RNA–Protein interactions for RNA: ENST00000532331.5

PTPRK-221, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPRK, Length 5,757 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-221ENST00000532331 ZMYM3Q14202 1370 aa13.7□□□□□ -0.22
PTPRK-221ENST00000532331 CHRNA2Q15822 529 aa13.69□□□□□ -0.22
PTPRK-221ENST00000532331 SRCIN1Q9C0H9 1055 aa13.69□□□□□ -0.22
PTPRK-221ENST00000532331 C19orf44Q9H6X5 657 aa13.69□□□□□ -0.22
PTPRK-221ENST00000532331 SLC3A2P08195 630 aaKnown RBP13.69□□□□□ -0.22
PTPRK-221ENST00000532331 NOC3LQ8WTT2 800 aaKnown RBP13.69□□□□□ -0.22
PTPRK-221ENST00000532331 CCDC43Q96MW1 224 aaKnown RBP13.69□□□□□ -0.22
PTPRK-221ENST00000532331 DNAJC2Q99543 621 aaKnown RBP13.68□□□□□ -0.22
PTPRK-221ENST00000532331 IGHMBP2P38935 993 aaKnown RBP13.68□□□□□ -0.22
PTPRK-221ENST00000532331 ACEP12821 1306 aa13.68□□□□□ -0.22
PTPRK-221ENST00000532331 FSD1Q9BTV5 496 aa13.68□□□□□ -0.22
PTPRK-221ENST00000532331 GNAI2P04899 355 aa13.68□□□□□ -0.22
PTPRK-221ENST00000532331 TRAPPC8Q9Y2L5 1435 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 CCT4P50991 539 aaKnown RBP13.67□□□□□ -0.22
PTPRK-221ENST00000532331 ZNF428Q96B54 188 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 AAMPQ13685 434 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 MCTP1Q6DN14 999 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 LRRC59Q96AG4 307 aaKnown RBP13.67□□□□□ -0.22
PTPRK-221ENST00000532331 NUP160Q12769 1436 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 TSR2Q969E8 191 aaKnown RBP13.67□□□□□ -0.22
PTPRK-221ENST00000532331 NFE2L2Q16236 605 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 MTMR7Q9Y216 660 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 NINLQ9Y2I6 1382 aa13.67□□□□□ -0.22
PTPRK-221ENST00000532331 ITSN2Q9NZM3 1697 aa13.66□□□□□ -0.22
PTPRK-221ENST00000532331 SKOR2Q2VWA4 1001 aaPredicted RBP13.66□□□□□ -0.22
PTPRK-221ENST00000532331 ANKRD24Q8TF21 1146 aa13.66□□□□□ -0.22
PTPRK-221ENST00000532331 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.66□□□□□ -0.22
PTPRK-221ENST00000532331 TPD52L1Q16890 204 aaPredicted RBP13.65□□□□□ -0.22
PTPRK-221ENST00000532331 CNTROBQ8N137 903 aa13.65□□□□□ -0.22
PTPRK-221ENST00000532331 DDX49Q9Y6V7 483 aaKnown RBP13.65□□□□□ -0.22
PTPRK-221ENST00000532331 IFNL2Q8IZJ0 200 aa13.65□□□□□ -0.22
PTPRK-221ENST00000532331 PANK1Q8TE04 598 aa13.65□□□□□ -0.22
PTPRK-221ENST00000532331 TPM3P06753 285 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 SART3Q15020 963 aaKnown RBP13.64□□□□□ -0.23
PTPRK-221ENST00000532331 TMOD2Q9NZR1 351 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 INTS3Q68E01 1043 aaKnown RBP13.64□□□□□ -0.23
PTPRK-221ENST00000532331 LNPKQ9C0E8 428 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 SIL1Q9H173 461 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 CTTNBP2Q8WZ74 1663 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 SLC4A3P48751 1232 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
PTPRK-221ENST00000532331 ATP10AO60312 1499 aa13.63□□□□□ -0.23
PTPRK-221ENST00000532331 RPGRQ92834 1020 aaKnown RBP13.63□□□□□ -0.23
PTPRK-221ENST00000532331 WDR63Q8IWG1 891 aa13.63□□□□□ -0.23
PTPRK-221ENST00000532331 TAF7Q15545 349 aaPredicted RBP13.63□□□□□ -0.23
PTPRK-221ENST00000532331 HSP90AB3PQ58FF7 597 aa13.63□□□□□ -0.23
PTPRK-221ENST00000532331 ZSCAN29Q8IWY8 852 aaPredicted RBP13.63□□□□□ -0.23
PTPRK-221ENST00000532331 TEX13AQ9BXU3 409 aaPredicted RBP13.63□□□□□ -0.23
PTPRK-221ENST00000532331 TTC21BQ7Z4L5 1316 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 CEP89Q96ST8 783 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 GOLGA6L19H0YKK7 550 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 PES1O00541 588 aaKnown RBP13.62□□□□□ -0.23
PTPRK-221ENST00000532331 ATP2B2Q01814 1243 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 FMNL2Q96PY5 1086 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 SCAF11Q99590 1463 aaKnown RBP13.62□□□□□ -0.23
PTPRK-221ENST00000532331 RFC4P35249 363 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 FOXD4L6Q3SYB3 417 aaPredicted RBP13.62□□□□□ -0.23
PTPRK-221ENST00000532331 FOXD4L3Q6VB84 417 aaPredicted RBP13.62□□□□□ -0.23
PTPRK-221ENST00000532331 MCM10Q7L590 875 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 CEP126Q9P2H0 1117 aa13.62□□□□□ -0.23
PTPRK-221ENST00000532331 NOB1Q9ULX3 412 aaKnown RBP13.62□□□□□ -0.23
PTPRK-221ENST00000532331 TTC21AQ8NDW8 1320 aa13.61□□□□□ -0.23
PTPRK-221ENST00000532331 SAFBQ15424 915 aaKnown RBP eCLIP13.61□□□□□ -0.23
PTPRK-221ENST00000532331 NBPF14Q5TI25 921 aa13.61□□□□□ -0.23
PTPRK-221ENST00000532331 BECN2A8MW95 431 aa13.61□□□□□ -0.23
PTPRK-221ENST00000532331 DDB1Q16531 1140 aa13.61□□□□□ -0.23
PTPRK-221ENST00000532331 CCDC47Q96A33 483 aaKnown RBP13.61□□□□□ -0.23
PTPRK-221ENST00000532331 CCDC85AQ96PX6 553 aaPredicted RBP13.61□□□□□ -0.23
PTPRK-221ENST00000532331 TSR1Q2NL82 804 aaKnown RBP13.61□□□□□ -0.23
PTPRK-221ENST00000532331 CEP170Q5SW79 1584 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 HIP1O00291 1037 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 MIS18AQ9NYP9 233 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 TPM2P07951 284 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 CT47B1P0C2W7 299 aaPredicted RBP13.6□□□□□ -0.23
PTPRK-221ENST00000532331 NACAP1Q9BZK3 213 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 ZNF219Q9P2Y4 722 aaPredicted RBP13.6□□□□□ -0.23
PTPRK-221ENST00000532331 A0A087WZG4 1122 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 WDHD1O75717 1129 aaPredicted RBP13.6□□□□□ -0.23
PTPRK-221ENST00000532331 ANKIB1Q9P2G1 1089 aa13.6□□□□□ -0.23
PTPRK-221ENST00000532331 BRMS1Q9HCU9 246 aa13.59□□□□□ -0.23
PTPRK-221ENST00000532331 TMPOP42166 694 aaKnown RBP13.59□□□□□ -0.23
PTPRK-221ENST00000532331 ZSCAN25Q6NSZ9 544 aa13.59□□□□□ -0.23
PTPRK-221ENST00000532331 CNKSR2Q8WXI2 1034 aa13.59□□□□□ -0.23
PTPRK-221ENST00000532331 PBRM1Q86U86 1689 aa13.59□□□□□ -0.23
PTPRK-221ENST00000532331 XBP1P17861 261 aa13.59□□□□□ -0.23
PTPRK-221ENST00000532331 LARP1Q6PKG0 1096 aaKnown RBP13.59□□□□□ -0.23
PTPRK-221ENST00000532331 ZCRB1Q8TBF4 217 aaKnown RBP13.59□□□□□ -0.23
PTPRK-221ENST00000532331 RRP12Q5JTH9 1297 aaKnown RBP13.59□□□□□ -0.23
PTPRK-221ENST00000532331 PAXIP1Q6ZW49 1069 aaPredicted RBP13.58□□□□□ -0.23
PTPRK-221ENST00000532331 DUSP27Q5VZP5 1158 aa13.58□□□□□ -0.24
PTPRK-221ENST00000532331 ACSBG1Q96GR2 724 aa13.58□□□□□ -0.24
PTPRK-221ENST00000532331 TRMT112Q9UI30 125 aaKnown RBP13.58□□□□□ -0.24
PTPRK-221ENST00000532331 TPM1P09493 284 aa13.58□□□□□ -0.24
PTPRK-221ENST00000532331 RAI14Q9P0K7 980 aa13.58□□□□□ -0.24
PTPRK-221ENST00000532331 KCNA6P17658 529 aa13.58□□□□□ -0.24
PTPRK-221ENST00000532331 CABLES1Q8TDN4 633 aa13.57□□□□□ -0.24
PTPRK-221ENST00000532331 SMARCC1Q92922 1105 aaPredicted RBP13.57□□□□□ -0.24
PTPRK-221ENST00000532331 TBX22Q9Y458 520 aa13.57□□□□□ -0.24
PTPRK-221ENST00000532331 C1orf115Q9H7X2 142 aa13.57□□□□□ -0.24
PTPRK-221ENST00000532331 CAVIN4Q5BKX8 364 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms