RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 HIP1O00291 1037 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 MPRIPQ6WCQ1 1025 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 CNTROBQ8N137 903 aa17.28■□□□□ 0.36
COLCA1-204ENST00000540738 TTC39AQ5SRH9 613 aa17.27■□□□□ 0.36
COLCA1-204ENST00000540738 SART3Q15020 963 aaKnown RBP17.27■□□□□ 0.36
COLCA1-204ENST00000540738 FSD1Q9BTV5 496 aa17.27■□□□□ 0.36
COLCA1-204ENST00000540738 CEP170Q5SW79 1584 aa17.27■□□□□ 0.35
COLCA1-204ENST00000540738 IFNL2Q8IZJ0 200 aa17.27■□□□□ 0.35
COLCA1-204ENST00000540738 CCDC43Q96MW1 224 aaKnown RBP17.26■□□□□ 0.35
COLCA1-204ENST00000540738 BCL11BQ9C0K0 894 aaPredicted RBP17.26■□□□□ 0.35
COLCA1-204ENST00000540738 FAM161AQ3B820 660 aa17.25■□□□□ 0.35
COLCA1-204ENST00000540738 SAMD1Q6SPF0 538 aaPredicted RBP17.25■□□□□ 0.35
COLCA1-204ENST00000540738 AK7Q96M32 723 aa17.25■□□□□ 0.35
COLCA1-204ENST00000540738 TAF7Q15545 349 aaPredicted RBP17.25■□□□□ 0.35
COLCA1-204ENST00000540738 TBX22Q9Y458 520 aa17.25■□□□□ 0.35
COLCA1-204ENST00000540738 IKQ13123 557 aaPredicted RBP17.25■□□□□ 0.35
COLCA1-204ENST00000540738 SLKQ9H2G2 1235 aaPredicted RBP17.24■□□□□ 0.35
COLCA1-204ENST00000540738 CCDC47Q96A33 483 aaKnown RBP17.24■□□□□ 0.35
COLCA1-204ENST00000540738 C8orf37Q96NL8 207 aa17.24■□□□□ 0.35
COLCA1-204ENST00000540738 SAFBQ15424 915 aaKnown RBP eCLIP17.23■□□□□ 0.35
COLCA1-204ENST00000540738 NEO1Q92859 1461 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 CEP126Q9P2H0 1117 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 ANKRD24Q8TF21 1146 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 FMNL2Q96PY5 1086 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 PBRM1Q86U86 1689 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 ZSCAN25Q6NSZ9 544 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 TMOD2Q9NZR1 351 aa17.23■□□□□ 0.35
COLCA1-204ENST00000540738 TSR2Q969E8 191 aaKnown RBP17.22■□□□□ 0.35
COLCA1-204ENST00000540738 A0A087WZG4 1122 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 DNAJC2Q99543 621 aaKnown RBP17.22■□□□□ 0.35
COLCA1-204ENST00000540738 MCTP1Q6DN14 999 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 PANK1Q8TE04 598 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 RBM5P52756 815 aaKnown RBP eCLIP17.22■□□□□ 0.35
COLCA1-204ENST00000540738 LARP1Q6PKG0 1096 aaKnown RBP17.22■□□□□ 0.35
COLCA1-204ENST00000540738 USHBP1Q8N6Y0 703 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 NACAP1Q9BZK3 213 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 LNPKQ9C0E8 428 aa17.22■□□□□ 0.35
COLCA1-204ENST00000540738 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
COLCA1-204ENST00000540738 XBP1P17861 261 aa17.21■□□□□ 0.35
COLCA1-204ENST00000540738 ABCC11Q96J66 1382 aa17.2■□□□□ 0.34
COLCA1-204ENST00000540738 CHRNA2Q15822 529 aa17.2■□□□□ 0.34
COLCA1-204ENST00000540738 BRMS1Q9HCU9 246 aa17.2■□□□□ 0.34
COLCA1-204ENST00000540738 EMILIN1Q9Y6C2 1016 aa17.2■□□□□ 0.34
COLCA1-204ENST00000540738 SMARCC1Q92922 1105 aaPredicted RBP17.2■□□□□ 0.34
COLCA1-204ENST00000540738 PSMA5P28066 241 aa17.19■□□□□ 0.34
COLCA1-204ENST00000540738 RPRD2Q5VT52 1461 aaKnown RBP17.19■□□□□ 0.34
COLCA1-204ENST00000540738 PHF14O94880 888 aa17.19■□□□□ 0.34
COLCA1-204ENST00000540738 PDE3AQ14432 1141 aa17.19■□□□□ 0.34
COLCA1-204ENST00000540738 SHANK2Q9UPX8 1470 aa17.19■□□□□ 0.34
COLCA1-204ENST00000540738 GCC1Q96CN9 775 aa17.19■□□□□ 0.34
COLCA1-204ENST00000540738 NOB1Q9ULX3 412 aaKnown RBP17.19■□□□□ 0.34
COLCA1-204ENST00000540738 WDHD1O75717 1129 aaPredicted RBP17.18■□□□□ 0.34
COLCA1-204ENST00000540738 KCNA6P17658 529 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 RPGRQ92834 1020 aaKnown RBP17.17■□□□□ 0.34
COLCA1-204ENST00000540738 IFT57Q9NWB7 429 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 DDB1Q16531 1140 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 ANKRD36BQ8N2N9 1353 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 DISP1Q96F81 1524 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 CDC45O75419 566 aa17.17■□□□□ 0.34
COLCA1-204ENST00000540738 TPD52L1Q16890 204 aaPredicted RBP17.17■□□□□ 0.34
COLCA1-204ENST00000540738 TPM2P07951 284 aa17.16■□□□□ 0.34
COLCA1-204ENST00000540738 DUSP27Q5VZP5 1158 aa17.16■□□□□ 0.34
COLCA1-204ENST00000540738 NBPF14Q5TI25 921 aa17.16■□□□□ 0.34
COLCA1-204ENST00000540738 ZCRB1Q8TBF4 217 aaKnown RBP17.16■□□□□ 0.34
COLCA1-204ENST00000540738 CEP89Q96ST8 783 aa17.16■□□□□ 0.34
COLCA1-204ENST00000540738 FOXD4L1Q9NU39 408 aa17.16■□□□□ 0.34
COLCA1-204ENST00000540738 MCM10Q7L590 875 aa17.15■□□□□ 0.34
COLCA1-204ENST00000540738 CREBRFQ8IUR6 639 aa17.15■□□□□ 0.34
COLCA1-204ENST00000540738 ABCA5Q8WWZ7 1642 aa17.15■□□□□ 0.34
COLCA1-204ENST00000540738 HYPKQ9NX55 129 aa17.15■□□□□ 0.34
COLCA1-204ENST00000540738 ATF7IPQ6VMQ6 1270 aa17.15■□□□□ 0.34
COLCA1-204ENST00000540738 RFC4P35249 363 aa17.14■□□□□ 0.33
COLCA1-204ENST00000540738 SIL1Q9H173 461 aa17.14■□□□□ 0.33
COLCA1-204ENST00000540738 HOOK1Q9UJC3 728 aaKnown RBP17.14■□□□□ 0.33
COLCA1-204ENST00000540738 TRPM2O94759 1503 aa17.14■□□□□ 0.33
COLCA1-204ENST00000540738 LRRCC1Q9C099 1032 aa17.13■□□□□ 0.33
COLCA1-204ENST00000540738 AKAP2Q9Y2D5 859 aa17.13■□□□□ 0.33
COLCA1-204ENST00000540738 PPIP5K1Q6PFW1 1433 aa17.13■□□□□ 0.33
COLCA1-204ENST00000540738 IFIT1P09914 478 aaKnown RBP17.13■□□□□ 0.33
COLCA1-204ENST00000540738 CAVIN4Q5BKX8 364 aa17.13■□□□□ 0.33
COLCA1-204ENST00000540738 ZSCAN29Q8IWY8 852 aaPredicted RBP17.13■□□□□ 0.33
COLCA1-204ENST00000540738 DBF4Q9UBU7 674 aaPredicted RBP17.13■□□□□ 0.33
COLCA1-204ENST00000540738 SRGAP3O43295 1099 aa17.13■□□□□ 0.33
COLCA1-204ENST00000540738 TRMT112Q9UI30 125 aaKnown RBP17.13■□□□□ 0.33
COLCA1-204ENST00000540738 PUS7Q96PZ0 661 aaKnown RBP17.12■□□□□ 0.33
COLCA1-204ENST00000540738 ZFYVE16Q7Z3T8 1539 aa17.12■□□□□ 0.33
COLCA1-204ENST00000540738 CDCA7Q9BWT1 371 aaPredicted RBP17.12■□□□□ 0.33
COLCA1-204ENST00000540738 ATP7AQ04656 1500 aa17.11■□□□□ 0.33
COLCA1-204ENST00000540738 METTL24Q5JXM2 366 aa17.11■□□□□ 0.33
COLCA1-204ENST00000540738 CDCA7LQ96GN5 454 aa17.11■□□□□ 0.33
COLCA1-204ENST00000540738 RAI14Q9P0K7 980 aa17.11■□□□□ 0.33
COLCA1-204ENST00000540738 PPP1R42Q7Z4L9 355 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 ANKIB1Q9P2G1 1089 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 SMC3Q9UQE7 1217 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 MTMR7Q9Y216 660 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 CFAP74Q9C0B2 1584 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 IL2RBP14784 551 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 LRP2BPQ9P2M1 347 aa17.1■□□□□ 0.33
COLCA1-204ENST00000540738 TCOF1Q13428 1488 aaKnown RBP17.1■□□□□ 0.33
COLCA1-204ENST00000540738 ATP2B2Q01814 1243 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms