RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 CALD1Q05682 793 aaKnown RBP20.51■□□□□ 0.87
USH1C-204ENST00000526313 USP54Q70EL1 1684 aa20.51■□□□□ 0.87
USH1C-204ENST00000526313 ZNF853P0CG23 659 aa20.51■□□□□ 0.87
USH1C-204ENST00000526313 PIK3C2AO00443 1686 aa20.51■□□□□ 0.87
USH1C-204ENST00000526313 BCL2L13Q9BXK5 485 aa20.5■□□□□ 0.87
USH1C-204ENST00000526313 DLG5Q8TDM6 1919 aa20.5■□□□□ 0.87
USH1C-204ENST00000526313 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
USH1C-204ENST00000526313 ZKSCAN2Q63HK3 967 aa20.49■□□□□ 0.87
USH1C-204ENST00000526313 ZNF428Q96B54 188 aa20.49■□□□□ 0.87
USH1C-204ENST00000526313 TNNQ9UQP3 1299 aa20.49■□□□□ 0.87
USH1C-204ENST00000526313 MSH5O43196 834 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 LMOD3Q0VAK6 560 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 BACH2Q9BYV9 841 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 IFT57Q9NWB7 429 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 PDE4AP27815 886 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 BRPF1P55201 1214 aaPredicted RBP20.48■□□□□ 0.87
USH1C-204ENST00000526313 ALDH1L2Q3SY69 923 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 HSP90AB2PQ58FF8 381 aa20.48■□□□□ 0.87
USH1C-204ENST00000526313 MAP3K19Q56UN5 1328 aa20.47■□□□□ 0.87
USH1C-204ENST00000526313 SBNO1A3KN83 1393 aa20.47■□□□□ 0.87
USH1C-204ENST00000526313 GNAI1P63096 354 aa20.47■□□□□ 0.87
USH1C-204ENST00000526313 NPHP4O75161 1426 aaPredicted RBP20.46■□□□□ 0.87
USH1C-204ENST00000526313 MARF1Q9Y4F3 1742 aaKnown RBP20.46■□□□□ 0.87
USH1C-204ENST00000526313 IGHDP01880 384 aa20.46■□□□□ 0.87
USH1C-204ENST00000526313 SMC4Q9NTJ3 1288 aa20.46■□□□□ 0.87
USH1C-204ENST00000526313 ADGRL3Q9HAR2 1447 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 SULT6B1Q6IMI4 303 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 SKAP1Q86WV1 359 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 AEBP1Q8IUX7 1158 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 DZIP1LQ8IYY4 767 aaKnown RBP20.45■□□□□ 0.86
USH1C-204ENST00000526313 FLT4P35916 1363 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 KIF24Q5T7B8 1368 aa20.45■□□□□ 0.86
USH1C-204ENST00000526313 MVPQ14764 893 aaKnown RBP20.44■□□□□ 0.86
USH1C-204ENST00000526313 ARHGEF10O15013 1369 aa20.44■□□□□ 0.86
USH1C-204ENST00000526313 CFAP44Q96MT7 982 aa20.44■□□□□ 0.86
USH1C-204ENST00000526313 THUMPD2Q9BTF0 503 aaKnown RBP20.43■□□□□ 0.86
USH1C-204ENST00000526313 TRIM27P14373 513 aa20.42■□□□□ 0.86
USH1C-204ENST00000526313 ATF7IPQ6VMQ6 1270 aa20.42■□□□□ 0.86
USH1C-204ENST00000526313 VAMP4O75379 141 aa20.42■□□□□ 0.86
USH1C-204ENST00000526313 PHF8Q9UPP1 1060 aa20.42■□□□□ 0.86
USH1C-204ENST00000526313 KDRP35968 1356 aa20.41■□□□□ 0.86
USH1C-204ENST00000526313 PCDHB15Q9Y5E8 787 aa20.41■□□□□ 0.86
USH1C-204ENST00000526313 KIF16BQ96L93 1317 aa20.41■□□□□ 0.86
USH1C-204ENST00000526313 NLRP6P59044 892 aa20.41■□□□□ 0.86
USH1C-204ENST00000526313 MBIPQ9NS73 344 aa20.41■□□□□ 0.86
USH1C-204ENST00000526313 NOB1Q9ULX3 412 aaKnown RBP20.41■□□□□ 0.86
USH1C-204ENST00000526313 NWD1Q149M9 1564 aa20.4■□□□□ 0.86
USH1C-204ENST00000526313 IPO8O15397 1037 aaKnown RBP20.39■□□□□ 0.85
USH1C-204ENST00000526313 FTSJ3Q8IY81 847 aaKnown RBP20.38■□□□□ 0.85
USH1C-204ENST00000526313 LAS1LQ9Y4W2 734 aaKnown RBP20.38■□□□□ 0.85
USH1C-204ENST00000526313 IGSF1Q8N6C5 1336 aa20.38■□□□□ 0.85
USH1C-204ENST00000526313 FAM83GA6ND36 823 aa20.38■□□□□ 0.85
USH1C-204ENST00000526313 SOX12O15370 315 aa20.37■□□□□ 0.85
USH1C-204ENST00000526313 DDX19BQ9UMR2 479 aa20.36■□□□□ 0.85
USH1C-204ENST00000526313 AMPHP49418 695 aa20.36■□□□□ 0.85
USH1C-204ENST00000526313 MRPL50Q8N5N7 158 aaKnown RBP20.36■□□□□ 0.85
USH1C-204ENST00000526313 TSPYL6Q8N831 410 aa20.36■□□□□ 0.85
USH1C-204ENST00000526313 ABTB2Q8N961 1025 aa20.36■□□□□ 0.85
USH1C-204ENST00000526313 ARHGAP45Q92619 1136 aa20.36■□□□□ 0.85
USH1C-204ENST00000526313 EYA1Q99502 592 aa20.35■□□□□ 0.85
USH1C-204ENST00000526313 CHL1O00533 1208 aa20.34■□□□□ 0.85
USH1C-204ENST00000526313 HOXC9P31274 260 aa20.34■□□□□ 0.85
USH1C-204ENST00000526313 DCTN1Q14203 1278 aa20.34■□□□□ 0.85
USH1C-204ENST00000526313 ANP32AP39687 249 aaKnown RBP20.33■□□□□ 0.85
USH1C-204ENST00000526313 RBM33Q96EV2 1170 aaKnown RBP20.33■□□□□ 0.85
USH1C-204ENST00000526313 C8orf58Q8NAV2 365 aa20.33■□□□□ 0.84
USH1C-204ENST00000526313 ANP32EQ9BTT0 268 aa20.33■□□□□ 0.84
USH1C-204ENST00000526313 RWDD1Q9H446 243 aaPredicted RBP20.33■□□□□ 0.84
USH1C-204ENST00000526313 RTL1A6NKG5 1358 aa20.32■□□□□ 0.84
USH1C-204ENST00000526313 TWISTNBQ3B726 338 aaPredicted RBP20.32■□□□□ 0.84
USH1C-204ENST00000526313 TMEM57Q8N5G2 664 aa20.32■□□□□ 0.84
USH1C-204ENST00000526313 FAM161AQ3B820 660 aa20.32■□□□□ 0.84
USH1C-204ENST00000526313 CRB1P82279 1406 aa20.31■□□□□ 0.84
USH1C-204ENST00000526313 IPO9Q96P70 1041 aaKnown RBP20.31■□□□□ 0.84
USH1C-204ENST00000526313 ZBTB40Q9NUA8 1239 aa20.31■□□□□ 0.84
USH1C-204ENST00000526313 C8orf34Q49A92 452 aa20.3■□□□□ 0.84
USH1C-204ENST00000526313 NUTM2GQ5VZR2 741 aa20.3■□□□□ 0.84
USH1C-204ENST00000526313 NFAT5O94916 1531 aa20.3■□□□□ 0.84
USH1C-204ENST00000526313 PAK3O75914 559 aaPredicted RBP20.3■□□□□ 0.84
USH1C-204ENST00000526313 HDAC1Q13547 482 aaPredicted RBP20.3■□□□□ 0.84
USH1C-204ENST00000526313 MTHFSDQ2M296 383 aaKnown RBP20.3■□□□□ 0.84
USH1C-204ENST00000526313 ESCO1Q5FWF5 840 aa20.3■□□□□ 0.84
USH1C-204ENST00000526313 KIAA0232Q92628 1395 aa20.3■□□□□ 0.84
USH1C-204ENST00000526313 RGS3P49796 1198 aa20.29■□□□□ 0.84
USH1C-204ENST00000526313 ITPRIPQ8IWB1 547 aa20.29■□□□□ 0.84
USH1C-204ENST00000526313 MCM10Q7L590 875 aa20.28■□□□□ 0.84
USH1C-204ENST00000526313 HTATSF1O43719 755 aaKnown RBP20.27■□□□□ 0.84
USH1C-204ENST00000526313 PSME1Q06323 249 aa20.27■□□□□ 0.84
USH1C-204ENST00000526313 GAS2L2Q8NHY3 880 aa20.27■□□□□ 0.84
USH1C-204ENST00000526313 PHRF1Q9P1Y6 1649 aaKnown RBP20.27■□□□□ 0.84
USH1C-204ENST00000526313 IP6K1Q92551 441 aa20.26■□□□□ 0.83
USH1C-204ENST00000526313 LTN1O94822 1766 aa20.26■□□□□ 0.83
USH1C-204ENST00000526313 ELL2O00472 640 aaPredicted RBP20.26■□□□□ 0.83
USH1C-204ENST00000526313 HAP1P54257 671 aaPredicted RBP20.26■□□□□ 0.83
USH1C-204ENST00000526313 ABCC4O15439 1325 aa20.25■□□□□ 0.83
USH1C-204ENST00000526313 FOXO3O43524 673 aa20.25■□□□□ 0.83
USH1C-204ENST00000526313 KCNH5Q8NCM2 988 aa20.24■□□□□ 0.83
USH1C-204ENST00000526313 ORAI2Q96SN7 254 aa20.24■□□□□ 0.83
USH1C-204ENST00000526313 PDZRN3Q9UPQ7 1066 aa20.24■□□□□ 0.83
USH1C-204ENST00000526313 ZBTB7BO15156 539 aaPredicted RBP20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms