RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 RBM10P98175 930 aaKnown RBP16.6■□□□□ 0.25
HDAC4-214ENST00000535493 TWISTNBQ3B726 338 aaPredicted RBP16.6■□□□□ 0.25
HDAC4-214ENST00000535493 PLEKHM2Q8IWE5 1019 aa16.6■□□□□ 0.25
HDAC4-214ENST00000535493 GLI2P10070 1586 aa16.6■□□□□ 0.25
HDAC4-214ENST00000535493 CDC45O75419 566 aa16.6■□□□□ 0.25
HDAC4-214ENST00000535493 FCHSD2O94868 740 aa16.6■□□□□ 0.25
HDAC4-214ENST00000535493 NCBP3Q53F19 620 aaKnown RBP16.6■□□□□ 0.25
HDAC4-214ENST00000535493 ARID3AQ99856 593 aa16.59■□□□□ 0.25
HDAC4-214ENST00000535493 ZC3H13Q5T200 1668 aaKnown RBP16.59■□□□□ 0.25
HDAC4-214ENST00000535493 RRP9O43818 475 aaKnown RBP16.59■□□□□ 0.25
HDAC4-214ENST00000535493 GLIPR1L2Q4G1C9 344 aa16.59■□□□□ 0.25
HDAC4-214ENST00000535493 WAPLQ7Z5K2 1190 aa16.59■□□□□ 0.25
HDAC4-214ENST00000535493 PRPF40AO75400 957 aaKnown RBP16.58■□□□□ 0.25
HDAC4-214ENST00000535493 HDGFL2Q7Z4V5 671 aaPredicted RBP16.58■□□□□ 0.24
HDAC4-214ENST00000535493 ISY1Q9ULR0 285 aaKnown RBP16.58■□□□□ 0.24
HDAC4-214ENST00000535493 UHRF1BP1LA0JNW5 1464 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 RPGRIP1LQ68CZ1 1315 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 KLHL40Q2TBA0 621 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 FOXD4L6Q3SYB3 417 aaPredicted RBP16.57■□□□□ 0.24
HDAC4-214ENST00000535493 FOXD4L3Q6VB84 417 aaPredicted RBP16.57■□□□□ 0.24
HDAC4-214ENST00000535493 KIDINS220Q9ULH0 1771 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 RRS1Q15050 365 aaKnown RBP16.57■□□□□ 0.24
HDAC4-214ENST00000535493 NFE2L2Q16236 605 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 PKNOX2Q96KN3 472 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 NEURL4Q96JN8 1562 aa16.57■□□□□ 0.24
HDAC4-214ENST00000535493 PRIM1P49642 420 aaKnown RBP16.56■□□□□ 0.24
HDAC4-214ENST00000535493 ZSCAN23Q3MJ62 389 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 TPRNQ4KMQ1 711 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 RBSNQ9H1K0 784 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 PPLO60437 1756 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 CALD1Q05682 793 aaKnown RBP16.56■□□□□ 0.24
HDAC4-214ENST00000535493 CCDC173Q0VFZ6 552 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 ANP32BQ92688 251 aaKnown RBP16.56■□□□□ 0.24
HDAC4-214ENST00000535493 NCKAP5LQ9HCH0 1330 aa16.56■□□□□ 0.24
HDAC4-214ENST00000535493 TSHZ3Q63HK5 1081 aa16.55■□□□□ 0.24
HDAC4-214ENST00000535493 NOL8Q76FK4 1167 aaKnown RBP16.55■□□□□ 0.24
HDAC4-214ENST00000535493 NSFL1CQ9UNZ2 370 aaKnown RBP16.55■□□□□ 0.24
HDAC4-214ENST00000535493 CAMSAP1Q5T5Y3 1602 aa16.55■□□□□ 0.24
HDAC4-214ENST00000535493 MSNP26038 577 aaKnown RBP16.54■□□□□ 0.24
HDAC4-214ENST00000535493 XPCQ01831 940 aaPredicted RBP16.54■□□□□ 0.24
HDAC4-214ENST00000535493 ZSCAN30Q86W11 494 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 USP26Q9BXU7 913 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 LMBRD1Q9NUN5 540 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 USP32Q8NFA0 1604 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 ASXL2Q76L83 1435 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 MPNDQ8N594 471 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 CD163L1Q9NR16 1453 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 LRRC7Q96NW7 1537 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 NME9Q86XW9 330 aa16.54■□□□□ 0.24
HDAC4-214ENST00000535493 R3HCC1Q9Y3T6 440 aaKnown RBP16.54■□□□□ 0.24
HDAC4-214ENST00000535493 ABCA9Q8IUA7 1624 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 ABCC4O15439 1325 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 SDSP20132 328 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 FBXO31Q5XUX0 539 aaPredicted RBP16.53■□□□□ 0.24
HDAC4-214ENST00000535493 RNF214Q8ND24 703 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 GPT2Q8TD30 523 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 PUS7Q96PZ0 661 aaKnown RBP16.53■□□□□ 0.24
HDAC4-214ENST00000535493 PPP1R9BQ96SB3 815 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 GNAI1P63096 354 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 TTC22Q5TAA0 569 aa16.53■□□□□ 0.24
HDAC4-214ENST00000535493 CFAP74Q9C0B2 1584 aa16.52■□□□□ 0.24
HDAC4-214ENST00000535493 ARHGEF28Q8N1W1 1705 aaKnown RBP16.52■□□□□ 0.24
HDAC4-214ENST00000535493 PNPLA6Q8IY17 1366 aa16.52■□□□□ 0.23
HDAC4-214ENST00000535493 ZDHHC9Q9Y397 364 aa16.52■□□□□ 0.23
HDAC4-214ENST00000535493 ARAP3Q8WWN8 1544 aa16.52■□□□□ 0.23
HDAC4-214ENST00000535493 MED14O60244 1454 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 RABEP1Q15276 862 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 SYCE3A1L190 88 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 ARHGAP45Q92619 1136 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 FAM13BQ9NYF5 915 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 MIS18AQ9NYP9 233 aa16.51■□□□□ 0.23
HDAC4-214ENST00000535493 DCTPP1Q9H773 170 aa16.5■□□□□ 0.23
HDAC4-214ENST00000535493 IFT57Q9NWB7 429 aa16.5■□□□□ 0.23
HDAC4-214ENST00000535493 AEBP1Q8IUX7 1158 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 MEIS3Q99687 375 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 FAM135BQ49AJ0 1406 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 SOX12O15370 315 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 BRPF1P55201 1214 aaPredicted RBP16.49■□□□□ 0.23
HDAC4-214ENST00000535493 MCM10Q7L590 875 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 TMEM63CQ9P1W3 806 aa16.49■□□□□ 0.23
HDAC4-214ENST00000535493 ZNF853P0CG23 659 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 IL13P35225 146 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 CFAP44Q96MT7 982 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 LMTK2Q8IWU2 1503 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.48■□□□□ 0.23
HDAC4-214ENST00000535493 STAG3Q9UJ98 1225 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 PTCH1Q13635 1447 aa16.48■□□□□ 0.23
HDAC4-214ENST00000535493 YTHDC2Q9H6S0 1430 aaKnown RBP16.48■□□□□ 0.23
HDAC4-214ENST00000535493 CYP2E1P05181 493 aaPredicted RBP16.47■□□□□ 0.23
HDAC4-214ENST00000535493 PTMSP20962 102 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 NUCB2P80303 420 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 INTS3Q68E01 1043 aaKnown RBP16.47■□□□□ 0.23
HDAC4-214ENST00000535493 API5Q9BZZ5 524 aaKnown RBP16.47■□□□□ 0.23
HDAC4-214ENST00000535493 OFD1O75665 1012 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 SLC4A10Q6U841 1118 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 CLEC17AQ6ZS10 378 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 ZNF428Q96B54 188 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 NEXMIFQ5QGS0 1516 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 FRMPD1Q5SYB0 1578 aa16.47■□□□□ 0.23
HDAC4-214ENST00000535493 ZNF445P59923 1031 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms