RNA–Protein interactions for RNA: ENST00000528402.5

ECHDC1-220, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

TSL 1 (best) BASIC

Gene ECHDC1, Length 1,449 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-220ENST00000528402 FLT4P35916 1363 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 EXOSC9Q06265 439 aaKnown RBP19■□□□□ 0.63
ECHDC1-220ENST00000528402 ZKSCAN2Q63HK3 967 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 PHACTR3Q96KR7 559 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 PHF8Q9UPP1 1060 aa19■□□□□ 0.63
ECHDC1-220ENST00000528402 KDM2BQ8NHM5 1336 aa18.99■□□□□ 0.63
ECHDC1-220ENST00000528402 NWD1Q149M9 1564 aa18.98■□□□□ 0.63
ECHDC1-220ENST00000528402 ARHGEF10O15013 1369 aa18.98■□□□□ 0.63
ECHDC1-220ENST00000528402 IPO8O15397 1037 aaKnown RBP18.98■□□□□ 0.63
ECHDC1-220ENST00000528402 BRPF1P55201 1214 aaPredicted RBP18.98■□□□□ 0.63
ECHDC1-220ENST00000528402 NLRP6P59044 892 aa18.97■□□□□ 0.63
ECHDC1-220ENST00000528402 FRAT1Q92837 279 aaPredicted RBP18.97■□□□□ 0.63
ECHDC1-220ENST00000528402 PIK3C2AO00443 1686 aa18.97■□□□□ 0.63
ECHDC1-220ENST00000528402 RGPD1P0DJD0 1748 aa18.96■□□□□ 0.63
ECHDC1-220ENST00000528402 ZNF853P0CG23 659 aa18.96■□□□□ 0.63
ECHDC1-220ENST00000528402 HAP1P54257 671 aaPredicted RBP18.96■□□□□ 0.63
ECHDC1-220ENST00000528402 TSR2Q969E8 191 aaKnown RBP18.96■□□□□ 0.63
ECHDC1-220ENST00000528402 MAP3K19Q56UN5 1328 aa18.96■□□□□ 0.63
ECHDC1-220ENST00000528402 DLG5Q8TDM6 1919 aa18.95■□□□□ 0.62
ECHDC1-220ENST00000528402 AMPHP49418 695 aa18.95■□□□□ 0.62
ECHDC1-220ENST00000528402 SULT6B1Q6IMI4 303 aa18.95■□□□□ 0.62
ECHDC1-220ENST00000528402 CLUAP1Q96AJ1 413 aa18.95■□□□□ 0.62
ECHDC1-220ENST00000528402 PEAK1Q9H792 1746 aa18.95■□□□□ 0.62
ECHDC1-220ENST00000528402 CFAP44Q96MT7 982 aa18.94■□□□□ 0.62
ECHDC1-220ENST00000528402 KIF16BQ96L93 1317 aa18.94■□□□□ 0.62
ECHDC1-220ENST00000528402 HSP90AB2PQ58FF8 381 aa18.93■□□□□ 0.62
ECHDC1-220ENST00000528402 ABTB2Q8N961 1025 aa18.93■□□□□ 0.62
ECHDC1-220ENST00000528402 SMC4Q9NTJ3 1288 aa18.93■□□□□ 0.62
ECHDC1-220ENST00000528402 RTL1A6NKG5 1358 aa18.92■□□□□ 0.62
ECHDC1-220ENST00000528402 DZIP1LQ8IYY4 767 aaKnown RBP18.92■□□□□ 0.62
ECHDC1-220ENST00000528402 COG6Q9Y2V7 657 aa18.92■□□□□ 0.62
ECHDC1-220ENST00000528402 NCOA3Q9Y6Q9 1424 aa18.92■□□□□ 0.62
ECHDC1-220ENST00000528402 PANK1Q8TE04 598 aa18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 PSME1Q06323 249 aa18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 MVPQ14764 893 aaKnown RBP18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 FTSJ3Q8IY81 847 aaKnown RBP18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 KCNH5Q8NCM2 988 aa18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 SSH1Q8WYL5 1049 aa18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 ARHGAP45Q92619 1136 aa18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 CHMP4BQ9H444 224 aaKnown RBP18.91■□□□□ 0.62
ECHDC1-220ENST00000528402 KDRP35968 1356 aa18.9■□□□□ 0.62
ECHDC1-220ENST00000528402 ATF7IPQ6VMQ6 1270 aa18.9■□□□□ 0.62
ECHDC1-220ENST00000528402 C14orf37Q86TY3 774 aa18.9■□□□□ 0.62
ECHDC1-220ENST00000528402 IGSF1Q8N6C5 1336 aa18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 HTATSF1O43719 755 aaKnown RBP18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 PAK3O75914 559 aaPredicted RBP18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 ESCO1Q5FWF5 840 aa18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 PROSER2Q86WR7 435 aaPredicted RBP18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 MARF1Q9Y4F3 1742 aaKnown RBP18.89■□□□□ 0.61
ECHDC1-220ENST00000528402 GAS2L2Q8NHY3 880 aa18.88■□□□□ 0.61
ECHDC1-220ENST00000528402 C19orf44Q9H6X5 657 aa18.88■□□□□ 0.61
ECHDC1-220ENST00000528402 DDX19BQ9UMR2 479 aa18.88■□□□□ 0.61
ECHDC1-220ENST00000528402 LAS1LQ9Y4W2 734 aaKnown RBP18.88■□□□□ 0.61
ECHDC1-220ENST00000528402 VAMP4O75379 141 aa18.87■□□□□ 0.61
ECHDC1-220ENST00000528402 HOXC9P31274 260 aa18.87■□□□□ 0.61
ECHDC1-220ENST00000528402 BCL2L13Q9BXK5 485 aa18.87■□□□□ 0.61
ECHDC1-220ENST00000528402 RWDD1Q9H446 243 aaPredicted RBP18.87■□□□□ 0.61
ECHDC1-220ENST00000528402 MBIPQ9NS73 344 aa18.86■□□□□ 0.61
ECHDC1-220ENST00000528402 AEBP1Q8IUX7 1158 aa18.85■□□□□ 0.61
ECHDC1-220ENST00000528402 NOB1Q9ULX3 412 aaKnown RBP18.85■□□□□ 0.61
ECHDC1-220ENST00000528402 KIF1AQ12756 1690 aa18.85■□□□□ 0.61
ECHDC1-220ENST00000528402 SOX12O15370 315 aa18.84■□□□□ 0.61
ECHDC1-220ENST00000528402 RLBP1P12271 317 aa18.84■□□□□ 0.61
ECHDC1-220ENST00000528402 PDE4AP27815 886 aa18.84■□□□□ 0.61
ECHDC1-220ENST00000528402 EYA1Q99502 592 aa18.84■□□□□ 0.61
ECHDC1-220ENST00000528402 CHL1O00533 1208 aa18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 TRIM27P14373 513 aa18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 RTF1Q92541 710 aaKnown RBP18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 IP6K1Q92551 441 aa18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 BACH2Q9BYV9 841 aa18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 KIAA0232Q92628 1395 aa18.83■□□□□ 0.61
ECHDC1-220ENST00000528402 DCCP43146 1447 aa18.83■□□□□ 0.6
ECHDC1-220ENST00000528402 TWISTNBQ3B726 338 aaPredicted RBP18.83■□□□□ 0.6
ECHDC1-220ENST00000528402 PHRF1Q9P1Y6 1649 aaKnown RBP18.82■□□□□ 0.6
ECHDC1-220ENST00000528402 MRPL50Q8N5N7 158 aaKnown RBP18.82■□□□□ 0.6
ECHDC1-220ENST00000528402 THUMPD2Q9BTF0 503 aaKnown RBP18.82■□□□□ 0.6
ECHDC1-220ENST00000528402 MST1RQ04912 1400 aa18.81■□□□□ 0.6
ECHDC1-220ENST00000528402 BABAM1Q9NWV8 329 aa18.81■□□□□ 0.6
ECHDC1-220ENST00000528402 IGHDP01880 384 aa18.8■□□□□ 0.6
ECHDC1-220ENST00000528402 LTN1O94822 1766 aa18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 NFAT5O94916 1531 aa18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 FAM83GA6ND36 823 aa18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 ANP32AP39687 249 aaKnown RBP18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 API5Q9BZZ5 524 aaKnown RBP18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 C1orf167Q5SNV9 1468 aa18.79■□□□□ 0.6
ECHDC1-220ENST00000528402 ATF3P18847 181 aa18.78■□□□□ 0.6
ECHDC1-220ENST00000528402 MTHFSDQ2M296 383 aaKnown RBP18.78■□□□□ 0.6
ECHDC1-220ENST00000528402 NUTM2GQ5VZR2 741 aa18.78■□□□□ 0.6
ECHDC1-220ENST00000528402 SOS1Q07889 1333 aaPredicted RBP18.78■□□□□ 0.6
ECHDC1-220ENST00000528402 CRB1P82279 1406 aa18.77■□□□□ 0.6
ECHDC1-220ENST00000528402 HDAC1Q13547 482 aaPredicted RBP18.77■□□□□ 0.6
ECHDC1-220ENST00000528402 RBM33Q96EV2 1170 aaKnown RBP18.77■□□□□ 0.6
ECHDC1-220ENST00000528402 PCDHB15Q9Y5E8 787 aa18.77■□□□□ 0.6
ECHDC1-220ENST00000528402 SLIT3O75094 1523 aa18.77■□□□□ 0.6
ECHDC1-220ENST00000528402 ITPRIPQ8IWB1 547 aa18.76■□□□□ 0.59
ECHDC1-220ENST00000528402 ORAI2Q96SN7 254 aa18.76■□□□□ 0.59
ECHDC1-220ENST00000528402 TNNQ9UQP3 1299 aa18.76■□□□□ 0.59
ECHDC1-220ENST00000528402 GNAT3A8MTJ3 354 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 FOXO3O43524 673 aa18.75■□□□□ 0.59
ECHDC1-220ENST00000528402 DCTN1Q14203 1278 aa18.75■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms