RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ORAI2Q96SN7 254 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 CRBNQ96SW2 442 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 TSHZ2Q9NRE2 1034 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 USP54Q70EL1 1684 aa26.93■■□□□ 1.9
VPS28-209ENST00000528142 SOX12O15370 315 aa26.92■■□□□ 1.9
VPS28-209ENST00000528142 SBNO1A3KN83 1393 aa26.92■■□□□ 1.9
VPS28-209ENST00000528142 C1orf167Q5SNV9 1468 aa26.92■■□□□ 1.9
VPS28-209ENST00000528142 ABTB2Q8N961 1025 aa26.91■■□□□ 1.9
VPS28-209ENST00000528142 MST1RQ04912 1400 aa26.91■■□□□ 1.9
VPS28-209ENST00000528142 DCCP43146 1447 aa26.9■■□□□ 1.9
VPS28-209ENST00000528142 MARF1Q9Y4F3 1742 aaKnown RBP26.9■■□□□ 1.9
VPS28-209ENST00000528142 FLT4P35916 1363 aa26.9■■□□□ 1.9
VPS28-209ENST00000528142 FANCIQ9NVI1 1328 aa26.89■■□□□ 1.9
VPS28-209ENST00000528142 PAK3O75914 559 aaPredicted RBP26.88■■□□□ 1.89
VPS28-209ENST00000528142 RARSP54136 660 aaKnown RBP26.88■■□□□ 1.89
VPS28-209ENST00000528142 NUTM2GQ5VZR2 741 aa26.88■■□□□ 1.89
VPS28-209ENST00000528142 PSME1Q06323 249 aa26.86■■□□□ 1.89
VPS28-209ENST00000528142 TSR2Q969E8 191 aaKnown RBP26.86■■□□□ 1.89
VPS28-209ENST00000528142 KIF24Q5T7B8 1368 aa26.86■■□□□ 1.89
VPS28-209ENST00000528142 RGPD1P0DJD0 1748 aa26.86■■□□□ 1.89
VPS28-209ENST00000528142 SULT6B1Q6IMI4 303 aa26.86■■□□□ 1.89
VPS28-209ENST00000528142 AEBP1Q8IUX7 1158 aa26.86■■□□□ 1.89
VPS28-209ENST00000528142 CT47B1P0C2W7 299 aaPredicted RBP26.85■■□□□ 1.89
VPS28-209ENST00000528142 ATF3P18847 181 aa26.85■■□□□ 1.89
VPS28-209ENST00000528142 MSH6P52701 1360 aa26.85■■□□□ 1.89
VPS28-209ENST00000528142 AMPHP49418 695 aa26.84■■□□□ 1.89
VPS28-209ENST00000528142 ARHGEF10O15013 1369 aa26.83■■□□□ 1.88
VPS28-209ENST00000528142 LTBP4Q8N2S1 1624 aa26.82■■□□□ 1.88
VPS28-209ENST00000528142 EXOSC9Q06265 439 aaKnown RBP26.81■■□□□ 1.88
VPS28-209ENST00000528142 CADPS2Q86UW7 1296 aa26.81■■□□□ 1.88
VPS28-209ENST00000528142 FOXO3O43524 673 aa26.8■■□□□ 1.88
VPS28-209ENST00000528142 HOXC9P31274 260 aa26.79■■□□□ 1.88
VPS28-209ENST00000528142 LMOD3Q0VAK6 560 aa26.79■■□□□ 1.88
VPS28-209ENST00000528142 PDE3AQ14432 1141 aa26.79■■□□□ 1.88
VPS28-209ENST00000528142 CALD1Q05682 793 aaKnown RBP26.79■■□□□ 1.88
VPS28-209ENST00000528142 XPCQ01831 940 aaPredicted RBP26.77■■□□□ 1.88
VPS28-209ENST00000528142 THUMPD2Q9BTF0 503 aaKnown RBP26.77■■□□□ 1.88
VPS28-209ENST00000528142 KIF1AQ12756 1690 aa26.77■■□□□ 1.88
VPS28-209ENST00000528142 IGSF1Q8N6C5 1336 aa26.77■■□□□ 1.88
VPS28-209ENST00000528142 KDRP35968 1356 aa26.77■■□□□ 1.88
VPS28-209ENST00000528142 DDX17Q92841 729 aaKnown RBP26.76■■□□□ 1.88
VPS28-209ENST00000528142 EYA1Q99502 592 aa26.76■■□□□ 1.87
VPS28-209ENST00000528142 RTL1A6NKG5 1358 aa26.76■■□□□ 1.87
VPS28-209ENST00000528142 NFAT5O94916 1531 aa26.75■■□□□ 1.87
VPS28-209ENST00000528142 ZNF853P0CG23 659 aa26.75■■□□□ 1.87
VPS28-209ENST00000528142 IFT57Q9NWB7 429 aa26.74■■□□□ 1.87
VPS28-209ENST00000528142 TRPM3Q9HCF6 1732 aaPredicted RBP26.74■■□□□ 1.87
VPS28-209ENST00000528142 KCNH5Q8NCM2 988 aa26.72■■□□□ 1.87
VPS28-209ENST00000528142 BCL2L13Q9BXK5 485 aa26.72■■□□□ 1.87
VPS28-209ENST00000528142 GNAI1P63096 354 aa26.72■■□□□ 1.87
VPS28-209ENST00000528142 KRT28Q7Z3Y7 464 aa26.72■■□□□ 1.87
VPS28-209ENST00000528142 FRAT1Q92837 279 aaPredicted RBP26.72■■□□□ 1.87
VPS28-209ENST00000528142 FAM83GA6ND36 823 aa26.71■■□□□ 1.87
VPS28-209ENST00000528142 CANXP27824 592 aaKnown RBP26.71■■□□□ 1.87
VPS28-209ENST00000528142 BRINP3Q76B58 766 aa26.7■■□□□ 1.87
VPS28-209ENST00000528142 IP6K1Q92551 441 aa26.7■■□□□ 1.87
VPS28-209ENST00000528142 SLAIN2Q9P270 581 aa26.7■■□□□ 1.87
VPS28-209ENST00000528142 DLG5Q8TDM6 1919 aa26.7■■□□□ 1.86
VPS28-209ENST00000528142 CFAP44Q96MT7 982 aa26.69■■□□□ 1.86
VPS28-209ENST00000528142 PANK1Q8TE04 598 aa26.69■■□□□ 1.86
VPS28-209ENST00000528142 LAS1LQ9Y4W2 734 aaKnown RBP26.69■■□□□ 1.86
VPS28-209ENST00000528142 AEBP2Q6ZN18 517 aaPredicted RBP26.68■■□□□ 1.86
VPS28-209ENST00000528142 SSH1Q8WYL5 1049 aa26.68■■□□□ 1.86
VPS28-209ENST00000528142 SLIT3O75094 1523 aa26.68■■□□□ 1.86
VPS28-209ENST00000528142 DCTN1Q14203 1278 aa26.67■■□□□ 1.86
VPS28-209ENST00000528142 MBIPQ9NS73 344 aa26.67■■□□□ 1.86
VPS28-209ENST00000528142 USP19O94966 1318 aa26.67■■□□□ 1.86
VPS28-209ENST00000528142 GCP02774 474 aa26.65■■□□□ 1.86
VPS28-209ENST00000528142 SMC4Q9NTJ3 1288 aa26.65■■□□□ 1.86
VPS28-209ENST00000528142 MTHFSDQ2M296 383 aaKnown RBP26.65■■□□□ 1.86
VPS28-209ENST00000528142 ZNF428Q96B54 188 aa26.65■■□□□ 1.86
VPS28-209ENST00000528142 TNNQ9UQP3 1299 aa26.65■■□□□ 1.86
VPS28-209ENST00000528142 PXDNQ92626 1479 aa26.64■■□□□ 1.86
VPS28-209ENST00000528142 KDM2BQ8NHM5 1336 aa26.64■■□□□ 1.86
VPS28-209ENST00000528142 RLBP1P12271 317 aa26.64■■□□□ 1.85
VPS28-209ENST00000528142 COG6Q9Y2V7 657 aa26.64■■□□□ 1.85
VPS28-209ENST00000528142 PHRF1Q9P1Y6 1649 aaKnown RBP26.63■■□□□ 1.85
VPS28-209ENST00000528142 LTN1O94822 1766 aa26.63■■□□□ 1.85
VPS28-209ENST00000528142 ALS2Q96Q42 1657 aa26.63■■□□□ 1.85
VPS28-209ENST00000528142 ALDH1L2Q3SY69 923 aa26.63■■□□□ 1.85
VPS28-209ENST00000528142 ZKSCAN2Q63HK3 967 aa26.63■■□□□ 1.85
VPS28-209ENST00000528142 ARHGEF25Q86VW2 580 aa26.62■■□□□ 1.85
VPS28-209ENST00000528142 LTV1Q96GA3 475 aaPredicted RBP26.62■■□□□ 1.85
VPS28-209ENST00000528142 VAMP4O75379 141 aa26.62■■□□□ 1.85
VPS28-209ENST00000528142 MCM10Q7L590 875 aa26.6■■□□□ 1.85
VPS28-209ENST00000528142 GAS2L2Q8NHY3 880 aa26.6■■□□□ 1.85
VPS28-209ENST00000528142 BRPF1P55201 1214 aaPredicted RBP26.6■■□□□ 1.85
VPS28-209ENST00000528142 LMOD2Q6P5Q4 547 aa26.6■■□□□ 1.85
VPS28-209ENST00000528142 TSPYL6Q8N831 410 aa26.6■■□□□ 1.85
VPS28-209ENST00000528142 CHL1O00533 1208 aa26.59■■□□□ 1.85
VPS28-209ENST00000528142 RBM19Q9Y4C8 960 aaKnown RBP26.59■■□□□ 1.85
VPS28-209ENST00000528142 NPHP3Q7Z494 1330 aa26.59■■□□□ 1.85
VPS28-209ENST00000528142 CRB1P82279 1406 aa26.59■■□□□ 1.85
VPS28-209ENST00000528142 AAMPQ13685 434 aa26.58■■□□□ 1.84
VPS28-209ENST00000528142 CENPQQ7L2Z9 268 aaPredicted RBP26.58■■□□□ 1.84
VPS28-209ENST00000528142 MS4A1P11836 297 aa26.57■■□□□ 1.84
VPS28-209ENST00000528142 CLUAP1Q96AJ1 413 aa26.57■■□□□ 1.84
VPS28-209ENST00000528142 NOB1Q9ULX3 412 aaKnown RBP26.57■■□□□ 1.84
VPS28-209ENST00000528142 TRIM27P14373 513 aa26.56■■□□□ 1.84
VPS28-209ENST00000528142 DZIP1LQ8IYY4 767 aaKnown RBP26.56■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms