RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 RTL1A6NKG5 1358 aa20.97■□□□□ 0.95
NUP54-214ENST00000514307 TOM1O60784 492 aa20.97■□□□□ 0.95
NUP54-214ENST00000514307 TMPOP42166 694 aaKnown RBP20.97■□□□□ 0.95
NUP54-214ENST00000514307 NEUROD2Q15784 382 aa20.97■□□□□ 0.95
NUP54-214ENST00000514307 WWC1Q8IX03 1113 aa20.97■□□□□ 0.95
NUP54-214ENST00000514307 PIK3C2AO00443 1686 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 E9PSI1 815 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 NEFLP07196 543 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 HMOX1P09601 288 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 SULT6B1Q6IMI4 303 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 MAP2P11137 1827 aaKnown RBP20.96■□□□□ 0.95
NUP54-214ENST00000514307 ZNF521Q96K83 1311 aa20.96■□□□□ 0.95
NUP54-214ENST00000514307 GTF3C3Q9Y5Q9 886 aa20.95■□□□□ 0.94
NUP54-214ENST00000514307 ZBTB7CA1YPR0 619 aa20.94■□□□□ 0.94
NUP54-214ENST00000514307 RIPK4P57078 832 aa20.94■□□□□ 0.94
NUP54-214ENST00000514307 LRRC59Q96AG4 307 aaKnown RBP20.94■□□□□ 0.94
NUP54-214ENST00000514307 TNS3Q68CZ2 1445 aa20.94■□□□□ 0.94
NUP54-214ENST00000514307 CALD1Q05682 793 aaKnown RBP20.93■□□□□ 0.94
NUP54-214ENST00000514307 SLFN5Q08AF3 891 aa20.93■□□□□ 0.94
NUP54-214ENST00000514307 LMOD3Q0VAK6 560 aa20.93■□□□□ 0.94
NUP54-214ENST00000514307 NFE2L2Q16236 605 aa20.93■□□□□ 0.94
NUP54-214ENST00000514307 PHF23Q9BUL5 403 aaPredicted RBP20.93■□□□□ 0.94
NUP54-214ENST00000514307 RRP7AQ9Y3A4 280 aaKnown RBP20.93■□□□□ 0.94
NUP54-214ENST00000514307 SHPRHQ149N8 1683 aa20.93■□□□□ 0.94
NUP54-214ENST00000514307 PLEKHG5O94827 1062 aa20.92■□□□□ 0.94
NUP54-214ENST00000514307 CDCA7LQ96GN5 454 aa20.92■□□□□ 0.94
NUP54-214ENST00000514307 EYA1Q99502 592 aa20.92■□□□□ 0.94
NUP54-214ENST00000514307 HAP1P54257 671 aaPredicted RBP20.91■□□□□ 0.94
NUP54-214ENST00000514307 USP54Q70EL1 1684 aa20.91■□□□□ 0.94
NUP54-214ENST00000514307 SUPT16HQ9Y5B9 1047 aaKnown RBP20.91■□□□□ 0.94
NUP54-214ENST00000514307 PXDNQ92626 1479 aa20.9■□□□□ 0.94
NUP54-214ENST00000514307 ZC3H6P61129 1189 aaKnown RBP20.9■□□□□ 0.94
NUP54-214ENST00000514307 TRMT2AQ8IZ69 625 aaKnown RBP20.9■□□□□ 0.94
NUP54-214ENST00000514307 LTV1Q96GA3 475 aaPredicted RBP20.9■□□□□ 0.94
NUP54-214ENST00000514307 MYH16Q9H6N6 1097 aa20.89■□□□□ 0.93
NUP54-214ENST00000514307 PHACTR3Q96KR7 559 aa20.88■□□□□ 0.93
NUP54-214ENST00000514307 SLIT3O75094 1523 aa20.88■□□□□ 0.93
NUP54-214ENST00000514307 IL16Q14005 1332 aa20.87■□□□□ 0.93
NUP54-214ENST00000514307 IGSF1Q8N6C5 1336 aa20.87■□□□□ 0.93
NUP54-214ENST00000514307 DUSP27Q5VZP5 1158 aa20.86■□□□□ 0.93
NUP54-214ENST00000514307 CABLES1Q8TDN4 633 aa20.86■□□□□ 0.93
NUP54-214ENST00000514307 TRPM3Q9HCF6 1732 aaPredicted RBP20.86■□□□□ 0.93
NUP54-214ENST00000514307 ROBO1Q9Y6N7 1651 aa20.86■□□□□ 0.93
NUP54-214ENST00000514307 ANKRD24Q8TF21 1146 aa20.85■□□□□ 0.93
NUP54-214ENST00000514307 RCAN3Q9UKA8 241 aa20.85■□□□□ 0.93
NUP54-214ENST00000514307 TRIM35Q9UPQ4 493 aa20.85■□□□□ 0.93
NUP54-214ENST00000514307 NFAT5O94916 1531 aa20.84■□□□□ 0.93
NUP54-214ENST00000514307 HSPA1LP34931 641 aa20.84■□□□□ 0.93
NUP54-214ENST00000514307 AEBP1Q8IUX7 1158 aa20.84■□□□□ 0.93
NUP54-214ENST00000514307 GAS2L2Q8NHY3 880 aa20.84■□□□□ 0.93
NUP54-214ENST00000514307 CPDO75976 1380 aa20.83■□□□□ 0.92
NUP54-214ENST00000514307 HTATSF1O43719 755 aaKnown RBP20.82■□□□□ 0.92
NUP54-214ENST00000514307 KDRP35968 1356 aa20.82■□□□□ 0.92
NUP54-214ENST00000514307 NBPF6Q5VWK0 638 aa20.81■□□□□ 0.92
NUP54-214ENST00000514307 NBPF4Q96M43 638 aa20.81■□□□□ 0.92
NUP54-214ENST00000514307 ERICH6BQ5W0A0 696 aa20.8■□□□□ 0.92
NUP54-214ENST00000514307 RTF1Q92541 710 aaKnown RBP20.8■□□□□ 0.92
NUP54-214ENST00000514307 PRDM11Q9NQV5 511 aa20.8■□□□□ 0.92
NUP54-214ENST00000514307 AXIN2Q9Y2T1 843 aa20.8■□□□□ 0.92
NUP54-214ENST00000514307 PEAK1Q9H792 1746 aa20.8■□□□□ 0.92
NUP54-214ENST00000514307 ALS2Q96Q42 1657 aa20.8■□□□□ 0.92
NUP54-214ENST00000514307 GNAI1P63096 354 aa20.79■□□□□ 0.92
NUP54-214ENST00000514307 AMOTQ4VCS5 1084 aa20.79■□□□□ 0.92
NUP54-214ENST00000514307 PLEKHO1Q53GL0 409 aaPredicted RBP20.79■□□□□ 0.92
NUP54-214ENST00000514307 CT47B1P0C2W7 299 aaPredicted RBP20.78■□□□□ 0.92
NUP54-214ENST00000514307 CSB-PGBD3P0DP91 1061 aa20.78■□□□□ 0.92
NUP54-214ENST00000514307 FKBP8Q14318 412 aa20.77■□□□□ 0.92
NUP54-214ENST00000514307 SPINK5Q9NQ38 1064 aaPredicted RBP20.77■□□□□ 0.92
NUP54-214ENST00000514307 MARF1Q9Y4F3 1742 aaKnown RBP20.77■□□□□ 0.92
NUP54-214ENST00000514307 MED1Q15648 1581 aaPredicted RBP20.76■□□□□ 0.91
NUP54-214ENST00000514307 KIAA0232Q92628 1395 aa20.76■□□□□ 0.91
NUP54-214ENST00000514307 MTHFSDQ2M296 383 aaKnown RBP20.76■□□□□ 0.91
NUP54-214ENST00000514307 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.76■□□□□ 0.91
NUP54-214ENST00000514307 NLRP2Q9NX02 1062 aa20.76■□□□□ 0.91
NUP54-214ENST00000514307 EVA1CP58658 441 aa20.75■□□□□ 0.91
NUP54-214ENST00000514307 IFT57Q9NWB7 429 aa20.75■□□□□ 0.91
NUP54-214ENST00000514307 RNF123Q5XPI4 1314 aa20.75■□□□□ 0.91
NUP54-214ENST00000514307 GNAT3A8MTJ3 354 aa20.74■□□□□ 0.91
NUP54-214ENST00000514307 PHLPP1O60346 1717 aa20.74■□□□□ 0.91
NUP54-214ENST00000514307 CHRNA2Q15822 529 aa20.74■□□□□ 0.91
NUP54-214ENST00000514307 ERBB3P21860 1342 aa20.74■□□□□ 0.91
NUP54-214ENST00000514307 RAPGEF4Q8WZA2 1011 aa20.73■□□□□ 0.91
NUP54-214ENST00000514307 PHRF1Q9P1Y6 1649 aaKnown RBP20.73■□□□□ 0.91
NUP54-214ENST00000514307 USHBP1Q8N6Y0 703 aa20.72■□□□□ 0.91
NUP54-214ENST00000514307 CFAP44Q96MT7 982 aa20.72■□□□□ 0.91
NUP54-214ENST00000514307 LAS1LQ9Y4W2 734 aaKnown RBP20.72■□□□□ 0.91
NUP54-214ENST00000514307 ABCC6O95255 1503 aa20.7■□□□□ 0.9
NUP54-214ENST00000514307 TATP17735 454 aaPredicted RBP20.7■□□□□ 0.9
NUP54-214ENST00000514307 NHSL1Q5SYE7 1610 aa20.69■□□□□ 0.9
NUP54-214ENST00000514307 FAM83GA6ND36 823 aa20.69■□□□□ 0.9
NUP54-214ENST00000514307 ZNF428Q96B54 188 aa20.69■□□□□ 0.9
NUP54-214ENST00000514307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP20.69■□□□□ 0.91e-7■■■□□ 16.2
NUP54-214ENST00000514307 SPG7Q9UQ90 795 aa20.69■□□□□ 0.9
NUP54-214ENST00000514307 AHDC1Q5TGY3 1603 aaPredicted RBP20.68■□□□□ 0.9
NUP54-214ENST00000514307 RGPD1P0DJD0 1748 aa20.68■□□□□ 0.9
NUP54-214ENST00000514307 ZNF853P0CG23 659 aa20.68■□□□□ 0.9
NUP54-214ENST00000514307 RRP1P56182 461 aaKnown RBP20.68■□□□□ 0.9
NUP54-214ENST00000514307 C1orf141Q5JVX7 400 aa20.68■□□□□ 0.9
NUP54-214ENST00000514307 BABAM1Q9NWV8 329 aa20.68■□□□□ 0.9
NUP54-214ENST00000514307 AKAP4Q5JQC9 854 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms