RNA–Protein interactions for RNA: ENST00000528999.5

PUF60-213, Transcript of poly(U) binding splicing factor 60, human

TSL 3

Gene PUF60, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUF60-213	ENST00000528999	ANKAR	Q7Z5J8	1434 aa		13.65	□□□□□ -0.22
PUF60-213	ENST00000528999	TRH	P20396	242 aa	Predicted RBP	13.65	□□□□□ -0.22
PUF60-213	ENST00000528999	CEBPA	P49715	358 aa	Predicted RBP	13.65	□□□□□ -0.22
PUF60-213	ENST00000528999	HDAC1	Q13547	482 aa	Predicted RBP	13.65	□□□□□ -0.22
PUF60-213	ENST00000528999	TSR2	Q969E8	191 aa	Known RBP	13.65	□□□□□ -0.22
PUF60-213	ENST00000528999	OVOS2	A0A0J9YW53	1432 aa		13.64	□□□□□ -0.23
PUF60-213	ENST00000528999	OVOS2	Q6IE36	1432 aa		13.64	□□□□□ -0.23
PUF60-213	ENST00000528999	KIF24	Q5T7B8	1368 aa		13.64	□□□□□ -0.23
PUF60-213	ENST00000528999	RLBP1	P12271	317 aa		13.64	□□□□□ -0.23
PUF60-213	ENST00000528999	CFAP44	Q96MT7	982 aa		13.64	□□□□□ -0.23
PUF60-213	ENST00000528999	C8orf34	Q49A92	452 aa		13.63	□□□□□ -0.23
PUF60-213	ENST00000528999	PHACTR3	Q96KR7	559 aa		13.63	□□□□□ -0.23
PUF60-213	ENST00000528999	SLC26A8	Q96RN1	970 aa		13.63	□□□□□ -0.23
PUF60-213	ENST00000528999	PCDHB15	Q9Y5E8	787 aa		13.63	□□□□□ -0.23
PUF60-213	ENST00000528999	NRK	Q7Z2Y5	1582 aa		13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	VAMP4	O75379	141 aa		13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	TRIM27	P14373	513 aa		13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	ZRANB1	Q9UGI0	708 aa		13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	NOB1	Q9ULX3	412 aa	Known RBP	13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	FER1L4	A9Z1Z3	1794 aa		13.62	□□□□□ -0.23
PUF60-213	ENST00000528999	HMOX1	P09601	288 aa		13.61	□□□□□ -0.23
PUF60-213	ENST00000528999	NCKAP5L	Q9HCH0	1330 aa		13.61	□□□□□ -0.23
PUF60-213	ENST00000528999	EIF4A2	Q14240	407 aa	Known RBP	13.6	□□□□□ -0.23
PUF60-213	ENST00000528999	PLPPR3	Q6T4P5	718 aa		13.6	□□□□□ -0.23
PUF60-213	ENST00000528999	BCL2L13	Q9BXK5	485 aa		13.6	□□□□□ -0.23
PUF60-213	ENST00000528999	ZBTB40	Q9NUA8	1239 aa		13.6	□□□□□ -0.23
PUF60-213	ENST00000528999	FBLN1	P23142	703 aa		13.59	□□□□□ -0.23
PUF60-213	ENST00000528999	RRS1	Q15050	365 aa	Known RBP	13.59	□□□□□ -0.23
PUF60-213	ENST00000528999	ANKLE2	Q86XL3	938 aa		13.59	□□□□□ -0.23
PUF60-213	ENST00000528999	MRPL50	Q8N5N7	158 aa	Known RBP	13.59	□□□□□ -0.23
PUF60-213	ENST00000528999	ARHGEF10	O15013	1369 aa		13.58	□□□□□ -0.23
PUF60-213	ENST00000528999	HTATSF1	O43719	755 aa	Known RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	PAK3	O75914	559 aa	Predicted RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	RGS3	P49796	1198 aa		13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	NGDN	Q8NEJ9	315 aa	Known RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	API5	Q9BZZ5	524 aa	Known RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	RIMS1	Q86UR5	1692 aa	Known RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	NALCN	Q8IZF0	1738 aa		13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	XRN1	Q8IZH2	1706 aa	Known RBP	13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	SBNO1	A3KN83	1393 aa		13.58	□□□□□ -0.24
PUF60-213	ENST00000528999	NPM2	Q86SE8	214 aa	Known RBP	13.57	□□□□□ -0.24
PUF60-213	ENST00000528999	SMC5	Q8IY18	1101 aa		13.57	□□□□□ -0.24
PUF60-213	ENST00000528999	MBIP	Q9NS73	344 aa		13.57	□□□□□ -0.24
PUF60-213	ENST00000528999	PDZRN3	Q9UPQ7	1066 aa		13.57	□□□□□ -0.24
PUF60-213	ENST00000528999	KIAA0232	Q92628	1395 aa		13.57	□□□□□ -0.24
PUF60-213	ENST00000528999	CHL1	O00533	1208 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	SULT6B1	Q6IMI4	303 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	ITPRIP	Q8IWB1	547 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	USP35	Q9P2H5	1018 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	TNN	Q9UQP3	1299 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	FLT4	P35916	1363 aa		13.56	□□□□□ -0.24
PUF60-213	ENST00000528999	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	13.55	□□□□□ -0.24
PUF60-213	ENST00000528999	TWISTNB	Q3B726	338 aa	Predicted RBP	13.55	□□□□□ -0.24
PUF60-213	ENST00000528999	TMEM57	Q8N5G2	664 aa		13.55	□□□□□ -0.24
PUF60-213	ENST00000528999	DAXX	Q9UER7	740 aa	Predicted RBP	13.55	□□□□□ -0.24
PUF60-213	ENST00000528999	LAS1L	Q9Y4W2	734 aa	Known RBP	13.55	□□□□□ -0.24
PUF60-213	ENST00000528999	ZBTB7B	O15156	539 aa	Predicted RBP	13.54	□□□□□ -0.24
PUF60-213	ENST00000528999	SKAP1	Q86WV1	359 aa		13.54	□□□□□ -0.24
PUF60-213	ENST00000528999	BABAM1	Q9NWV8	329 aa		13.54	□□□□□ -0.24
PUF60-213	ENST00000528999	SOS1	Q07889	1333 aa	Predicted RBP	13.54	□□□□□ -0.24
PUF60-213	ENST00000528999	KDR	P35968	1356 aa		13.54	□□□□□ -0.24
PUF60-213	ENST00000528999	KCNA6	P17658	529 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	HSP90AB2P	Q58FF8	381 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	GAS2L2	Q8NHY3	880 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	GCC1	Q96CN9	775 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	UPF2	Q9HAU5	1272 aa	Known RBP	13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	MAP3K19	Q56UN5	1328 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	RGPD1	P0DJD0	1748 aa		13.53	□□□□□ -0.24
PUF60-213	ENST00000528999	EIF5B	O60841	1220 aa	Known RBP	13.52	□□□□□ -0.25
PUF60-213	ENST00000528999	ABCC4	O15439	1325 aa		13.52	□□□□□ -0.25
PUF60-213	ENST00000528999	USP54	Q70EL1	1684 aa		13.52	□□□□□ -0.25
PUF60-213	ENST00000528999	IGSF1	Q8N6C5	1336 aa		13.51	□□□□□ -0.25
PUF60-213	ENST00000528999	AMPH	P49418	695 aa		13.51	□□□□□ -0.25
PUF60-213	ENST00000528999	C8orf58	Q8NAV2	365 aa		13.51	□□□□□ -0.25
PUF60-213	ENST00000528999	PTPRC	P08575	1304 aa		13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	NLRP6	P59044	892 aa		13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	NUCB1	Q02818	461 aa		13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	INTS3	Q68E01	1043 aa	Known RBP	13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	TSPYL6	Q8N831	410 aa		13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	THUMPD2	Q9BTF0	503 aa	Known RBP	13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	FMN2	Q9NZ56	1722 aa		13.5	□□□□□ -0.25
PUF60-213	ENST00000528999	RTL1	A6NKG5	1358 aa		13.49	□□□□□ -0.25
PUF60-213	ENST00000528999	NUTM2F	A1L443	756 aa		13.49	□□□□□ -0.25
PUF60-213	ENST00000528999	RTF1	Q92541	710 aa	Known RBP	13.49	□□□□□ -0.25
PUF60-213	ENST00000528999	PHF8	Q9UPP1	1060 aa		13.49	□□□□□ -0.25
PUF60-213	ENST00000528999	ZNF142	P52746	1687 aa	Predicted RBP	13.49	□□□□□ -0.25
PUF60-213	ENST00000528999	CRB1	P82279	1406 aa		13.48	□□□□□ -0.25
PUF60-213	ENST00000528999	PEAK1	Q9H792	1746 aa		13.48	□□□□□ -0.25
PUF60-213	ENST00000528999	BECN1	Q14457	450 aa		13.48	□□□□□ -0.25
PUF60-213	ENST00000528999	AEBP1	Q8IUX7	1158 aa		13.48	□□□□□ -0.25
PUF60-213	ENST00000528999	CHMP4A	Q9BY43	222 aa		13.48	□□□□□ -0.25
PUF60-213	ENST00000528999	EYA1	Q99502	592 aa		13.47	□□□□□ -0.25
PUF60-213	ENST00000528999	SETD1B	Q9UPS6	1966 aa	Known RBP	13.47	□□□□□ -0.25
PUF60-213	ENST00000528999	ADAMTSL3	P82987	1691 aa		13.47	□□□□□ -0.25
PUF60-213	ENST00000528999	DLG5	Q8TDM6	1919 aa		13.47	□□□□□ -0.25
PUF60-213	ENST00000528999	CHD2	O14647	1828 aa	Known RBP	13.46	□□□□□ -0.25
PUF60-213	ENST00000528999	VIRMA	Q69YN4	1812 aa	Known RBP	13.46	□□□□□ -0.25
PUF60-213	ENST00000528999	USP19	O94966	1318 aa		13.46	□□□□□ -0.25
PUF60-213	ENST00000528999	FAM83G	A6ND36	823 aa		13.46	□□□□□ -0.25
PUF60-213	ENST00000528999	HOXC9	P31274	260 aa		13.46	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms