RBP12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 MCM10Q7L590 875 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 GCC1Q96CN9 775 aa12.85□□□□□ -0.35
CDC42SE1-207ENST00000540998 DTNBO60941 627 aa12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 NPM1P06748 294 aaKnown RBP eCLIP12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 MED14O60244 1454 aa12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 PIK3C2BO00750 1634 aa12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 PNPLA6Q8IY17 1366 aa12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 ABCC4O15439 1325 aa12.84□□□□□ -0.35
CDC42SE1-207ENST00000540998 KNDC1Q76NI1 1749 aa12.83□□□□□ -0.35
CDC42SE1-207ENST00000540998 VSIG10Q8N0Z9 540 aa12.83□□□□□ -0.35
CDC42SE1-207ENST00000540998 ARID3AQ99856 593 aa12.83□□□□□ -0.35
CDC42SE1-207ENST00000540998 NSFL1CQ9UNZ2 370 aaKnown RBP12.83□□□□□ -0.35
CDC42SE1-207ENST00000540998 HSP90AA2PQ14568 343 aaPredicted RBP12.83□□□□□ -0.36
CDC42SE1-207ENST00000540998 YEATS2Q9ULM3 1422 aa12.83□□□□□ -0.36
CDC42SE1-207ENST00000540998 IL13P35225 146 aa12.83□□□□□ -0.36
CDC42SE1-207ENST00000540998 MPNDQ8N594 471 aa12.83□□□□□ -0.36
CDC42SE1-207ENST00000540998 MEIS3Q99687 375 aa12.83□□□□□ -0.36
CDC42SE1-207ENST00000540998 SDSP20132 328 aa12.82□□□□□ -0.36
CDC42SE1-207ENST00000540998 CIZ1Q9ULV3 898 aaPredicted RBP12.82□□□□□ -0.36
CDC42SE1-207ENST00000540998 MAP2P11137 1827 aaKnown RBP12.82□□□□□ -0.36
CDC42SE1-207ENST00000540998 PRPF40AO75400 957 aaKnown RBP12.82□□□□□ -0.36
CDC42SE1-207ENST00000540998 F6X3S4 739 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 GNAI1P63096 354 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 MLECQ14165 292 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 NCBP3Q53F19 620 aaKnown RBP12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 TTC22Q5TAA0 569 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 PUS7Q96PZ0 661 aaKnown RBP12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 RBSNQ9H1K0 784 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 SLC4A10Q6U841 1118 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 USP26Q9BXU7 913 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 PTCH1Q13635 1447 aa12.81□□□□□ -0.36
CDC42SE1-207ENST00000540998 ZNF853P0CG23 659 aa12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 RBM10P98175 930 aaKnown RBP12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 TXNDC2Q86VQ3 553 aa12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 IFT57Q9NWB7 429 aa12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 PRIM1P49642 420 aaKnown RBP12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 NECTIN2Q92692 538 aa12.8□□□□□ -0.36
CDC42SE1-207ENST00000540998 MSH6P52701 1360 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 ZSCAN23Q3MJ62 389 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 KIAA1211Q6ZU35 1233 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 RNF214Q8ND24 703 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 ZDHHC9Q9Y397 364 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 GPT2Q8TD30 523 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 LMBRD1Q9NUN5 540 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 FOXO3O43524 673 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 SULT6B1Q6IMI4 303 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 CFAP44Q96MT7 982 aa12.79□□□□□ -0.36
CDC42SE1-207ENST00000540998 G2E3Q7L622 706 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 DCTPP1Q9H773 170 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 MLH3Q9UHC1 1453 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 ARHGEF40Q8TER5 1519 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 GOLGA6L22H0YM25 854 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 XPCQ01831 940 aaPredicted RBP12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 KLHL40Q2TBA0 621 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 CEP85Q6P2H3 762 aa12.78□□□□□ -0.36
CDC42SE1-207ENST00000540998 SKOR2Q2VWA4 1001 aaPredicted RBP12.77□□□□□ -0.36
CDC42SE1-207ENST00000540998 EXOC6BQ9Y2D4 811 aa12.77□□□□□ -0.36
CDC42SE1-207ENST00000540998 RIMS2Q9UQ26 1411 aa12.77□□□□□ -0.36
CDC42SE1-207ENST00000540998 PIK3R4Q99570 1358 aa12.77□□□□□ -0.36
CDC42SE1-207ENST00000540998 ARHGAP45Q92619 1136 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms