RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ARHGEF25Q86VW2 580 aa14.33□□□□□ -0.12
VPS33A-204ENST00000540669 KCNH5Q8NCM2 988 aa14.33□□□□□ -0.12
VPS33A-204ENST00000540669 FLT4P35916 1363 aa14.33□□□□□ -0.12
VPS33A-204ENST00000540669 CCER2I3L3R5 266 aa14.32□□□□□ -0.12
VPS33A-204ENST00000540669 MEX3CQ5U5Q3 659 aaKnown RBP14.32□□□□□ -0.12
VPS33A-204ENST00000540669 SPATA31A6Q5VVP1 1343 aa14.32□□□□□ -0.12
VPS33A-204ENST00000540669 SLIT2O94813 1529 aa14.31□□□□□ -0.12
VPS33A-204ENST00000540669 NUTM2GQ5VZR2 741 aa14.31□□□□□ -0.12
VPS33A-204ENST00000540669 MIER1Q8N108 512 aa14.31□□□□□ -0.12
VPS33A-204ENST00000540669 EMILIN1Q9Y6C2 1016 aa14.31□□□□□ -0.12
VPS33A-204ENST00000540669 WNK3Q9BYP7 1800 aa14.31□□□□□ -0.12
VPS33A-204ENST00000540669 RGPD2P0DJD1 1756 aa14.3□□□□□ -0.12
VPS33A-204ENST00000540669 KIAA0232Q92628 1395 aa14.3□□□□□ -0.12
VPS33A-204ENST00000540669 COL5A2P05997 1499 aaPredicted RBP14.3□□□□□ -0.12
VPS33A-204ENST00000540669 FBLN1P23142 703 aa14.29□□□□□ -0.12
VPS33A-204ENST00000540669 CCDC184Q52MB2 194 aa14.29□□□□□ -0.12
VPS33A-204ENST00000540669 RRS1Q15050 365 aaKnown RBP14.28□□□□□ -0.12
VPS33A-204ENST00000540669 CABLES1Q8TDN4 633 aa14.28□□□□□ -0.12
VPS33A-204ENST00000540669 DCAF8L1A6NGE4 600 aa14.27□□□□□ -0.13
VPS33A-204ENST00000540669 HOXC9P31274 260 aa14.27□□□□□ -0.13
VPS33A-204ENST00000540669 MTHFSP49914 203 aa14.27□□□□□ -0.13
VPS33A-204ENST00000540669 KDRP35968 1356 aa14.26□□□□□ -0.13
VPS33A-204ENST00000540669 IP6K1Q92551 441 aa14.26□□□□□ -0.13
VPS33A-204ENST00000540669 PLEKHG2Q9H7P9 1386 aa14.25□□□□□ -0.13
VPS33A-204ENST00000540669 ERBB3P21860 1342 aa14.25□□□□□ -0.13
VPS33A-204ENST00000540669 HAP1P54257 671 aaPredicted RBP14.25□□□□□ -0.13
VPS33A-204ENST00000540669 TNNT2P45379 298 aaPredicted RBP14.24□□□□□ -0.13
VPS33A-204ENST00000540669 LMOD2Q6P5Q4 547 aa14.24□□□□□ -0.13
VPS33A-204ENST00000540669 PKD1L3Q7Z443 1732 aa14.24□□□□□ -0.13
VPS33A-204ENST00000540669 IGSF1Q8N6C5 1336 aa14.23□□□□□ -0.13
VPS33A-204ENST00000540669 IL13P35225 146 aa14.23□□□□□ -0.13
VPS33A-204ENST00000540669 PNISRQ8TF01 805 aaKnown RBP14.23□□□□□ -0.13
VPS33A-204ENST00000540669 AXIN2Q9Y2T1 843 aa14.23□□□□□ -0.13
VPS33A-204ENST00000540669 SHANK3Q9BYB0 1731 aa14.22□□□□□ -0.13
VPS33A-204ENST00000540669 NUTM2BA6NNL0 878 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-204ENST00000540669 NUTM2EB1AL46 878 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-204ENST00000540669 HSP90AB2PQ58FF8 381 aa14.22□□□□□ -0.13
VPS33A-204ENST00000540669 NUTM2AQ8IVF1 878 aaPredicted RBP14.22□□□□□ -0.13
VPS33A-204ENST00000540669 BCL9LQ86UU0 1499 aa14.22□□□□□ -0.13
VPS33A-204ENST00000540669 EIF4A2Q14240 407 aaKnown RBP14.21□□□□□ -0.13
VPS33A-204ENST00000540669 PARP4Q9UKK3 1724 aaKnown RBP14.21□□□□□ -0.14
VPS33A-204ENST00000540669 ZC3H6P61129 1189 aaKnown RBP14.2□□□□□ -0.14
VPS33A-204ENST00000540669 PRDM11Q9NQV5 511 aa14.2□□□□□ -0.14
VPS33A-204ENST00000540669 DISP2A7MBM2 1401 aa14.2□□□□□ -0.14
VPS33A-204ENST00000540669 ADAMTS7Q9UKP4 1686 aa14.2□□□□□ -0.14
VPS33A-204ENST00000540669 THSD7AQ9UPZ6 1657 aa14.2□□□□□ -0.14
VPS33A-204ENST00000540669 FAM83GA6ND36 823 aa14.19□□□□□ -0.14
VPS33A-204ENST00000540669 SOX12O15370 315 aa14.19□□□□□ -0.14
VPS33A-204ENST00000540669 CNGB1Q14028 1251 aaPredicted RBP14.19□□□□□ -0.14
VPS33A-204ENST00000540669 FNBP4Q8N3X1 1017 aaPredicted RBP14.19□□□□□ -0.14
VPS33A-204ENST00000540669 MRS2Q9HD23 443 aa14.19□□□□□ -0.14
VPS33A-204ENST00000540669 WDR17Q8IZU2 1322 aa14.18□□□□□ -0.14
VPS33A-204ENST00000540669 GLI3P10071 1580 aa14.18□□□□□ -0.14
VPS33A-204ENST00000540669 ZNF772Q68DY9 489 aaPredicted RBP14.18□□□□□ -0.14
VPS33A-204ENST00000540669 CFAP53Q96M91 514 aa14.18□□□□□ -0.14
VPS33A-204ENST00000540669 CRB1P82279 1406 aa14.17□□□□□ -0.14
VPS33A-204ENST00000540669 DIAPH1O60610 1272 aaKnown RBP14.17□□□□□ -0.14
VPS33A-204ENST00000540669 AMPHP49418 695 aa14.17□□□□□ -0.14
VPS33A-204ENST00000540669 CHRNA2Q15822 529 aa14.17□□□□□ -0.14
VPS33A-204ENST00000540669 ATRNO75882 1429 aa14.16□□□□□ -0.14
VPS33A-204ENST00000540669 LRRC37A3O60309 1634 aa14.16□□□□□ -0.14
VPS33A-204ENST00000540669 MEGF6O75095 1541 aa14.15□□□□□ -0.14
VPS33A-204ENST00000540669 ANKRD24Q8TF21 1146 aa14.15□□□□□ -0.14
VPS33A-204ENST00000540669 DLG5Q8TDM6 1919 aa14.15□□□□□ -0.14
VPS33A-204ENST00000540669 C8orf37Q96NL8 207 aa14.14□□□□□ -0.15
VPS33A-204ENST00000540669 EYA1Q99502 592 aa14.14□□□□□ -0.15
VPS33A-204ENST00000540669 RSPH6AQ9H0K4 717 aa14.14□□□□□ -0.15
VPS33A-204ENST00000540669 OVOS2A0A0G2JMS6 1433 aa14.14□□□□□ -0.15
VPS33A-204ENST00000540669 ADAMTS2O95450 1211 aa14.13□□□□□ -0.15
VPS33A-204ENST00000540669 NBPF6Q5VWK0 638 aa14.13□□□□□ -0.15
VPS33A-204ENST00000540669 NGLY1Q96IV0 654 aa14.13□□□□□ -0.15
VPS33A-204ENST00000540669 NBPF4Q96M43 638 aa14.13□□□□□ -0.15
VPS33A-204ENST00000540669 PPM1GO15355 546 aaPredicted RBP14.12□□□□□ -0.15
VPS33A-204ENST00000540669 PLEKHF1Q96S99 279 aa14.12□□□□□ -0.15
VPS33A-204ENST00000540669 BTG4Q9NY30 223 aa14.12□□□□□ -0.15
VPS33A-204ENST00000540669 VIRMAQ69YN4 1812 aaKnown RBP14.12□□□□□ -0.15
VPS33A-204ENST00000540669 AEBP1Q8IUX7 1158 aa14.11□□□□□ -0.15
VPS33A-204ENST00000540669 CARD10Q9BWT7 1032 aa14.11□□□□□ -0.15
VPS33A-204ENST00000540669 ADAMTS8Q9UP79 889 aa14.11□□□□□ -0.15
VPS33A-204ENST00000540669 PLEKHG5O94827 1062 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 FCHSD2O94868 740 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 NUDCQ9Y266 331 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 AFF2P51816 1311 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 SPATA31A1Q5TZJ5 1347 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 SPATA31A5Q5VU36 1347 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 SPATA31A7Q8IWB4 1347 aa14.1□□□□□ -0.15
VPS33A-204ENST00000540669 TNS2Q63HR2 1409 aa14.09□□□□□ -0.15
VPS33A-204ENST00000540669 VPS72Q15906 364 aa14.09□□□□□ -0.15
VPS33A-204ENST00000540669 LARP1Q6PKG0 1096 aaKnown RBP14.09□□□□□ -0.15
VPS33A-204ENST00000540669 UNC5CLQ8IV45 518 aa14.09□□□□□ -0.15
VPS33A-204ENST00000540669 FOXD4L1Q9NU39 408 aa14.09□□□□□ -0.15
VPS33A-204ENST00000540669 SIPA1L3O60292 1781 aaPredicted RBP14.09□□□□□ -0.15
VPS33A-204ENST00000540669 TOGARAM1Q9Y4F4 1720 aa14.08□□□□□ -0.16
VPS33A-204ENST00000540669 MRC1P22897 1456 aa14.07□□□□□ -0.16
VPS33A-204ENST00000540669 SCN11AQ9UI33 1791 aa14.07□□□□□ -0.16
VPS33A-204ENST00000540669 ZBTB22O15209 634 aa14.07□□□□□ -0.16
VPS33A-204ENST00000540669 SLC4A2P04920 1241 aa14.07□□□□□ -0.16
VPS33A-204ENST00000540669 WDR43Q15061 677 aaKnown RBP eCLIP14.07□□□□□ -0.16
VPS33A-204ENST00000540669 USP21Q9UK80 565 aa14.07□□□□□ -0.16
VPS33A-204ENST00000540669 ZBTB7CA1YPR0 619 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms