RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 IRX2Q9BZI1 471 aaPredicted RBP9.72□□□□□ -0.85
CD44-231ENST00000531110 PCDHB9Q9Y5E1 797 aa9.72□□□□□ -0.85
CD44-231ENST00000531110 TLL2Q9Y6L7 1015 aa9.72□□□□□ -0.85
CD44-231ENST00000531110 ALDH1A1P00352 501 aa9.71□□□□□ -0.86
CD44-231ENST00000531110 GRM5P41594 1212 aa9.71□□□□□ -0.86
CD44-231ENST00000531110 KCTD15Q96SI1 283 aaPredicted RBP9.71□□□□□ -0.86
CD44-231ENST00000531110 ALG2Q9H553 416 aa9.71□□□□□ -0.86
CD44-231ENST00000531110 GFRA3O60609 400 aa9.7□□□□□ -0.86
CD44-231ENST00000531110 DGAT1O75907 488 aa9.7□□□□□ -0.86
CD44-231ENST00000531110 SMPD1P17405 629 aa9.7□□□□□ -0.86
CD44-231ENST00000531110 RNF20Q5VTR2 975 aa9.7□□□□□ -0.86
CD44-231ENST00000531110 DHX9Q08211 1270 aaKnown RBP9.69□□□□□ -0.86
CD44-231ENST00000531110 SEMA3FQ13275 785 aa9.69□□□□□ -0.86
CD44-231ENST00000531110 WASF2Q9Y6W5 498 aa9.69□□□□□ -0.86
CD44-231ENST00000531110 AVPP01185 164 aa9.68□□□□□ -0.86
CD44-231ENST00000531110 CEP126Q9P2H0 1117 aa9.68□□□□□ -0.86
CD44-231ENST00000531110 J3QL48 77 aa9.67□□□□□ -0.86
CD44-231ENST00000531110 ARID5BQ14865 1188 aa9.67□□□□□ -0.86
CD44-231ENST00000531110 FSHRP23945 695 aa9.66□□□□□ -0.86
CD44-231ENST00000531110 NNTQ13423 1086 aa9.66□□□□□ -0.86
CD44-231ENST00000531110 INTS6LQ5JSJ4 861 aaKnown RBP9.66□□□□□ -0.86
CD44-231ENST00000531110 NFATC2IPQ8NCF5 419 aa9.66□□□□□ -0.86
CD44-231ENST00000531110 POM121CA8CG34 1229 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 SMCPP49901 116 aaPredicted RBP9.65□□□□□ -0.86
CD44-231ENST00000531110 CTC1Q2NKJ3 1217 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 CCDC116Q8IYX3 515 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 CRIPAKQ8N1N5 446 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 CHIC2Q9UKJ5 165 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 EMILIN1Q9Y6C2 1016 aa9.65□□□□□ -0.86
CD44-231ENST00000531110 PKDCCQ504Y2 493 aa9.64□□□□□ -0.87
CD44-231ENST00000531110 PHTF2Q8N3S3 785 aa9.64□□□□□ -0.87
CD44-231ENST00000531110 FAM187AA6NFU0 413 aa9.63□□□□□ -0.87
CD44-231ENST00000531110 GIGYF1O75420 1035 aaPredicted RBP9.63□□□□□ -0.87
CD44-231ENST00000531110 ADAMTS19Q8TE59 1207 aa9.63□□□□□ -0.87
CD44-231ENST00000531110 GLMNQ92990 594 aa9.63□□□□□ -0.87
CD44-231ENST00000531110 KLF16Q9BXK1 252 aaPredicted RBP9.63□□□□□ -0.87
CD44-231ENST00000531110 TIMELESSQ9UNS1 1208 aa9.63□□□□□ -0.87
CD44-231ENST00000531110 NR3C2P08235 984 aa9.62□□□□□ -0.87
CD44-231ENST00000531110 SLFNL1Q499Z3 407 aa9.62□□□□□ -0.87
CD44-231ENST00000531110 HDGFL1Q5TGJ6 251 aa9.62□□□□□ -0.87
CD44-231ENST00000531110 PGPEP1Q9NXJ5 209 aa9.62□□□□□ -0.87
CD44-231ENST00000531110 LZTS3O60299 673 aaPredicted RBP9.61□□□□□ -0.87
CD44-231ENST00000531110 MAP7D1Q3KQU3 841 aa9.61□□□□□ -0.87
CD44-231ENST00000531110 PPP1R26Q5T8A7 1209 aaPredicted RBP9.6□□□□□ -0.87
CD44-231ENST00000531110 RNF135Q8IUD6 432 aa9.6□□□□□ -0.87
CD44-231ENST00000531110 HPS1Q92902 700 aa9.6□□□□□ -0.87
CD44-231ENST00000531110 CALR3Q96L12 384 aaKnown RBP9.6□□□□□ -0.87
CD44-231ENST00000531110 TIMP2P16035 220 aa9.59□□□□□ -0.87
CD44-231ENST00000531110 ERVH48-1M5A8F1 160 aa9.58□□□□□ -0.88
CD44-231ENST00000531110 WDR4P57081 412 aaKnown RBP9.57□□□□□ -0.88
CD44-231ENST00000531110 ZNF777Q9ULD5 760 aaPredicted RBP9.57□□□□□ -0.88
CD44-231ENST00000531110 ERVK-9P63128 1117 aa9.56□□□□□ -0.88
CD44-231ENST00000531110 TRAF7Q6Q0C0 670 aa9.56□□□□□ -0.88
CD44-231ENST00000531110 SIRT1Q96EB6 747 aa9.56□□□□□ -0.88
CD44-231ENST00000531110 CCDC85AQ96PX6 553 aaPredicted RBP9.56□□□□□ -0.88
CD44-231ENST00000531110 UCN2Q96RP3 112 aa9.56□□□□□ -0.88
CD44-231ENST00000531110 ZIC2O95409 532 aaPredicted RBP9.55□□□□□ -0.88
CD44-231ENST00000531110 Q6ZVU0 165 aa9.55□□□□□ -0.88
CD44-231ENST00000531110 PLEKHM2Q8IWE5 1019 aa9.55□□□□□ -0.88
CD44-231ENST00000531110 PLPP7Q8NBV4 271 aa9.55□□□□□ -0.88
CD44-231ENST00000531110 ITPKCQ96DU7 683 aa9.55□□□□□ -0.88
CD44-231ENST00000531110 DOLKQ9UPQ8 538 aa9.55□□□□□ -0.88
CD44-231ENST00000531110 CAPN5O15484 640 aaPredicted RBP9.54□□□□□ -0.88
CD44-231ENST00000531110 ATP9BO43861 1147 aa9.54□□□□□ -0.88
CD44-231ENST00000531110 ZNF784Q8NCA9 323 aaPredicted RBP9.54□□□□□ -0.88
CD44-231ENST00000531110 PCDHB11Q9Y5F2 797 aa9.54□□□□□ -0.88
CD44-231ENST00000531110 AXIN1O15169 862 aa9.53□□□□□ -0.88
CD44-231ENST00000531110 LILRA1O75019 489 aa9.53□□□□□ -0.88
CD44-231ENST00000531110 CC2D2BQ6DHV5 1058 aa9.53□□□□□ -0.88
CD44-231ENST00000531110 MEIOBQ8N635 442 aa9.53□□□□□ -0.88
CD44-231ENST00000531110 PIK3CDO00329 1044 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 RAB15P59190 212 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 USP4Q13107 963 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 Q6ZNB5 142 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 PPP1R12CQ9BZL4 782 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 AAASQ9NRG9 546 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 SERPINA10Q9UK55 444 aa9.52□□□□□ -0.89
CD44-231ENST00000531110 USP17L5A8MUK1 530 aa9.51□□□□□ -0.89
CD44-231ENST00000531110 MYCP01106 439 aaPredicted RBP9.51□□□□□ -0.89
CD44-231ENST00000531110 SKIP12755 728 aa9.51□□□□□ -0.89
CD44-231ENST00000531110 ZFAND3Q9H8U3 227 aa9.51□□□□□ -0.89
CD44-231ENST00000531110 TMPRSS4Q9NRS4 437 aa9.51□□□□□ -0.89
CD44-231ENST00000531110 EML3Q32P44 896 aa9.5□□□□□ -0.89
CD44-231ENST00000531110 TBC1D9Q6ZT07 1266 aa9.5□□□□□ -0.89
CD44-231ENST00000531110 PALM3A6NDB9 673 aaPredicted RBP9.49□□□□□ -0.89
CD44-231ENST00000531110 ADH1AP07327 375 aa9.49□□□□□ -0.89
CD44-231ENST00000531110 CYP2U1Q7Z449 544 aa9.49□□□□□ -0.89
CD44-231ENST00000531110 TSEN34Q9BSV6 310 aaKnown RBP9.49□□□□□ -0.89
CD44-231ENST00000531110 MAFBQ9Y5Q3 323 aaPredicted RBP9.49□□□□□ -0.89
CD44-231ENST00000531110 USP17L3A6NCW0 530 aa9.48□□□□□ -0.89
CD44-231ENST00000531110 USP17L4A6NCW7 530 aa9.48□□□□□ -0.89
CD44-231ENST00000531110 USP17L2Q6R6M4 530 aa9.48□□□□□ -0.89
CD44-231ENST00000531110 USP17L1Q7RTZ2 530 aa9.48□□□□□ -0.89
CD44-231ENST00000531110 CCDC97Q96F63 343 aaPredicted RBP9.48□□□□□ -0.89
CD44-231ENST00000531110 CDCA7Q9BWT1 371 aaPredicted RBP9.48□□□□□ -0.89
CD44-231ENST00000531110 ESF1Q9H501 851 aaKnown RBP9.48□□□□□ -0.89
CD44-231ENST00000531110 CYLDQ9NQC7 956 aa9.48□□□□□ -0.89
CD44-231ENST00000531110 TFIP11Q9UBB9 837 aaKnown RBP9.48□□□□□ -0.89
CD44-231ENST00000531110 SCTRP47872 440 aa9.47□□□□□ -0.89
CD44-231ENST00000531110 TSGA10IPQ3SY00 556 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms