RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, human

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-225	ENST00000540756	AEBP1	Q8IUX7	1158 aa		32.24	■■■□□ 2.75
TTC3-225	ENST00000540756	TRMT2A	Q8IZ69	625 aa	Known RBP	32.24	■■■□□ 2.75
TTC3-225	ENST00000540756	RCAN3	Q9UKA8	241 aa		32.23	■■■□□ 2.75
TTC3-225	ENST00000540756	NFAT5	O94916	1531 aa		32.22	■■■□□ 2.75
TTC3-225	ENST00000540756	LTN1	O94822	1766 aa		32.22	■■■□□ 2.75
TTC3-225	ENST00000540756	CCDC27	Q2M243	656 aa		32.21	■■■□□ 2.75
TTC3-225	ENST00000540756	HOXC9	P31274	260 aa		32.21	■■■□□ 2.75
TTC3-225	ENST00000540756	PNN	Q9H307	717 aa	Known RBP	32.21	■■■□□ 2.75
TTC3-225	ENST00000540756	TRIM35	Q9UPQ4	493 aa		32.21	■■■□□ 2.75
TTC3-225	ENST00000540756	RNF123	Q5XPI4	1314 aa		32.2	■■■□□ 2.74
TTC3-225	ENST00000540756	SULT6B1	Q6IMI4	303 aa		32.19	■■■□□ 2.74
TTC3-225	ENST00000540756	BRINP3	Q76B58	766 aa		32.19	■■■□□ 2.74
TTC3-225	ENST00000540756	RGPD1	P0DJD0	1748 aa		32.19	■■■□□ 2.74
TTC3-225	ENST00000540756	RIPK4	P57078	832 aa		32.19	■■■□□ 2.74
TTC3-225	ENST00000540756		E9PSI1	815 aa		32.18	■■■□□ 2.74
TTC3-225	ENST00000540756	SLAIN2	Q9P270	581 aa		32.18	■■■□□ 2.74
TTC3-225	ENST00000540756	ALS2	Q96Q42	1657 aa		32.18	■■■□□ 2.74
TTC3-225	ENST00000540756	GC	P02774	474 aa		32.16	■■■□□ 2.74
TTC3-225	ENST00000540756	ZBTB7C	A1YPR0	619 aa		32.16	■■■□□ 2.74
TTC3-225	ENST00000540756	NPHP3	Q7Z494	1330 aa		32.15	■■■□□ 2.74
TTC3-225	ENST00000540756	NCBP3	Q53F19	620 aa	Known RBP	32.14	■■■□□ 2.74
TTC3-225	ENST00000540756	WDR63	Q8IWG1	891 aa		32.14	■■■□□ 2.74
TTC3-225	ENST00000540756	KCNH5	Q8NCM2	988 aa		32.14	■■■□□ 2.74
TTC3-225	ENST00000540756	SLIT3	O75094	1523 aa		32.13	■■■□□ 2.73
TTC3-225	ENST00000540756	LTV1	Q96GA3	475 aa	Predicted RBP	32.13	■■■□□ 2.73
TTC3-225	ENST00000540756	PXDN	Q92626	1479 aa		32.13	■■■□□ 2.73
TTC3-225	ENST00000540756	EYA1	Q99502	592 aa		32.12	■■■□□ 2.73
TTC3-225	ENST00000540756	USP19	O94966	1318 aa		32.12	■■■□□ 2.73
TTC3-225	ENST00000540756	NEFM	P07197	916 aa		32.11	■■■□□ 2.73
TTC3-225	ENST00000540756	KIF24	Q5T7B8	1368 aa		32.11	■■■□□ 2.73
TTC3-225	ENST00000540756	NFE2L2	Q16236	605 aa		32.1	■■■□□ 2.73
TTC3-225	ENST00000540756	MED1	Q15648	1581 aa	Predicted RBP	32.1	■■■□□ 2.73
TTC3-225	ENST00000540756	IP6K1	Q92551	441 aa		32.09	■■■□□ 2.73
TTC3-225	ENST00000540756	DLG5	Q8TDM6	1919 aa		32.08	■■■□□ 2.73
TTC3-225	ENST00000540756	RRP1	P56182	461 aa	Known RBP	32.07	■■■□□ 2.72
TTC3-225	ENST00000540756	ARHGEF10	O15013	1369 aa		32.07	■■■□□ 2.72
TTC3-225	ENST00000540756	ARHGEF25	Q86VW2	580 aa		32.07	■■■□□ 2.72
TTC3-225	ENST00000540756	RTL1	A6NKG5	1358 aa		32.06	■■■□□ 2.72
TTC3-225	ENST00000540756	IGSF1	Q8N6C5	1336 aa		32.06	■■■□□ 2.72
TTC3-225	ENST00000540756	CABLES1	Q8TDN4	633 aa		32.06	■■■□□ 2.72
TTC3-225	ENST00000540756	TNS3	Q68CZ2	1445 aa		32.05	■■■□□ 2.72
TTC3-225	ENST00000540756	THUMPD2	Q9BTF0	503 aa	Known RBP	32.04	■■■□□ 2.72
TTC3-225	ENST00000540756	SPATA31A3	Q5VYP0	1347 aa		32.04	■■■□□ 2.72
TTC3-225	ENST00000540756	PLIN1	O60240	522 aa		32.04	■■■□□ 2.72
TTC3-225	ENST00000540756	ZC3H6	P61129	1189 aa	Known RBP	32.02	■■■□□ 2.72
TTC3-225	ENST00000540756	TSR2	Q969E8	191 aa	Known RBP	32.02	■■■□□ 2.72
TTC3-225	ENST00000540756	PHRF1	Q9P1Y6	1649 aa	Known RBP	32.02	■■■□□ 2.72
TTC3-225	ENST00000540756	KDR	P35968	1356 aa		32.01	■■■□□ 2.72
TTC3-225	ENST00000540756	USHBP1	Q8N6Y0	703 aa		32	■■■□□ 2.71
TTC3-225	ENST00000540756	FAM83G	A6ND36	823 aa		32	■■■□□ 2.71
TTC3-225	ENST00000540756	AXIN2	Q9Y2T1	843 aa		32	■■■□□ 2.71
TTC3-225	ENST00000540756	RGPD2	P0DJD1	1756 aa		31.99	■■■□□ 2.71
TTC3-225	ENST00000540756	LTBP4	Q8N2S1	1624 aa		31.99	■■■□□ 2.71
TTC3-225	ENST00000540756	DCTN1	Q14203	1278 aa		31.97	■■■□□ 2.71
TTC3-225	ENST00000540756	MYH16	Q9H6N6	1097 aa		31.97	■■■□□ 2.71
TTC3-225	ENST00000540756	SOS2	Q07890	1332 aa	Predicted RBP	31.97	■■■□□ 2.71
TTC3-225	ENST00000540756	FANCI	Q9NVI1	1328 aa		31.97	■■■□□ 2.71
TTC3-225	ENST00000540756	RGPD5	Q99666	1765 aa		31.97	■■■□□ 2.71
TTC3-225	ENST00000540756	NBPF6	Q5VWK0	638 aa		31.96	■■■□□ 2.71
TTC3-225	ENST00000540756	NBPF4	Q96M43	638 aa		31.96	■■■□□ 2.71
TTC3-225	ENST00000540756	LRRC59	Q96AG4	307 aa	Known RBP	31.95	■■■□□ 2.71
TTC3-225	ENST00000540756	BCAR3	O75815	825 aa		31.94	■■■□□ 2.7
TTC3-225	ENST00000540756	CRYBG1	Q9Y4K1	1723 aa		31.94	■■■□□ 2.7
TTC3-225	ENST00000540756	MTHFSD	Q2M296	383 aa	Known RBP	31.93	■■■□□ 2.7
TTC3-225	ENST00000540756	IL16	Q14005	1332 aa		31.93	■■■□□ 2.7
TTC3-225	ENST00000540756	LAS1L	Q9Y4W2	734 aa	Known RBP	31.92	■■■□□ 2.7
TTC3-225	ENST00000540756	ERICH6B	Q5W0A0	696 aa		31.9	■■■□□ 2.7
TTC3-225	ENST00000540756	ANKRD24	Q8TF21	1146 aa		31.9	■■■□□ 2.7
TTC3-225	ENST00000540756	EXOSC9	Q06265	439 aa	Known RBP	31.88	■■■□□ 2.69
TTC3-225	ENST00000540756	C20orf194	Q5TEA3	1177 aa		31.88	■■■□□ 2.69
TTC3-225	ENST00000540756	NHSL1	Q5SYE7	1610 aa		31.88	■■■□□ 2.69
TTC3-225	ENST00000540756	MCM10	Q7L590	875 aa		31.88	■■■□□ 2.69
TTC3-225	ENST00000540756	CHRNA2	Q15822	529 aa		31.87	■■■□□ 2.69
TTC3-225	ENST00000540756	LMOD3	Q0VAK6	560 aa		31.87	■■■□□ 2.69
TTC3-225	ENST00000540756	COL18A1	P39060	1754 aa		31.85	■■■□□ 2.69
TTC3-225	ENST00000540756	PPP4R2	Q9NY27	417 aa		31.85	■■■□□ 2.69
TTC3-225	ENST00000540756	EXOC6	Q8TAG9	804 aa		31.84	■■■□□ 2.69
TTC3-225	ENST00000540756	KIAA0232	Q92628	1395 aa		31.84	■■■□□ 2.69
TTC3-225	ENST00000540756	RARS	P54136	660 aa	Known RBP	31.83	■■■□□ 2.69
TTC3-225	ENST00000540756	BCL2L13	Q9BXK5	485 aa		31.82	■■■□□ 2.68
TTC3-225	ENST00000540756	ROBO1	Q9Y6N7	1651 aa		31.82	■■■□□ 2.68
TTC3-225	ENST00000540756	ZNF853	P0CG23	659 aa		31.82	■■■□□ 2.68
TTC3-225	ENST00000540756	ERBB3	P21860	1342 aa		31.81	■■■□□ 2.68
TTC3-225	ENST00000540756	B4GALNT3	Q6L9W6	998 aa		31.81	■■■□□ 2.68
TTC3-225	ENST00000540756	IFT57	Q9NWB7	429 aa		31.81	■■■□□ 2.68
TTC3-225	ENST00000540756	MBIP	Q9NS73	344 aa		31.8	■■■□□ 2.68
TTC3-225	ENST00000540756	CALD1	Q05682	793 aa	Known RBP	31.8	■■■□□ 2.68
TTC3-225	ENST00000540756	GAS2L2	Q8NHY3	880 aa		31.79	■■■□□ 2.68
TTC3-225	ENST00000540756	GNAI1	P63096	354 aa		31.78	■■■□□ 2.68
TTC3-225	ENST00000540756	CFAP44	Q96MT7	982 aa		31.78	■■■□□ 2.68
TTC3-225	ENST00000540756	CRBN	Q96SW2	442 aa		31.77	■■■□□ 2.68
TTC3-225	ENST00000540756	CPD	O75976	1380 aa		31.76	■■■□□ 2.67
TTC3-225	ENST00000540756	NCAPD2	Q15021	1401 aa		31.75	■■■□□ 2.67
TTC3-225	ENST00000540756	ABCA3	Q99758	1704 aa		31.75	■■■□□ 2.67
TTC3-225	ENST00000540756	CAMTA1	Q9Y6Y1	1673 aa		31.74	■■■□□ 2.67
TTC3-225	ENST00000540756	CRB1	P82279	1406 aa		31.73	■■■□□ 2.67
TTC3-225	ENST00000540756	TSPYL6	Q8N831	410 aa		31.73	■■■□□ 2.67
TTC3-225	ENST00000540756	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	31.73	■■■□□ 2.67
TTC3-225	ENST00000540756	RTF1	Q92541	710 aa	Known RBP	31.73	■■■□□ 2.67
TTC3-225	ENST00000540756	HAP1	P54257	671 aa	Predicted RBP	31.72	■■■□□ 2.67

Retrieved 100 of 20,778 RNA–protein pairs in 19 ms