RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 IPO8O15397 1037 aaKnown RBP11.14□□□□□ -0.63
SNHG1-209ENST00000538654 BAG4O95429 457 aaKnown RBP11.14□□□□□ -0.63
SNHG1-209ENST00000538654 BRD1O95696 1058 aa11.14□□□□□ -0.63
SNHG1-209ENST00000538654 NUCB2P80303 420 aa11.14□□□□□ -0.63
SNHG1-209ENST00000538654 TRIM27P14373 513 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 PDLIM2Q96JY6 352 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 CHMP4BQ9H444 224 aaKnown RBP11.13□□□□□ -0.63
SNHG1-209ENST00000538654 MYOM2P54296 1465 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 MAP3K4Q9Y6R4 1608 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 CHD1LQ86WJ1 897 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 TEX2Q8IWB9 1127 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 ZBTB40Q9NUA8 1239 aa11.13□□□□□ -0.63
SNHG1-209ENST00000538654 NSD3Q9BZ95 1437 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 UQCRHLA0A096LP55 91 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 UQCRHP07919 91 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 SSFA2P28290 1259 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 KIF2CQ99661 725 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 ABCC11Q96J66 1382 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 HS6ST3Q8IZP7 471 aa11.12□□□□□ -0.63
SNHG1-209ENST00000538654 ZKSCAN5Q9Y2L8 839 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 TET3O43151 1660 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 SASS6Q6UVJ0 657 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 CCDC39Q9UFE4 941 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 ABCA6Q8N139 1617 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 IL16Q14005 1332 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 ZSCAN23Q3MJ62 389 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 CC2D2BQ6DHV5 1058 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 GCC1Q96CN9 775 aa11.11□□□□□ -0.63
SNHG1-209ENST00000538654 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.1□□□□□ -0.63
SNHG1-209ENST00000538654 UNCXA6NJT0 531 aa11.1□□□□□ -0.63
SNHG1-209ENST00000538654 GAS2L2Q8NHY3 880 aa11.1□□□□□ -0.63
SNHG1-209ENST00000538654 LNPKQ9C0E8 428 aa11.1□□□□□ -0.63
SNHG1-209ENST00000538654 NSD2O96028 1365 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 MTHFSP49914 203 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 RABEP1Q15276 862 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 SSH1Q8WYL5 1049 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 NOS1P29475 1434 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 EXOSC9Q06265 439 aaKnown RBP11.09□□□□□ -0.63
SNHG1-209ENST00000538654 CAVIN1Q6NZI2 390 aaKnown RBP11.09□□□□□ -0.63
SNHG1-209ENST00000538654 TMEM57Q8N5G2 664 aa11.09□□□□□ -0.63
SNHG1-209ENST00000538654 NOB1Q9ULX3 412 aaKnown RBP11.09□□□□□ -0.63
SNHG1-209ENST00000538654 CARNS1A5YM72 827 aa11.08□□□□□ -0.64
SNHG1-209ENST00000538654 MCTP1Q6DN14 999 aa11.08□□□□□ -0.64
SNHG1-209ENST00000538654 TRAIPQ9BWF2 469 aa11.08□□□□□ -0.64
SNHG1-209ENST00000538654 DEPDC5O75140 1603 aa11.08□□□□□ -0.64
SNHG1-209ENST00000538654 CD2BP2O95400 341 aaKnown RBP11.08□□□□□ -0.64
SNHG1-209ENST00000538654 UTP14CQ5TAP6 766 aaKnown RBP11.08□□□□□ -0.64
SNHG1-209ENST00000538654 TBC1D9Q6ZT07 1266 aa11.08□□□□□ -0.64
SNHG1-209ENST00000538654 CDC45O75419 566 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 U2AF1L5P0DN76 240 aaPredicted RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 U2AF1Q01081 240 aaKnown RBP eCLIP11.07□□□□□ -0.642e-12■■■□□ 16.4
SNHG1-209ENST00000538654 XPCQ01831 940 aaPredicted RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 ALDH1L2Q3SY69 923 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 PLCD4Q9BRC7 762 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 RBSNQ9H1K0 784 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 LMBRD1Q9NUN5 540 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 SETBP1Q9Y6X0 1596 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 KIF1BO60333 1816 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 ZC3H13Q5T200 1668 aaKnown RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 TNNT2P45379 298 aaPredicted RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 IFT172Q9UG01 1749 aa11.07□□□□□ -0.64
SNHG1-209ENST00000538654 INO80Q9ULG1 1556 aaPredicted RBP11.07□□□□□ -0.64
SNHG1-209ENST00000538654 CFAP70Q5T0N1 1121 aa11.06□□□□□ -0.64
SNHG1-209ENST00000538654 TSR2Q969E8 191 aaKnown RBP11.06□□□□□ -0.64
SNHG1-209ENST00000538654 CCDC94Q9BW85 323 aaPredicted RBP11.06□□□□□ -0.64
SNHG1-209ENST00000538654 CYP2E1P05181 493 aaPredicted RBP11.06□□□□□ -0.64
SNHG1-209ENST00000538654 FOXD4L6Q3SYB3 417 aaPredicted RBP11.06□□□□□ -0.64
SNHG1-209ENST00000538654 FOXD4L3Q6VB84 417 aaPredicted RBP11.06□□□□□ -0.64
SNHG1-209ENST00000538654 CCDC125Q86Z20 511 aa11.06□□□□□ -0.64
SNHG1-209ENST00000538654 MED14O60244 1454 aa11.06□□□□□ -0.64
SNHG1-209ENST00000538654 AK9Q5TCS8 1911 aa11.05□□□□□ -0.64
SNHG1-209ENST00000538654 PPRC1Q5VV67 1664 aaKnown RBP11.05□□□□□ -0.64
SNHG1-209ENST00000538654 ANKRD45Q5TZF3 282 aa11.05□□□□□ -0.64
SNHG1-209ENST00000538654 LRSAM1Q6UWE0 723 aa11.05□□□□□ -0.64
SNHG1-209ENST00000538654 FAM117AQ9C073 453 aa11.05□□□□□ -0.64
SNHG1-209ENST00000538654 TRAPPC8Q9Y2L5 1435 aa11.05□□□□□ -0.64
SNHG1-209ENST00000538654 PRIM1P49642 420 aaKnown RBP11.05□□□□□ -0.64
SNHG1-209ENST00000538654 QRICH2Q9H0J4 1663 aa11.04□□□□□ -0.64
SNHG1-209ENST00000538654 NRXN1Q9ULB1 1477 aa11.04□□□□□ -0.64
SNHG1-209ENST00000538654 MBD3O95983 291 aa11.04□□□□□ -0.64
SNHG1-209ENST00000538654 ABCC1P33527 1531 aa11.04□□□□□ -0.64
SNHG1-209ENST00000538654 SPDYE4A6NLX3 237 aa11.04□□□□□ -0.64
SNHG1-209ENST00000538654 TMPOP42166 694 aaKnown RBP11.04□□□□□ -0.64
SNHG1-209ENST00000538654 HMGN5P82970 282 aaKnown RBP11.04□□□□□ -0.64
SNHG1-209ENST00000538654 RBM42Q9BTD8 480 aaKnown RBP11.04□□□□□ -0.64
SNHG1-209ENST00000538654 ATXN8OSP0DMR3 200 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 DMTNQ08495 405 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 KIAA2012Q0VF49 1180 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 PRIMPOLQ96LW4 560 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 KCNG1Q9UIX4 513 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 EFCAB2Q5VUJ9 269 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 PLCH2O75038 1416 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 YEATS2Q9ULM3 1422 aa11.03□□□□□ -0.64
SNHG1-209ENST00000538654 VWDEQ8N2E2 1590 aa11.02□□□□□ -0.64
SNHG1-209ENST00000538654 ST18O60284 1047 aa11.02□□□□□ -0.64
SNHG1-209ENST00000538654 MYRIPQ8NFW9 859 aa11.02□□□□□ -0.64
SNHG1-209ENST00000538654 PPIP5K1Q6PFW1 1433 aa11.02□□□□□ -0.65
SNHG1-209ENST00000538654 ARHGAP45Q92619 1136 aa11.02□□□□□ -0.65
SNHG1-209ENST00000538654 SLC12A5Q9H2X9 1139 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms