RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 PLEKHH1Q9ULM0 1364 aa8.23□□□□□ -1.09
SYNE1-233ENST00000535896 RPGRIP1LQ68CZ1 1315 aa8.23□□□□□ -1.09
SYNE1-233ENST00000535896 CHGAP10645 457 aaKnown RBP8.22□□□□□ -1.09
SYNE1-233ENST00000535896 GPR153Q6NV75 609 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 ANKLE2Q86XL3 938 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.22□□□□□ -1.09
SYNE1-233ENST00000535896 EID1Q9Y6B2 187 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 MED14O60244 1454 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 ZFYVE9O95405 1425 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 RIMS2Q9UQ26 1411 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 SOX12O15370 315 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 FAM161AQ3B820 660 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 RGL3Q3MIN7 710 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 CC2D1BQ5T0F9 858 aaKnown RBP8.22□□□□□ -1.09
SYNE1-233ENST00000535896 CRBNQ96SW2 442 aa8.22□□□□□ -1.09
SYNE1-233ENST00000535896 STRCQ7RTU9 1775 aa8.21□□□□□ -1.09
SYNE1-233ENST00000535896 ANKRD26Q9UPS8 1709 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 NEXMIFQ5QGS0 1516 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 CGNL1Q0VF96 1302 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 IQSEC2Q5JU85 1478 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 E9PSI1 815 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 SLFN5Q08AF3 891 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 NBR1Q14596 966 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 CDCA7LQ96GN5 454 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 ADAMTS8Q9UP79 889 aa8.21□□□□□ -1.1
SYNE1-233ENST00000535896 ADGRB2O60241 1585 aa8.2□□□□□ -1.1
SYNE1-233ENST00000535896 NPHP4O75161 1426 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-233ENST00000535896 PDE3AQ14432 1141 aa8.2□□□□□ -1.1
SYNE1-233ENST00000535896 TXNDC2Q86VQ3 553 aa8.2□□□□□ -1.1
SYNE1-233ENST00000535896 PUS7Q96PZ0 661 aaKnown RBP8.2□□□□□ -1.1
SYNE1-233ENST00000535896 NSD2O96028 1365 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 PLEKHG1Q9ULL1 1385 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 MAPK8IP3Q9UPT6 1336 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 ARHGEF28Q8N1W1 1705 aaKnown RBP8.19□□□□□ -1.1
SYNE1-233ENST00000535896 ADGRB1O14514 1584 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 LTKP29376 864 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 CNGB1Q14028 1251 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-233ENST00000535896 MS4A4AQ96JQ5 239 aa8.19□□□□□ -1.1
SYNE1-233ENST00000535896 NCKAP5LQ9HCH0 1330 aa8.18□□□□□ -1.1
SYNE1-233ENST00000535896 DIP2AQ14689 1571 aa8.18□□□□□ -1.1
SYNE1-233ENST00000535896 VGFO15240 615 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-233ENST00000535896 RIOK3O14730 519 aaKnown RBP8.17□□□□□ -1.1
SYNE1-233ENST00000535896 NEFMP07197 916 aa8.17□□□□□ -1.1
SYNE1-233ENST00000535896 PLCB2Q00722 1185 aa8.17□□□□□ -1.1
SYNE1-233ENST00000535896 ARSIQ5FYB1 569 aa8.17□□□□□ -1.1
SYNE1-233ENST00000535896 PHF8Q9UPP1 1060 aa8.17□□□□□ -1.1
SYNE1-233ENST00000535896 C8orf34Q49A92 452 aa8.16□□□□□ -1.1
SYNE1-233ENST00000535896 DAXXQ9UER7 740 aaPredicted RBP8.16□□□□□ -1.1
SYNE1-233ENST00000535896 PIK3R4Q99570 1358 aa8.15□□□□□ -1.1
SYNE1-233ENST00000535896 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-233ENST00000535896 CCDC27Q2M243 656 aa8.15□□□□□ -1.1
SYNE1-233ENST00000535896 ANKRD13DQ6ZTN6 518 aa8.15□□□□□ -1.1
SYNE1-233ENST00000535896 NPM2Q86SE8 214 aaKnown RBP8.15□□□□□ -1.1
SYNE1-233ENST00000535896 ZFP91Q96JP5 570 aaPredicted RBP8.15□□□□□ -1.1
SYNE1-233ENST00000535896 NRXN3Q9Y4C0 1643 aa8.15□□□□□ -1.1
SYNE1-233ENST00000535896 PLIN1O60240 522 aa8.14□□□□□ -1.11
SYNE1-233ENST00000535896 CT47B1P0C2W7 299 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-233ENST00000535896 TBX22Q9Y458 520 aa8.14□□□□□ -1.11
SYNE1-233ENST00000535896 SALL2Q9Y467 1007 aaPredicted RBP8.14□□□□□ -1.11
SYNE1-233ENST00000535896 ADAMTS13Q76LX8 1427 aa8.14□□□□□ -1.11
SYNE1-233ENST00000535896 NUTM2DQ5VT03 806 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-233ENST00000535896 RNF25Q96BH1 459 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-233ENST00000535896 CENPJQ9HC77 1338 aaPredicted RBP8.13□□□□□ -1.11
SYNE1-233ENST00000535896 C20orf194Q5TEA3 1177 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 WDR63Q8IWG1 891 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 PMFBP1Q8TBY8 1022 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 KHSRPQ92945 711 aaKnown RBP eCLIP8.12□□□□□ -1.11
SYNE1-233ENST00000535896 NWD1Q149M9 1564 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 CDC42BPGQ6DT37 1551 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 ADGRF5Q8IZF2 1346 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 ALKQ9UM73 1620 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 CPS1P31327 1500 aa8.12□□□□□ -1.11
SYNE1-233ENST00000535896 SETD1AO15047 1707 aaKnown RBP8.11□□□□□ -1.11
SYNE1-233ENST00000535896 NSD3Q9BZ95 1437 aa8.11□□□□□ -1.11
SYNE1-233ENST00000535896 CLUAP1Q96AJ1 413 aa8.11□□□□□ -1.11
SYNE1-233ENST00000535896 SLC26A8Q96RN1 970 aa8.11□□□□□ -1.11
SYNE1-233ENST00000535896 KIF20BQ96Q89 1820 aa8.11□□□□□ -1.11
SYNE1-233ENST00000535896 ANKRD36BQ8N2N9 1353 aa8.11□□□□□ -1.11
SYNE1-233ENST00000535896 KCNA6P17658 529 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 LSM11P83369 360 aaKnown RBP eCLIP8.1□□□□□ -1.11
SYNE1-233ENST00000535896 BECN1Q14457 450 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 NFKBIBQ15653 356 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 RUNDC1Q96C34 613 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 C14orf93Q9H972 538 aaKnown RBP8.1□□□□□ -1.11
SYNE1-233ENST00000535896 ABCC11Q96J66 1382 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 CHD2O14647 1828 aaKnown RBP8.1□□□□□ -1.11
SYNE1-233ENST00000535896 APAF1O14727 1248 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 PBX2P40425 430 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 NLRP6P59044 892 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 WWC1Q8IX03 1113 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 CFAP53Q96M91 514 aa8.1□□□□□ -1.11
SYNE1-233ENST00000535896 LAS1LQ9Y4W2 734 aaKnown RBP8.1□□□□□ -1.11
SYNE1-233ENST00000535896 XRN1Q8IZH2 1706 aaKnown RBP8.09□□□□□ -1.11
SYNE1-233ENST00000535896 TULP4Q9NRJ4 1543 aa8.09□□□□□ -1.11
SYNE1-233ENST00000535896 LTBP4Q8N2S1 1624 aa8.09□□□□□ -1.11
SYNE1-233ENST00000535896 UPF2Q9HAU5 1272 aaKnown RBP8.09□□□□□ -1.12
SYNE1-233ENST00000535896 ZNF335Q9H4Z2 1342 aaPredicted RBP8.08□□□□□ -1.12
SYNE1-233ENST00000535896 METP08581 1390 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 TECPR2O15040 1411 aa8.08□□□□□ -1.12
SYNE1-233ENST00000535896 PTCH1Q13635 1447 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms