RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FOXD4L1Q9NU39 408 aa21.39■■□□□ 1.02
USP28-208ENST00000540438 TNRQ92752 1358 aa21.39■■□□□ 1.02
USP28-208ENST00000540438 NINLQ9Y2I6 1382 aa21.39■■□□□ 1.02
USP28-208ENST00000540438 PNPLA6Q8IY17 1366 aa21.38■■□□□ 1.01
USP28-208ENST00000540438 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.38■■□□□ 1.01
USP28-208ENST00000540438 MAP2P11137 1827 aaKnown RBP21.38■■□□□ 1.01
USP28-208ENST00000540438 ZNF428Q96B54 188 aa21.37■■□□□ 1.01
USP28-208ENST00000540438 IPO8O15397 1037 aaKnown RBP21.37■■□□□ 1.01
USP28-208ENST00000540438 UPF2Q9HAU5 1272 aaKnown RBP21.37■■□□□ 1.01
USP28-208ENST00000540438 TTC21BQ7Z4L5 1316 aa21.36■■□□□ 1.01
USP28-208ENST00000540438 MRPL50Q8N5N7 158 aaKnown RBP21.36■■□□□ 1.01
USP28-208ENST00000540438 PNNQ9H307 717 aaKnown RBP21.36■■□□□ 1.01
USP28-208ENST00000540438 USHBP1Q8N6Y0 703 aa21.36■■□□□ 1.01
USP28-208ENST00000540438 SLC4A10Q6U841 1118 aa21.35■■□□□ 1.01
USP28-208ENST00000540438 C16orf71Q8IYS4 520 aaPredicted RBP21.34■■□□□ 1.01
USP28-208ENST00000540438 TBC1D2Q9BYX2 928 aa21.34■■□□□ 1.01
USP28-208ENST00000540438 GNAI1P63096 354 aa21.34■■□□□ 1.01
USP28-208ENST00000540438 USP32Q8NFA0 1604 aa21.33■■□□□ 1.01
USP28-208ENST00000540438 KIF16BQ96L93 1317 aa21.33■■□□□ 1.01
USP28-208ENST00000540438 F6X3S4 739 aa21.33■■□□□ 1.01
USP28-208ENST00000540438 SIRT2Q8IXJ6 389 aa21.33■■□□□ 1
USP28-208ENST00000540438 FAM135BQ49AJ0 1406 aa21.33■■□□□ 1
USP28-208ENST00000540438 TMEM2Q9UHN6 1383 aa21.32■■□□□ 1
USP28-208ENST00000540438 XPCQ01831 940 aaPredicted RBP21.32■■□□□ 1
USP28-208ENST00000540438 BRPF3Q9ULD4 1205 aa21.32■■□□□ 1
USP28-208ENST00000540438 ZBTB7BO15156 539 aaPredicted RBP21.32■■□□□ 1
USP28-208ENST00000540438 HDGFP51858 240 aaKnown RBP21.31■■□□□ 1
USP28-208ENST00000540438 ADGRB2O60241 1585 aa21.31■■□□□ 1
USP28-208ENST00000540438 SMARCA5O60264 1052 aaPredicted RBP21.31■■□□□ 1
USP28-208ENST00000540438 AMPHP49418 695 aa21.31■■□□□ 1
USP28-208ENST00000540438 NLRP6P59044 892 aa21.31■■□□□ 1
USP28-208ENST00000540438 C22orf23Q9BZE7 217 aa21.31■■□□□ 1
USP28-208ENST00000540438 EDC4Q6P2E9 1401 aaKnown RBP21.3■■□□□ 1
USP28-208ENST00000540438 CPSF1Q10570 1443 aaKnown RBP21.3■■□□□ 1
USP28-208ENST00000540438 TBC1D32Q96NH3 1257 aa21.3■■□□□ 1
USP28-208ENST00000540438 EID1Q9Y6B2 187 aa21.3■■□□□ 1
USP28-208ENST00000540438 CFAP44Q96MT7 982 aa21.29■■□□□ 1
USP28-208ENST00000540438 GZF1Q9H116 711 aaPredicted RBP21.29■■□□□ 1
USP28-208ENST00000540438 CHD1LQ86WJ1 897 aa21.29■■□□□ 1
USP28-208ENST00000540438 OTUD7AQ8TE49 926 aaPredicted RBP21.29■■□□□ 1
USP28-208ENST00000540438 IL16Q14005 1332 aa21.29■■□□□ 1
USP28-208ENST00000540438 MAP3K19Q56UN5 1328 aa21.28■■□□□ 1
USP28-208ENST00000540438 LMOD2Q6P5Q4 547 aa21.28■■□□□ 1
USP28-208ENST00000540438 G2E3Q7L622 706 aa21.28■■□□□ 1
USP28-208ENST00000540438 RBM42Q9BTD8 480 aaKnown RBP21.28■■□□□ 1
USP28-208ENST00000540438 KCNA6P17658 529 aa21.27■■□□□ 1
USP28-208ENST00000540438 IFT57Q9NWB7 429 aa21.27■■□□□ 1
USP28-208ENST00000540438 HDAC1Q13547 482 aaPredicted RBP21.27■■□□□ 1
USP28-208ENST00000540438 PPP6R1Q9UPN7 881 aa21.27■■□□□ 1
USP28-208ENST00000540438 MTHFSDQ2M296 383 aaKnown RBP21.26■□□□□ 0.99
USP28-208ENST00000540438 SMC5Q8IY18 1101 aa21.26■□□□□ 0.99
USP28-208ENST00000540438 SLC4A2P04920 1241 aa21.26■□□□□ 0.99
USP28-208ENST00000540438 CT47B1P0C2W7 299 aaPredicted RBP21.26■□□□□ 0.99
USP28-208ENST00000540438 GSE1Q14687 1217 aa21.26■□□□□ 0.99
USP28-208ENST00000540438 BECN1Q14457 450 aa21.25■□□□□ 0.99
USP28-208ENST00000540438 ALDH1L2Q3SY69 923 aa21.25■□□□□ 0.99
USP28-208ENST00000540438 ZNF692Q9BU19 519 aaPredicted RBP21.25■□□□□ 0.99
USP28-208ENST00000540438 SPATA31D1Q6ZQQ2 1576 aa21.25■□□□□ 0.99
USP28-208ENST00000540438 TSHZ3Q63HK5 1081 aa21.25■□□□□ 0.99
USP28-208ENST00000540438 PTPRUQ92729 1446 aa21.24■□□□□ 0.99
USP28-208ENST00000540438 MED14O60244 1454 aa21.24■□□□□ 0.99
USP28-208ENST00000540438 ZNF853P0CG23 659 aa21.24■□□□□ 0.99
USP28-208ENST00000540438 NRXN3Q9Y4C0 1643 aa21.24■□□□□ 0.99
USP28-208ENST00000540438 ATP7BP35670 1465 aa21.24■□□□□ 0.99
USP28-208ENST00000540438 NUCB1Q02818 461 aa21.23■□□□□ 0.99
USP28-208ENST00000540438 ADAMTS13Q76LX8 1427 aa21.23■□□□□ 0.99
USP28-208ENST00000540438 MEIS3Q99687 375 aa21.23■□□□□ 0.99
USP28-208ENST00000540438 KIF20BQ96Q89 1820 aa21.22■□□□□ 0.99
USP28-208ENST00000540438 EYA1Q99502 592 aa21.22■□□□□ 0.99
USP28-208ENST00000540438 ABTB2Q8N961 1025 aa21.22■□□□□ 0.99
USP28-208ENST00000540438 TSPYL4Q9UJ04 414 aa21.22■□□□□ 0.99
USP28-208ENST00000540438 SETD1BQ9UPS6 1966 aaKnown RBP21.21■□□□□ 0.99
USP28-208ENST00000540438 RTF1Q92541 710 aaKnown RBP21.2■□□□□ 0.98
USP28-208ENST00000540438 USP35Q9P2H5 1018 aa21.19■□□□□ 0.98
USP28-208ENST00000540438 CALD1Q05682 793 aaKnown RBP21.19■□□□□ 0.98
USP28-208ENST00000540438 AGLP35573 1532 aa21.18■□□□□ 0.98
USP28-208ENST00000540438 CD2BP2O95400 341 aaKnown RBP21.18■□□□□ 0.98
USP28-208ENST00000540438 DLC1Q96QB1 1528 aa21.17■□□□□ 0.98
USP28-208ENST00000540438 LMOD3Q0VAK6 560 aa21.16■□□□□ 0.98
USP28-208ENST00000540438 ANXA1P04083 346 aa21.15■□□□□ 0.98
USP28-208ENST00000540438 AAMPQ13685 434 aa21.15■□□□□ 0.98
USP28-208ENST00000540438 TBC1D9Q6ZT07 1266 aa21.15■□□□□ 0.98
USP28-208ENST00000540438 SETD1AO15047 1707 aaKnown RBP21.15■□□□□ 0.98
USP28-208ENST00000540438 EIF2S2P20042 333 aaKnown RBP21.14■□□□□ 0.98
USP28-208ENST00000540438 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.14■□□□□ 0.97
USP28-208ENST00000540438 PLEKHG3A1L390 1219 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 CHL1O00533 1208 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 EXOC6BQ9Y2D4 811 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 ANKRD26Q9UPS8 1709 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 USP6P35125 1406 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 CDK12Q9NYV4 1490 aaPredicted RBP21.13■□□□□ 0.97
USP28-208ENST00000540438 ABCC4O15439 1325 aa21.13■□□□□ 0.97
USP28-208ENST00000540438 API5Q9BZZ5 524 aaKnown RBP21.13■□□□□ 0.97
USP28-208ENST00000540438 GSPT1P15170 499 aaKnown RBP21.12■□□□□ 0.97
USP28-208ENST00000540438 ANTXR1Q9H6X2 564 aa21.12■□□□□ 0.97
USP28-208ENST00000540438 AATKQ6ZMQ8 1374 aa21.12■□□□□ 0.97
USP28-208ENST00000540438 KIF13AQ9H1H9 1805 aa21.12■□□□□ 0.97
USP28-208ENST00000540438 MSH6P52701 1360 aa21.12■□□□□ 0.97
USP28-208ENST00000540438 LRRC59Q96AG4 307 aaKnown RBP21.12■□□□□ 0.97
USP28-208ENST00000540438 CDC42BPGQ6DT37 1551 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms