RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 TULP4Q9NRJ4 1543 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 IDI1Q13907 227 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 CDK19Q9BWU1 502 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 API5Q9BZZ5 524 aaKnown RBP13.88□□□□□ -0.19
SYNE1-237ENST00000539504 STAG3Q9UJ98 1225 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 CASC1Q6TDU7 716 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 C16orf71Q8IYS4 520 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-237ENST00000539504 PKNOX2Q96KN3 472 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 MBIPQ9NS73 344 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 ADGRB2O60241 1585 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 ARAP3Q8WWN8 1544 aa13.87□□□□□ -0.19
SYNE1-237ENST00000539504 MROH1Q8NDA8 1641 aa13.87□□□□□ -0.19
SYNE1-237ENST00000539504 PRPF40AO75400 957 aaKnown RBP13.87□□□□□ -0.19
SYNE1-237ENST00000539504 GSPT1P15170 499 aaKnown RBP13.87□□□□□ -0.19
SYNE1-237ENST00000539504 ARHGAP45Q92619 1136 aa13.87□□□□□ -0.19
SYNE1-237ENST00000539504 ZMYND15Q9H091 742 aa13.87□□□□□ -0.19
SYNE1-237ENST00000539504 INTS3Q68E01 1043 aaKnown RBP13.86□□□□□ -0.19
SYNE1-237ENST00000539504 PLEKHM2Q8IWE5 1019 aa13.86□□□□□ -0.19
SYNE1-237ENST00000539504 ST18O60284 1047 aa13.86□□□□□ -0.19
SYNE1-237ENST00000539504 C8orf58Q8NAV2 365 aa13.86□□□□□ -0.19
SYNE1-237ENST00000539504 PKP1Q13835 747 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 DCTN1Q14203 1278 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 POLKQ9UBT6 870 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 EMILIN1Q9Y6C2 1016 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 CFAP44Q96MT7 982 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 ZSCAN23Q3MJ62 389 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 IFT57Q9NWB7 429 aa13.85□□□□□ -0.19
SYNE1-237ENST00000539504 R3HCC1Q9Y3T6 440 aaKnown RBP13.85□□□□□ -0.19
SYNE1-237ENST00000539504 FAM83GA6ND36 823 aa13.84□□□□□ -0.19
SYNE1-237ENST00000539504 SMARCA5O60264 1052 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-237ENST00000539504 RBM10P98175 930 aaKnown RBP13.84□□□□□ -0.19
SYNE1-237ENST00000539504 OTUD7AQ8TE49 926 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-237ENST00000539504 PPP1R9BQ96SB3 815 aa13.84□□□□□ -0.19
SYNE1-237ENST00000539504 RBM27Q9P2N5 1060 aaKnown RBP13.84□□□□□ -0.19
SYNE1-237ENST00000539504 GLI2P10070 1586 aa13.84□□□□□ -0.19
SYNE1-237ENST00000539504 TTC22Q5TAA0 569 aa13.84□□□□□ -0.19
SYNE1-237ENST00000539504 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.84□□□□□ -0.19
SYNE1-237ENST00000539504 ZGPATQ8N5A5 531 aaKnown RBP13.83□□□□□ -0.19
SYNE1-237ENST00000539504 USP32Q8NFA0 1604 aa13.83□□□□□ -0.19
SYNE1-237ENST00000539504 BRPF1P55201 1214 aaPredicted RBP13.83□□□□□ -0.2
SYNE1-237ENST00000539504 RAPGEF3O95398 923 aa13.83□□□□□ -0.2
SYNE1-237ENST00000539504 USP26Q9BXU7 913 aa13.83□□□□□ -0.2
SYNE1-237ENST00000539504 IFT172Q9UG01 1749 aa13.83□□□□□ -0.2
SYNE1-237ENST00000539504 ABCC4O15439 1325 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 LMOD3Q0VAK6 560 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 NOL8Q76FK4 1167 aaKnown RBP13.82□□□□□ -0.2
SYNE1-237ENST00000539504 RBSNQ9H1K0 784 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 COL3A1P02461 1466 aaPredicted RBP13.82□□□□□ -0.2
SYNE1-237ENST00000539504 PRIM1P49642 420 aaKnown RBP13.82□□□□□ -0.2
SYNE1-237ENST00000539504 CHAMP1Q96JM3 812 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 LMBRD1Q9NUN5 540 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 FAM13BQ9NYF5 915 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 ASXL2Q76L83 1435 aa13.82□□□□□ -0.2
SYNE1-237ENST00000539504 DCTPP1Q9H773 170 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 ZBTB7CA1YPR0 619 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 OFD1O75665 1012 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 SDSP20132 328 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 RNF214Q8ND24 703 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 XPCQ01831 940 aaPredicted RBP13.81□□□□□ -0.2
SYNE1-237ENST00000539504 ARID3AQ99856 593 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 LMTK2Q8IWU2 1503 aa13.81□□□□□ -0.2
SYNE1-237ENST00000539504 REC8O95072 547 aa13.8□□□□□ -0.2
SYNE1-237ENST00000539504 ZNF445P59923 1031 aa13.8□□□□□ -0.2
SYNE1-237ENST00000539504 CWC22Q9HCG8 908 aaKnown RBP13.8□□□□□ -0.2
SYNE1-237ENST00000539504 PTMAP06454 111 aaKnown RBP13.8□□□□□ -0.2
SYNE1-237ENST00000539504 FOXD4L6Q3SYB3 417 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-237ENST00000539504 TPRNQ4KMQ1 711 aa13.8□□□□□ -0.2
SYNE1-237ENST00000539504 FOXD4L3Q6VB84 417 aaPredicted RBP13.8□□□□□ -0.2
SYNE1-237ENST00000539504 CFAP74Q9C0B2 1584 aa13.8□□□□□ -0.2
SYNE1-237ENST00000539504 RRS1Q15050 365 aaKnown RBP13.8□□□□□ -0.2
SYNE1-237ENST00000539504 WAPLQ7Z5K2 1190 aa13.8□□□□□ -0.2
SYNE1-237ENST00000539504 SYCE3A1L190 88 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 KRT24Q2M2I5 525 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 ABCA9Q8IUA7 1624 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 CLEC17AQ6ZS10 378 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 NME9Q86XW9 330 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 ZRANB1Q9UGI0 708 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 PNPLA6Q8IY17 1366 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 MED14O60244 1454 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 SLC4A10Q6U841 1118 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 PDCL3Q9H2J4 239 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 SLC52A1Q9NWF4 448 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 PTCH1Q13635 1447 aa13.79□□□□□ -0.2
SYNE1-237ENST00000539504 ZC3H13Q5T200 1668 aaKnown RBP13.79□□□□□ -0.2
SYNE1-237ENST00000539504 NEK4P51957 841 aa13.78□□□□□ -0.2
SYNE1-237ENST00000539504 PPLO60437 1756 aa13.78□□□□□ -0.2
SYNE1-237ENST00000539504 ZFYVE9O95405 1425 aa13.78□□□□□ -0.2
SYNE1-237ENST00000539504 FAM135BQ49AJ0 1406 aa13.78□□□□□ -0.2
SYNE1-237ENST00000539504 ANKRD44Q8N8A2 993 aa13.78□□□□□ -0.2
SYNE1-237ENST00000539504 IBTKQ9P2D0 1353 aaPredicted RBP13.77□□□□□ -0.2
SYNE1-237ENST00000539504 LRRC7Q96NW7 1537 aa13.77□□□□□ -0.2
SYNE1-237ENST00000539504 KIDINS220Q9ULH0 1771 aa13.77□□□□□ -0.21
SYNE1-237ENST00000539504 PIK3R4Q99570 1358 aa13.77□□□□□ -0.21
SYNE1-237ENST00000539504 ERC2O15083 957 aa13.77□□□□□ -0.21
SYNE1-237ENST00000539504 RPAP2Q8IXW5 612 aaPredicted RBP13.77□□□□□ -0.21
SYNE1-237ENST00000539504 GPT2Q8TD30 523 aa13.77□□□□□ -0.21
SYNE1-237ENST00000539504 ZNF853P0CG23 659 aa13.76□□□□□ -0.21
SYNE1-237ENST00000539504 IL13P35225 146 aa13.76□□□□□ -0.21
SYNE1-237ENST00000539504 COG3Q96JB2 828 aa13.76□□□□□ -0.21
SYNE1-237ENST00000539504 MEIS3Q99687 375 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms