RNA–Protein interactions for RNA: ENST00000513988.1

CLDND1-229, Transcript of claudin domain containing 1, humanhuman

TSL 2

Gene CLDND1, Length 598 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1-229ENST00000513988 HSPA1AP0DMV8 641 aaKnown RBP11.9□□□□□ -0.5
CLDND1-229ENST00000513988 HSPA1BP0DMV9 641 aaKnown RBP11.9□□□□□ -0.5
CLDND1-229ENST00000513988 ALS2Q96Q42 1657 aa11.9□□□□□ -0.5
CLDND1-229ENST00000513988 LARP1Q6PKG0 1096 aaKnown RBP11.89□□□□□ -0.51
CLDND1-229ENST00000513988 THRAP3Q9Y2W1 955 aaKnown RBP11.89□□□□□ -0.51
CLDND1-229ENST00000513988 TOPAZ1Q8N9V7 1692 aa11.89□□□□□ -0.51
CLDND1-229ENST00000513988 ATP7BP35670 1465 aa11.89□□□□□ -0.51
CLDND1-229ENST00000513988 TRPM3Q9HCF6 1732 aaPredicted RBP11.89□□□□□ -0.51
CLDND1-229ENST00000513988 KANK4Q5T7N3 995 aaPredicted RBP11.88□□□□□ -0.51
CLDND1-229ENST00000513988 PMFBP1Q8TBY8 1022 aa11.88□□□□□ -0.51
CLDND1-229ENST00000513988 PLEKHH1Q9ULM0 1364 aa11.88□□□□□ -0.51
CLDND1-229ENST00000513988 IFT172Q9UG01 1749 aa11.88□□□□□ -0.51
CLDND1-229ENST00000513988 CRYBG1Q9Y4K1 1723 aa11.88□□□□□ -0.51
CLDND1-229ENST00000513988 CLTCL1P53675 1640 aa11.87□□□□□ -0.51
CLDND1-229ENST00000513988 SLC16A10Q8TF71 515 aa11.87□□□□□ -0.51
CLDND1-229ENST00000513988 GPRASP1Q5JY77 1395 aa11.87□□□□□ -0.51
CLDND1-229ENST00000513988 REM2Q8IYK8 340 aaPredicted RBP11.86□□□□□ -0.51
CLDND1-229ENST00000513988 NUP155O75694 1391 aa11.85□□□□□ -0.51
CLDND1-229ENST00000513988 ZC3H6P61129 1189 aaKnown RBP11.85□□□□□ -0.51
CLDND1-229ENST00000513988 ARHGEF28Q8N1W1 1705 aaKnown RBP11.85□□□□□ -0.51
CLDND1-229ENST00000513988 KIF1BO60333 1816 aa11.84□□□□□ -0.51
CLDND1-229ENST00000513988 DDB1Q16531 1140 aa11.84□□□□□ -0.51
CLDND1-229ENST00000513988 TULP4Q9NRJ4 1543 aa11.84□□□□□ -0.51
CLDND1-229ENST00000513988 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
CLDND1-229ENST00000513988 ZNF827Q17R98 1081 aa11.83□□□□□ -0.52
CLDND1-229ENST00000513988 RBM46Q8TBY0 533 aaKnown RBP11.83□□□□□ -0.52
CLDND1-229ENST00000513988 COL24A1Q17RW2 1714 aa11.83□□□□□ -0.52
CLDND1-229ENST00000513988 LRRC37A3O60309 1634 aa11.82□□□□□ -0.52
CLDND1-229ENST00000513988 PAPPAQ13219 1627 aa11.82□□□□□ -0.52
CLDND1-229ENST00000513988 ABCC11Q96J66 1382 aa11.81□□□□□ -0.52
CLDND1-229ENST00000513988 C16orf71Q8IYS4 520 aaPredicted RBP11.81□□□□□ -0.52
CLDND1-229ENST00000513988 ACIN1Q9UKV3 1341 aaKnown RBP11.81□□□□□ -0.52
CLDND1-229ENST00000513988 KNDC1Q76NI1 1749 aa11.8□□□□□ -0.52
CLDND1-229ENST00000513988 BCL9O00512 1426 aa11.8□□□□□ -0.52
CLDND1-229ENST00000513988 PHRF1Q9P1Y6 1649 aaKnown RBP11.8□□□□□ -0.52
CLDND1-229ENST00000513988 MLLT1Q03111 559 aaPredicted RBP11.8□□□□□ -0.52
CLDND1-229ENST00000513988 FSTL1Q12841 308 aa11.8□□□□□ -0.52
CLDND1-229ENST00000513988 RPGRIP1LQ68CZ1 1315 aa11.8□□□□□ -0.52
CLDND1-229ENST00000513988 ANKARQ7Z5J8 1434 aa11.79□□□□□ -0.52
CLDND1-229ENST00000513988 MARCH10Q8NA82 808 aaPredicted RBP11.79□□□□□ -0.52
CLDND1-229ENST00000513988 AKAP12Q02952 1782 aa11.78□□□□□ -0.52
CLDND1-229ENST00000513988 NMRK2Q9NPI5 230 aa11.78□□□□□ -0.52
CLDND1-229ENST00000513988 CRB1P82279 1406 aa11.77□□□□□ -0.53
CLDND1-229ENST00000513988 TMEM132EQ6IEE7 984 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 QSER1Q2KHR3 1735 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 USP19O94966 1318 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 PNPLA7Q6ZV29 1317 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 PPLO60437 1756 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 ANKRD30BQ9BXX2 1392 aa11.76□□□□□ -0.53
CLDND1-229ENST00000513988 LMO7Q8WWI1 1683 aa11.75□□□□□ -0.53
CLDND1-229ENST00000513988 PITPNM1O00562 1244 aa11.75□□□□□ -0.53
CLDND1-229ENST00000513988 NGDNQ8NEJ9 315 aaKnown RBP11.75□□□□□ -0.53
CLDND1-229ENST00000513988 CD2APQ9Y5K6 639 aa11.75□□□□□ -0.53
CLDND1-229ENST00000513988 KIAA1210Q9ULL0 1709 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 SPDYE2BA6NHP3 402 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 SPDYE6P0CI01 402 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 SPDYE2Q495Y8 402 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 NUTM2GQ5VZR2 741 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 TFCP2L1Q9NZI6 479 aa11.74□□□□□ -0.53
CLDND1-229ENST00000513988 COL5A2P05997 1499 aaPredicted RBP11.74□□□□□ -0.53
CLDND1-229ENST00000513988 SAFB2Q14151 953 aaKnown RBP eCLIP11.73□□□□□ -0.53
CLDND1-229ENST00000513988 FAM50AQ14320 339 aaKnown RBP11.73□□□□□ -0.53
CLDND1-229ENST00000513988 SIRT1Q96EB6 747 aa11.73□□□□□ -0.53
CLDND1-229ENST00000513988 YTHDC2Q9H6S0 1430 aaKnown RBP11.73□□□□□ -0.53
CLDND1-229ENST00000513988 CPDO75976 1380 aa11.72□□□□□ -0.53
CLDND1-229ENST00000513988 PRDM10Q9NQV6 1147 aa11.72□□□□□ -0.53
CLDND1-229ENST00000513988 LRRC4BQ9NT99 713 aa11.72□□□□□ -0.53
CLDND1-229ENST00000513988 BRD4O60885 1362 aaPredicted RBP11.71□□□□□ -0.53
CLDND1-229ENST00000513988 ADGRF5Q8IZF2 1346 aa11.71□□□□□ -0.53
CLDND1-229ENST00000513988 ABHD8Q96I13 439 aa11.71□□□□□ -0.53
CLDND1-229ENST00000513988 CDCA7Q9BWT1 371 aaPredicted RBP11.71□□□□□ -0.53
CLDND1-229ENST00000513988 NHSQ6T4R5 1651 aa11.71□□□□□ -0.54
CLDND1-229ENST00000513988 VPS8Q8N3P4 1428 aa11.7□□□□□ -0.54
CLDND1-229ENST00000513988 TOM1L2Q6ZVM7 507 aa11.7□□□□□ -0.54
CLDND1-229ENST00000513988 HIRIP3Q9BW71 556 aaPredicted RBP11.7□□□□□ -0.54
CLDND1-229ENST00000513988 IGSF1Q8N6C5 1336 aa11.69□□□□□ -0.54
CLDND1-229ENST00000513988 ACSBG1Q96GR2 724 aa11.69□□□□□ -0.54
CLDND1-229ENST00000513988 TUBGCP6Q96RT7 1819 aa11.69□□□□□ -0.54
CLDND1-229ENST00000513988 WNK3Q9BYP7 1800 aa11.69□□□□□ -0.54
CLDND1-229ENST00000513988 EIF3AQ14152 1382 aaKnown RBP11.68□□□□□ -0.54
CLDND1-229ENST00000513988 PDE4DIPQ5VU43 2346 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 FOXN1O15353 648 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 RGS19P49795 217 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 MSL1Q68DK7 614 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 PIP4P2Q8N4L2 257 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 SMC1BQ8NDV3 1235 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 PRAM1Q96QH2 718 aa11.68□□□□□ -0.54
CLDND1-229ENST00000513988 CICQ96RK0 1608 aaPredicted RBP11.68□□□□□ -0.54
CLDND1-229ENST00000513988 EXOC5O00471 708 aa11.67□□□□□ -0.54
CLDND1-229ENST00000513988 SLC27A3Q5K4L6 730 aa11.67□□□□□ -0.54
CLDND1-229ENST00000513988 ZNF692Q9BU19 519 aaPredicted RBP11.67□□□□□ -0.54
CLDND1-229ENST00000513988 BTAF1O14981 1849 aa11.67□□□□□ -0.54
CLDND1-229ENST00000513988 PRR36Q9H6K5 1346 aa11.66□□□□□ -0.54
CLDND1-229ENST00000513988 ZBTB7CA1YPR0 619 aa11.66□□□□□ -0.54
CLDND1-229ENST00000513988 USP6P35125 1406 aa11.66□□□□□ -0.54
CLDND1-229ENST00000513988 CCDC85CA6NKD9 419 aa11.65□□□□□ -0.54
CLDND1-229ENST00000513988 CTCFP49711 727 aaPredicted RBP11.65□□□□□ -0.54
CLDND1-229ENST00000513988 POGKQ9P215 609 aa11.65□□□□□ -0.54
CLDND1-229ENST00000513988 ROCK1Q13464 1354 aa11.65□□□□□ -0.55
CLDND1-229ENST00000513988 AIDAQ96BJ3 306 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms