RNA–Protein interactions for RNA: ENST00000538174.6

PTPRB-203, Transcript of protein tyrosine phosphatase, receptor type B, humanhuman

TSL 1 (best)

Gene PTPRB, Length 2,661 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRB-203ENST00000538174 DEKP35659 375 aaKnown RBP9.08□□□□□ -0.96
PTPRB-203ENST00000538174 DEFB132Q7Z7B7 95 aa9.08□□□□□ -0.96
PTPRB-203ENST00000538174 L3MBTL2Q969R5 705 aa9.08□□□□□ -0.96
PTPRB-203ENST00000538174 TULP4Q9NRJ4 1543 aa9.07□□□□□ -0.96
PTPRB-203ENST00000538174 CPDO75976 1380 aa9.07□□□□□ -0.96
PTPRB-203ENST00000538174 DDX10Q13206 875 aaKnown RBP9.07□□□□□ -0.96
PTPRB-203ENST00000538174 NECTIN2Q92692 538 aa9.07□□□□□ -0.96
PTPRB-203ENST00000538174 KIAA1210Q9ULL0 1709 aa9.07□□□□□ -0.96
PTPRB-203ENST00000538174 PIK3C2GO75747 1445 aa9.07□□□□□ -0.96
PTPRB-203ENST00000538174 HSPA5P11021 654 aaKnown RBP9.07□□□□□ -0.96
PTPRB-203ENST00000538174 TOPAZ1Q8N9V7 1692 aa9.06□□□□□ -0.96
PTPRB-203ENST00000538174 SHANK3Q9BYB0 1731 aa9.06□□□□□ -0.96
PTPRB-203ENST00000538174 ORAI2Q96SN7 254 aa9.06□□□□□ -0.96
PTPRB-203ENST00000538174 ARID3AQ99856 593 aa9.06□□□□□ -0.96
PTPRB-203ENST00000538174 TMED8Q6PL24 325 aaPredicted RBP9.06□□□□□ -0.96
PTPRB-203ENST00000538174 CICQ96RK0 1608 aaPredicted RBP9.05□□□□□ -0.96
PTPRB-203ENST00000538174 SPATA31A1Q5TZJ5 1347 aa9.04□□□□□ -0.96
PTPRB-203ENST00000538174 ZNF784Q8NCA9 323 aaPredicted RBP9.04□□□□□ -0.96
PTPRB-203ENST00000538174 ZMYND15Q9H091 742 aa9.04□□□□□ -0.96
PTPRB-203ENST00000538174 NUP155O75694 1391 aa9.04□□□□□ -0.96
PTPRB-203ENST00000538174 PCDH10Q9P2E7 1040 aa9.04□□□□□ -0.96
PTPRB-203ENST00000538174 NHSQ6T4R5 1651 aa9.03□□□□□ -0.96
PTPRB-203ENST00000538174 KRT28Q7Z3Y7 464 aa9.03□□□□□ -0.96
PTPRB-203ENST00000538174 LRRC37A3O60309 1634 aa9.03□□□□□ -0.96
PTPRB-203ENST00000538174 CDCA7Q9BWT1 371 aaPredicted RBP9.03□□□□□ -0.96
PTPRB-203ENST00000538174 USP54Q70EL1 1684 aa9.03□□□□□ -0.96
PTPRB-203ENST00000538174 OVOS2A0A0G2JMS6 1433 aa9.02□□□□□ -0.96
PTPRB-203ENST00000538174 OVOS2A0A0J9YW53 1432 aa9.02□□□□□ -0.96
PTPRB-203ENST00000538174 OVOS2Q6IE36 1432 aa9.02□□□□□ -0.96
PTPRB-203ENST00000538174 YTHDC2Q9H6S0 1430 aaKnown RBP9.02□□□□□ -0.96
PTPRB-203ENST00000538174 R3HDM1Q15032 1099 aaKnown RBP9.02□□□□□ -0.97
PTPRB-203ENST00000538174 ZBED9Q6R2W3 1325 aa9.02□□□□□ -0.97
PTPRB-203ENST00000538174 AKAP12Q02952 1782 aa9.02□□□□□ -0.97
PTPRB-203ENST00000538174 YTHDC1Q96MU7 727 aaKnown RBP9.02□□□□□ -0.97
PTPRB-203ENST00000538174 PRKRIP1Q9H875 184 aaPredicted RBP9.02□□□□□ -0.97
PTPRB-203ENST00000538174 ESCO1Q5FWF5 840 aa9.01□□□□□ -0.97
PTPRB-203ENST00000538174 PRDM10Q9NQV6 1147 aa9.01□□□□□ -0.97
PTPRB-203ENST00000538174 PHF8Q9UPP1 1060 aa9.01□□□□□ -0.97
PTPRB-203ENST00000538174 GLIPR1L2Q4G1C9 344 aa9□□□□□ -0.97
PTPRB-203ENST00000538174 SSH2Q76I76 1423 aa9□□□□□ -0.97
PTPRB-203ENST00000538174 RGPD8O14715 1765 aaPredicted RBP9□□□□□ -0.97
PTPRB-203ENST00000538174 EN1Q05925 392 aaPredicted RBP9□□□□□ -0.97
PTPRB-203ENST00000538174 QRICH2Q9H0J4 1663 aa9□□□□□ -0.97
PTPRB-203ENST00000538174 SENP3-EIF4A1A0A087X0R7 540 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 ZBTB7CA1YPR0 619 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 USP47Q96K76 1375 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 SLIT3O75094 1523 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 C10orf71Q711Q0 1435 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 KIF7Q2M1P5 1343 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 SLC16A10Q8TF71 515 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 CHIC2Q9UKJ5 165 aa8.99□□□□□ -0.97
PTPRB-203ENST00000538174 RNF123Q5XPI4 1314 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 PSDA5PKW4 1024 aaPredicted RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 CLSTN1O94985 981 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 NCLP19338 710 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 DDX17Q92841 729 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 ZNF692Q9BU19 519 aaPredicted RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 PPP1R1BQ9UD71 204 aaPredicted RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 NAP1L2Q9ULW6 460 aaPredicted RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 SMG6Q86US8 1419 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 ARHGEF28Q8N1W1 1705 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 EZH2Q15910 746 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 SGIP1Q9BQI5 828 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 FAM83GA6ND36 823 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 CHGAP10645 457 aaKnown RBP8.98□□□□□ -0.97
PTPRB-203ENST00000538174 RALBP1Q15311 655 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 CNPY4Q8N129 248 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 ZNF428Q96B54 188 aa8.98□□□□□ -0.97
PTPRB-203ENST00000538174 ADCY9O60503 1353 aa8.97□□□□□ -0.97
PTPRB-203ENST00000538174 USP19O94966 1318 aa8.97□□□□□ -0.97
PTPRB-203ENST00000538174 POLR3AO14802 1390 aaPredicted RBP8.97□□□□□ -0.97
PTPRB-203ENST00000538174 GIGYF1O75420 1035 aaPredicted RBP8.97□□□□□ -0.97
PTPRB-203ENST00000538174 MTFR1LQ9H019 292 aa8.97□□□□□ -0.97
PTPRB-203ENST00000538174 NPC1L1Q9UHC9 1359 aa8.96□□□□□ -0.97
PTPRB-203ENST00000538174 PTGER2P43116 358 aa8.96□□□□□ -0.98
PTPRB-203ENST00000538174 CERS3Q8IU89 383 aa8.96□□□□□ -0.98
PTPRB-203ENST00000538174 ADGRB1O14514 1584 aa8.96□□□□□ -0.98
PTPRB-203ENST00000538174 NBR1Q14596 966 aa8.95□□□□□ -0.98
PTPRB-203ENST00000538174 PSMD1Q99460 953 aa8.95□□□□□ -0.98
PTPRB-203ENST00000538174 COL18A1P39060 1754 aa8.95□□□□□ -0.98
PTPRB-203ENST00000538174 FOXO3O43524 673 aa8.95□□□□□ -0.98
PTPRB-203ENST00000538174 CWC22Q9HCG8 908 aaKnown RBP8.95□□□□□ -0.98
PTPRB-203ENST00000538174 APBA3O96018 575 aa8.94□□□□□ -0.98
PTPRB-203ENST00000538174 FAM208AQ9UK61 1670 aaKnown RBP8.94□□□□□ -0.98
PTPRB-203ENST00000538174 CRB1P82279 1406 aa8.94□□□□□ -0.98
PTPRB-203ENST00000538174 GRIN3BO60391 1043 aa8.94□□□□□ -0.98
PTPRB-203ENST00000538174 PIK3C2AO00443 1686 aa8.93□□□□□ -0.98
PTPRB-203ENST00000538174 SLC34A2O95436 690 aa8.93□□□□□ -0.98
PTPRB-203ENST00000538174 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.93□□□□□ -0.98
PTPRB-203ENST00000538174 PDE3BQ13370 1112 aa8.93□□□□□ -0.98
PTPRB-203ENST00000538174 FAM98CQ17RN3 349 aaKnown RBP8.93□□□□□ -0.98
PTPRB-203ENST00000538174 C14orf93Q9H972 538 aaKnown RBP8.93□□□□□ -0.98
PTPRB-203ENST00000538174 TCP11L2Q8N4U5 519 aa8.92□□□□□ -0.98
PTPRB-203ENST00000538174 BTG4Q9NY30 223 aa8.92□□□□□ -0.98
PTPRB-203ENST00000538174 COL5A2P05997 1499 aaPredicted RBP8.92□□□□□ -0.98
PTPRB-203ENST00000538174 HSPA6P17066 643 aa8.91□□□□□ -0.98
PTPRB-203ENST00000538174 TEX2Q8IWB9 1127 aa8.91□□□□□ -0.98
PTPRB-203ENST00000538174 SBNO2Q9Y2G9 1366 aa8.91□□□□□ -0.98
PTPRB-203ENST00000538174 STK32BQ9NY57 414 aa8.9□□□□□ -0.98
PTPRB-203ENST00000538174 CHRM1P11229 460 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms