RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 MS4A3Q96HJ5 214 aa10.28□□□□□ -0.76
CCDC60-204ENST00000539847 GJD4Q96KN9 370 aaPredicted RBP10.28□□□□□ -0.76
CCDC60-204ENST00000539847 TESPA1A2RU30 521 aaPredicted RBP10.27□□□□□ -0.77
CCDC60-204ENST00000539847 PDE4AP27815 886 aa10.27□□□□□ -0.77
CCDC60-204ENST00000539847 WASHC2AQ641Q2 1341 aa10.27□□□□□ -0.77
CCDC60-204ENST00000539847 CCDC144AA2RUR9 1427 aa10.26□□□□□ -0.77
CCDC60-204ENST00000539847 BLMP54132 1417 aaPredicted RBP10.26□□□□□ -0.77
CCDC60-204ENST00000539847 FOXO3O43524 673 aa10.26□□□□□ -0.77
CCDC60-204ENST00000539847 HSPA5P11021 654 aaKnown RBP10.26□□□□□ -0.77
CCDC60-204ENST00000539847 UNC5CLQ8IV45 518 aa10.26□□□□□ -0.77
CCDC60-204ENST00000539847 PRKRIP1Q9H875 184 aaPredicted RBP10.26□□□□□ -0.77
CCDC60-204ENST00000539847 SLIT2O94813 1529 aa10.26□□□□□ -0.77
CCDC60-204ENST00000539847 SPATA31A3Q5VYP0 1347 aa10.26□□□□□ -0.77
CCDC60-204ENST00000539847 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.25□□□□□ -0.77
CCDC60-204ENST00000539847 PPLO60437 1756 aa10.25□□□□□ -0.77
CCDC60-204ENST00000539847 CRISPLD2Q9H0B8 497 aa10.25□□□□□ -0.77
CCDC60-204ENST00000539847 NOP58Q9Y2X3 529 aaKnown RBP10.25□□□□□ -0.77
CCDC60-204ENST00000539847 SMG6Q86US8 1419 aaKnown RBP10.24□□□□□ -0.77
CCDC60-204ENST00000539847 ONECUT3O60422 494 aaPredicted RBP10.24□□□□□ -0.77
CCDC60-204ENST00000539847 DEKP35659 375 aaKnown RBP10.24□□□□□ -0.77
CCDC60-204ENST00000539847 MFSD10Q14728 455 aa10.24□□□□□ -0.77
CCDC60-204ENST00000539847 SPATA31E1Q6ZUB1 1445 aa10.24□□□□□ -0.77
CCDC60-204ENST00000539847 RALGAPBQ86X10 1494 aa10.23□□□□□ -0.77
CCDC60-204ENST00000539847 MKRN3Q13064 507 aaKnown RBP10.23□□□□□ -0.77
CCDC60-204ENST00000539847 CCDC7Q96M83 1385 aa10.23□□□□□ -0.77
CCDC60-204ENST00000539847 PIK3C2GO75747 1445 aa10.23□□□□□ -0.77
CCDC60-204ENST00000539847 KIF1AQ12756 1690 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 MARF1Q9Y4F3 1742 aaKnown RBP10.22□□□□□ -0.77
CCDC60-204ENST00000539847 C19orf67A6NJJ6 358 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 PSME1Q06323 249 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 VPS72Q15906 364 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 DDX27Q96GQ7 796 aaKnown RBP10.22□□□□□ -0.77
CCDC60-204ENST00000539847 HIRIP3Q9BW71 556 aaPredicted RBP10.22□□□□□ -0.77
CCDC60-204ENST00000539847 ADGRF5Q8IZF2 1346 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 SBNO1A3KN83 1393 aa10.22□□□□□ -0.77
CCDC60-204ENST00000539847 ARHGEF10O15013 1369 aa10.21□□□□□ -0.78
CCDC60-204ENST00000539847 TNS3Q68CZ2 1445 aa10.21□□□□□ -0.78
CCDC60-204ENST00000539847 YTHDC2Q9H6S0 1430 aaKnown RBP10.21□□□□□ -0.78
CCDC60-204ENST00000539847 KNDC1Q76NI1 1749 aa10.21□□□□□ -0.78
CCDC60-204ENST00000539847 ZMYND10O75800 440 aa10.2□□□□□ -0.78
CCDC60-204ENST00000539847 SF3B2Q13435 895 aaKnown RBP10.2□□□□□ -0.78
CCDC60-204ENST00000539847 WAPLQ7Z5K2 1190 aa10.2□□□□□ -0.78
CCDC60-204ENST00000539847 USP32Q8NFA0 1604 aa10.2□□□□□ -0.78
CCDC60-204ENST00000539847 IPO9Q96P70 1041 aaKnown RBP10.2□□□□□ -0.78
CCDC60-204ENST00000539847 USP35Q9P2H5 1018 aa10.2□□□□□ -0.78
CCDC60-204ENST00000539847 GLI3P10071 1580 aa10.19□□□□□ -0.78
CCDC60-204ENST00000539847 XPCQ01831 940 aaPredicted RBP10.19□□□□□ -0.78
CCDC60-204ENST00000539847 KRT28Q7Z3Y7 464 aa10.19□□□□□ -0.78
CCDC60-204ENST00000539847 C14orf93Q9H972 538 aaKnown RBP10.19□□□□□ -0.78
CCDC60-204ENST00000539847 FMN2Q9NZ56 1722 aa10.19□□□□□ -0.78
CCDC60-204ENST00000539847 NRXN1Q9ULB1 1477 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 ANKARQ7Z5J8 1434 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 TTLL13PA6NNM8 815 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 SMYD5Q6GMV2 418 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 SEPT12Q8IYM1 358 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 STK26Q9P289 416 aa10.18□□□□□ -0.78
CCDC60-204ENST00000539847 PLEKHH1Q9ULM0 1364 aa10.17□□□□□ -0.78
CCDC60-204ENST00000539847 NWD2Q9ULI1 1742 aa10.17□□□□□ -0.78
CCDC60-204ENST00000539847 ANP32AP39687 249 aaKnown RBP10.17□□□□□ -0.78
CCDC60-204ENST00000539847 MRS2Q9HD23 443 aa10.17□□□□□ -0.78
CCDC60-204ENST00000539847 NUDCQ9Y266 331 aa10.17□□□□□ -0.78
CCDC60-204ENST00000539847 EIF3AQ14152 1382 aaKnown RBP10.16□□□□□ -0.78
CCDC60-204ENST00000539847 KTN1Q86UP2 1357 aaKnown RBP10.16□□□□□ -0.78
CCDC60-204ENST00000539847 LRP5O75197 1615 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 TIE1P35590 1138 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 CAMK2BQ13554 666 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 RGL3Q3MIN7 710 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 TMEM132EQ6IEE7 984 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 KRT27Q7Z3Y8 459 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 MPHOSPH9Q99550 1183 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.16□□□□□ -0.78
CCDC60-204ENST00000539847 ARIH1Q9Y4X5 557 aaPredicted RBP10.16□□□□□ -0.78
CCDC60-204ENST00000539847 IFT172Q9UG01 1749 aa10.16□□□□□ -0.78
CCDC60-204ENST00000539847 NUTM2FA1L443 756 aa10.15□□□□□ -0.78
CCDC60-204ENST00000539847 BAG6P46379 1132 aa10.15□□□□□ -0.78
CCDC60-204ENST00000539847 L3MBTL2Q969R5 705 aa10.15□□□□□ -0.78
CCDC60-204ENST00000539847 BMP2KQ9NSY1 1161 aaPredicted RBP10.15□□□□□ -0.78
CCDC60-204ENST00000539847 DLC1Q96QB1 1528 aa10.15□□□□□ -0.78
CCDC60-204ENST00000539847 ROCK2O75116 1388 aaKnown RBP10.14□□□□□ -0.79
CCDC60-204ENST00000539847 TCERG1O14776 1098 aaKnown RBP10.14□□□□□ -0.79
CCDC60-204ENST00000539847 MS4A1P11836 297 aa10.14□□□□□ -0.79
CCDC60-204ENST00000539847 B4GALNT3Q6L9W6 998 aa10.14□□□□□ -0.79
CCDC60-204ENST00000539847 STAC3Q96MF2 364 aa10.14□□□□□ -0.79
CCDC60-204ENST00000539847 DISP2A7MBM2 1401 aa10.14□□□□□ -0.79
CCDC60-204ENST00000539847 IRX6P78412 446 aaPredicted RBP10.13□□□□□ -0.79
CCDC60-204ENST00000539847 DPY19L2Q6NUT2 758 aa10.13□□□□□ -0.79
CCDC60-204ENST00000539847 BARGINQ6ZT62 677 aa10.13□□□□□ -0.79
CCDC60-204ENST00000539847 DEFB132Q7Z7B7 95 aa10.13□□□□□ -0.79
CCDC60-204ENST00000539847 ADGRB2O60241 1585 aa10.13□□□□□ -0.79
CCDC60-204ENST00000539847 INSRP06213 1382 aa10.13□□□□□ -0.79
CCDC60-204ENST00000539847 FAM83GA6ND36 823 aa10.12□□□□□ -0.79
CCDC60-204ENST00000539847 CCDC184Q52MB2 194 aa10.12□□□□□ -0.79
CCDC60-204ENST00000539847 RTL5Q5HYW3 569 aaPredicted RBP10.12□□□□□ -0.79
CCDC60-204ENST00000539847 PRAM1Q96QH2 718 aa10.12□□□□□ -0.79
CCDC60-204ENST00000539847 GPRASP1Q5JY77 1395 aa10.12□□□□□ -0.79
CCDC60-204ENST00000539847 C11orf95C9JLR9 678 aaPredicted RBP10.11□□□□□ -0.79
CCDC60-204ENST00000539847 GALR2O43603 387 aaPredicted RBP10.11□□□□□ -0.79
CCDC60-204ENST00000539847 PDE3BQ13370 1112 aa10.11□□□□□ -0.79
CCDC60-204ENST00000539847 PPP1R15BQ5SWA1 713 aa10.11□□□□□ -0.79
CCDC60-204ENST00000539847 FAM9BQ8IZU0 186 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms