RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FRAT1Q92837 279 aaPredicted RBP17.75■□□□□ 0.43
RTN3-210ENST00000540798 TTC21AQ8NDW8 1320 aa17.75■□□□□ 0.43
RTN3-210ENST00000540798 SKAP1Q86WV1 359 aa17.75■□□□□ 0.43
RTN3-210ENST00000540798 TNNQ9UQP3 1299 aa17.74■□□□□ 0.43
RTN3-210ENST00000540798 VIRMAQ69YN4 1812 aaKnown RBP17.73■□□□□ 0.43
RTN3-210ENST00000540798 IGHDP01880 384 aa17.73■□□□□ 0.43
RTN3-210ENST00000540798 HMOX1P09601 288 aa17.73■□□□□ 0.43
RTN3-210ENST00000540798 BCL2L13Q9BXK5 485 aa17.72■□□□□ 0.43
RTN3-210ENST00000540798 NEFMP07197 916 aa17.72■□□□□ 0.43
RTN3-210ENST00000540798 ZKSCAN2Q63HK3 967 aa17.72■□□□□ 0.43
RTN3-210ENST00000540798 ZNF853P0CG23 659 aa17.71■□□□□ 0.43
RTN3-210ENST00000540798 SSH1Q8WYL5 1049 aa17.71■□□□□ 0.43
RTN3-210ENST00000540798 PLPPR3Q6T4P5 718 aa17.7■□□□□ 0.42
RTN3-210ENST00000540798 BRPF1P55201 1214 aaPredicted RBP17.7■□□□□ 0.42
RTN3-210ENST00000540798 CALD1Q05682 793 aaKnown RBP17.7■□□□□ 0.42
RTN3-210ENST00000540798 ALDH1L2Q3SY69 923 aa17.7■□□□□ 0.42
RTN3-210ENST00000540798 ANP32AP39687 249 aaKnown RBP17.7■□□□□ 0.42
RTN3-210ENST00000540798 EIF4A2Q14240 407 aaKnown RBP17.7■□□□□ 0.42
RTN3-210ENST00000540798 MVPQ14764 893 aaKnown RBP17.7■□□□□ 0.42
RTN3-210ENST00000540798 ZNF428Q96B54 188 aa17.7■□□□□ 0.42
RTN3-210ENST00000540798 KCNA6P17658 529 aa17.69■□□□□ 0.42
RTN3-210ENST00000540798 SETD1BQ9UPS6 1966 aaKnown RBP17.69■□□□□ 0.42
RTN3-210ENST00000540798 NUTM2FA1L443 756 aa17.69■□□□□ 0.42
RTN3-210ENST00000540798 IFT57Q9NWB7 429 aa17.69■□□□□ 0.42
RTN3-210ENST00000540798 IPO9Q96P70 1041 aaKnown RBP17.68■□□□□ 0.42
RTN3-210ENST00000540798 SMC4Q9NTJ3 1288 aa17.68■□□□□ 0.42
RTN3-210ENST00000540798 DZIP1LQ8IYY4 767 aaKnown RBP17.68■□□□□ 0.42
RTN3-210ENST00000540798 LMOD3Q0VAK6 560 aa17.67■□□□□ 0.42
RTN3-210ENST00000540798 PMFBP1Q8TBY8 1022 aa17.67■□□□□ 0.42
RTN3-210ENST00000540798 TRIM27P14373 513 aa17.67■□□□□ 0.42
RTN3-210ENST00000540798 AEBP2Q6ZN18 517 aaPredicted RBP17.67■□□□□ 0.42
RTN3-210ENST00000540798 PCDHB15Q9Y5E8 787 aa17.67■□□□□ 0.42
RTN3-210ENST00000540798 ATF7IPQ6VMQ6 1270 aa17.66■□□□□ 0.42
RTN3-210ENST00000540798 KIF16BQ96L93 1317 aa17.66■□□□□ 0.42
RTN3-210ENST00000540798 GNAI1P63096 354 aa17.65■□□□□ 0.42
RTN3-210ENST00000540798 ARHGEF10O15013 1369 aa17.65■□□□□ 0.42
RTN3-210ENST00000540798 SBNO1A3KN83 1393 aa17.65■□□□□ 0.42
RTN3-210ENST00000540798 C8orf34Q49A92 452 aa17.65■□□□□ 0.42
RTN3-210ENST00000540798 FAM161AQ3B820 660 aa17.64■□□□□ 0.41
RTN3-210ENST00000540798 ANKLE2Q86XL3 938 aa17.64■□□□□ 0.41
RTN3-210ENST00000540798 NOB1Q9ULX3 412 aaKnown RBP17.64■□□□□ 0.41
RTN3-210ENST00000540798 NOP58Q9Y2X3 529 aaKnown RBP17.63■□□□□ 0.41
RTN3-210ENST00000540798 FLT4P35916 1363 aa17.63■□□□□ 0.41
RTN3-210ENST00000540798 CFAP44Q96MT7 982 aa17.63■□□□□ 0.41
RTN3-210ENST00000540798 THUMPD2Q9BTF0 503 aaKnown RBP17.63■□□□□ 0.41
RTN3-210ENST00000540798 FTSJ3Q8IY81 847 aaKnown RBP17.63■□□□□ 0.41
RTN3-210ENST00000540798 MAP3K19Q56UN5 1328 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 KIF24Q5T7B8 1368 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 VAMP4O75379 141 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 HSP90AB2PQ58FF8 381 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 AEBP1Q8IUX7 1158 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 NGDNQ8NEJ9 315 aaKnown RBP17.62■□□□□ 0.41
RTN3-210ENST00000540798 MBIPQ9NS73 344 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 KDRP35968 1356 aa17.62■□□□□ 0.41
RTN3-210ENST00000540798 NWD1Q149M9 1564 aa17.61■□□□□ 0.41
RTN3-210ENST00000540798 SULT6B1Q6IMI4 303 aa17.61■□□□□ 0.41
RTN3-210ENST00000540798 DDX19BQ9UMR2 479 aa17.61■□□□□ 0.41
RTN3-210ENST00000540798 IPO8O15397 1037 aaKnown RBP17.61■□□□□ 0.41
RTN3-210ENST00000540798 ADGRL3Q9HAR2 1447 aa17.6■□□□□ 0.41
RTN3-210ENST00000540798 ARHGAP45Q92619 1136 aa17.59■□□□□ 0.41
RTN3-210ENST00000540798 MRPL50Q8N5N7 158 aaKnown RBP17.59■□□□□ 0.41
RTN3-210ENST00000540798 RWDD1Q9H446 243 aaPredicted RBP17.59■□□□□ 0.41
RTN3-210ENST00000540798 RGS3P49796 1198 aa17.58■□□□□ 0.41
RTN3-210ENST00000540798 PAK3O75914 559 aaPredicted RBP17.58■□□□□ 0.4
RTN3-210ENST00000540798 LRRC37A3O60309 1634 aa17.58■□□□□ 0.4
RTN3-210ENST00000540798 FAM83GA6ND36 823 aa17.58■□□□□ 0.4
RTN3-210ENST00000540798 HDAC1Q13547 482 aaPredicted RBP17.58■□□□□ 0.4
RTN3-210ENST00000540798 TSPYL6Q8N831 410 aa17.58■□□□□ 0.4
RTN3-210ENST00000540798 LAS1LQ9Y4W2 734 aaKnown RBP17.58■□□□□ 0.4
RTN3-210ENST00000540798 NPHP4O75161 1426 aaPredicted RBP17.57■□□□□ 0.4
RTN3-210ENST00000540798 IGSF1Q8N6C5 1336 aa17.57■□□□□ 0.4
RTN3-210ENST00000540798 TMEM57Q8N5G2 664 aa17.57■□□□□ 0.4
RTN3-210ENST00000540798 PHRF1Q9P1Y6 1649 aaKnown RBP17.57■□□□□ 0.4
RTN3-210ENST00000540798 ZBTB40Q9NUA8 1239 aa17.56■□□□□ 0.4
RTN3-210ENST00000540798 LTN1O94822 1766 aa17.56■□□□□ 0.4
RTN3-210ENST00000540798 CRB1P82279 1406 aa17.56■□□□□ 0.4
RTN3-210ENST00000540798 KDM4FA0A1W2PPD8 638 aa17.56■□□□□ 0.4
RTN3-210ENST00000540798 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.55■□□□□ 0.4
RTN3-210ENST00000540798 ITPRIPQ8IWB1 547 aa17.55■□□□□ 0.4
RTN3-210ENST00000540798 NFAT5O94916 1531 aa17.55■□□□□ 0.4
RTN3-210ENST00000540798 CHL1O00533 1208 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 TWISTNBQ3B726 338 aaPredicted RBP17.54■□□□□ 0.4
RTN3-210ENST00000540798 C8orf58Q8NAV2 365 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 KIAA0232Q92628 1395 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 DCTN1Q14203 1278 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 ZBTB47Q9UFB7 747 aaPredicted RBP17.54■□□□□ 0.4
RTN3-210ENST00000540798 PDZRN3Q9UPQ7 1066 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 RTL1A6NKG5 1358 aa17.54■□□□□ 0.4
RTN3-210ENST00000540798 ABCC4O15439 1325 aa17.53■□□□□ 0.4
RTN3-210ENST00000540798 NPM2Q86SE8 214 aaKnown RBP17.53■□□□□ 0.4
RTN3-210ENST00000540798 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
RTN3-210ENST00000540798 NLRP6P59044 892 aa17.53■□□□□ 0.4
RTN3-210ENST00000540798 PHF8Q9UPP1 1060 aa17.52■□□□□ 0.4
RTN3-210ENST00000540798 EYA1Q99502 592 aa17.52■□□□□ 0.39
RTN3-210ENST00000540798 HOXC9P31274 260 aa17.51■□□□□ 0.39
RTN3-210ENST00000540798 SOX12O15370 315 aa17.5■□□□□ 0.39
RTN3-210ENST00000540798 AMPHP49418 695 aa17.5■□□□□ 0.39
RTN3-210ENST00000540798 SMC5Q8IY18 1101 aa17.5■□□□□ 0.39
RTN3-210ENST00000540798 MTHFSDQ2M296 383 aaKnown RBP17.49■□□□□ 0.39
RTN3-210ENST00000540798 DDRGK1Q96HY6 314 aa17.49■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms