RNA–Protein interactions for RNA: ENST00000511125.1

SMAD1-209, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 3,293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-209ENST00000511125 NBPF6Q5VWK0 638 aa10.68□□□□□ -0.7
SMAD1-209ENST00000511125 TCP11L2Q8N4U5 519 aa10.68□□□□□ -0.7
SMAD1-209ENST00000511125 NBPF4Q96M43 638 aa10.68□□□□□ -0.7
SMAD1-209ENST00000511125 THUMPD2Q9BTF0 503 aaKnown RBP10.68□□□□□ -0.7
SMAD1-209ENST00000511125 CCDC9Q9Y3X0 531 aaKnown RBP10.68□□□□□ -0.7
SMAD1-209ENST00000511125 ROBO1Q9Y6N7 1651 aa10.67□□□□□ -0.7
SMAD1-209ENST00000511125 PXDNQ92626 1479 aa10.67□□□□□ -0.7
SMAD1-209ENST00000511125 DCTN1Q14203 1278 aa10.67□□□□□ -0.7
SMAD1-209ENST00000511125 C8orf37Q96NL8 207 aa10.67□□□□□ -0.7
SMAD1-209ENST00000511125 LAS1LQ9Y4W2 734 aaKnown RBP10.67□□□□□ -0.7
SMAD1-209ENST00000511125 BTG4Q9NY30 223 aa10.66□□□□□ -0.7
SMAD1-209ENST00000511125 IP6K1Q92551 441 aa10.66□□□□□ -0.7
SMAD1-209ENST00000511125 MAPK8IP3Q9UPT6 1336 aa10.66□□□□□ -0.7
SMAD1-209ENST00000511125 USP31Q70CQ4 1352 aa10.66□□□□□ -0.7
SMAD1-209ENST00000511125 TOM1L2Q6ZVM7 507 aa10.65□□□□□ -0.7
SMAD1-209ENST00000511125 NRKQ7Z2Y5 1582 aa10.65□□□□□ -0.71
SMAD1-209ENST00000511125 SBNO1A3KN83 1393 aa10.65□□□□□ -0.71
SMAD1-209ENST00000511125 FLT4P35916 1363 aa10.65□□□□□ -0.71
SMAD1-209ENST00000511125 NEFMP07197 916 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 CENPBP07199 599 aaPredicted RBP10.64□□□□□ -0.71
SMAD1-209ENST00000511125 A0A0G2JS52 829 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 ARHGEF10O15013 1369 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 RIPK4P57078 832 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 MEX3CQ5U5Q3 659 aaKnown RBP10.64□□□□□ -0.71
SMAD1-209ENST00000511125 LARP1Q6PKG0 1096 aaKnown RBP10.64□□□□□ -0.71
SMAD1-209ENST00000511125 NGLY1Q96IV0 654 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 AATKQ6ZMQ8 1374 aa10.64□□□□□ -0.71
SMAD1-209ENST00000511125 MYT1Q01538 1121 aa10.63□□□□□ -0.71
SMAD1-209ENST00000511125 RUNDC1Q96C34 613 aa10.63□□□□□ -0.71
SMAD1-209ENST00000511125 USP19O94966 1318 aa10.63□□□□□ -0.71
SMAD1-209ENST00000511125 MED1Q15648 1581 aaPredicted RBP10.63□□□□□ -0.71
SMAD1-209ENST00000511125 RSPH6AQ9H0K4 717 aa10.62□□□□□ -0.71
SMAD1-209ENST00000511125 MCM10Q7L590 875 aa10.62□□□□□ -0.71
SMAD1-209ENST00000511125 SPINK5Q9NQ38 1064 aaPredicted RBP10.62□□□□□ -0.71
SMAD1-209ENST00000511125 KIF1AQ12756 1690 aa10.62□□□□□ -0.71
SMAD1-209ENST00000511125 IRX6P78412 446 aaPredicted RBP10.61□□□□□ -0.71
SMAD1-209ENST00000511125 PNPLA6Q8IY17 1366 aa10.61□□□□□ -0.71
SMAD1-209ENST00000511125 PEAK1Q9H792 1746 aa10.61□□□□□ -0.71
SMAD1-209ENST00000511125 MIS18AQ9NYP9 233 aa10.61□□□□□ -0.71
SMAD1-209ENST00000511125 TMPOP42166 694 aaKnown RBP10.6□□□□□ -0.71
SMAD1-209ENST00000511125 MTHFSDQ2M296 383 aaKnown RBP10.6□□□□□ -0.71
SMAD1-209ENST00000511125 PLEKHF1Q96S99 279 aa10.6□□□□□ -0.71
SMAD1-209ENST00000511125 TRPM3Q9HCF6 1732 aaPredicted RBP10.6□□□□□ -0.71
SMAD1-209ENST00000511125 FCHSD2O94868 740 aa10.6□□□□□ -0.71
SMAD1-209ENST00000511125 DDX54Q8TDD1 881 aaKnown RBP10.6□□□□□ -0.71
SMAD1-209ENST00000511125 ERBB3P21860 1342 aa10.59□□□□□ -0.71
SMAD1-209ENST00000511125 ELL2O00472 640 aaPredicted RBP10.59□□□□□ -0.71
SMAD1-209ENST00000511125 INSRP06213 1382 aa10.59□□□□□ -0.71
SMAD1-209ENST00000511125 TSR2Q969E8 191 aaKnown RBP10.59□□□□□ -0.71
SMAD1-209ENST00000511125 COL3A1P02461 1466 aaPredicted RBP10.58□□□□□ -0.72
SMAD1-209ENST00000511125 PHLPP1O60346 1717 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 ANKRD26Q9UPS8 1709 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 MPRIPQ6WCQ1 1025 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 WWC1Q8IX03 1113 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 RAPGEF4Q8WZA2 1011 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 CDK12Q9NYV4 1490 aaPredicted RBP10.58□□□□□ -0.72
SMAD1-209ENST00000511125 NFAT5O94916 1531 aa10.58□□□□□ -0.72
SMAD1-209ENST00000511125 TCERG1O14776 1098 aaKnown RBP10.57□□□□□ -0.72
SMAD1-209ENST00000511125 MARF1Q9Y4F3 1742 aaKnown RBP10.57□□□□□ -0.72
SMAD1-209ENST00000511125 SMG6Q86US8 1419 aaKnown RBP10.57□□□□□ -0.72
SMAD1-209ENST00000511125 FAM182BQ5T319 152 aa10.57□□□□□ -0.72
SMAD1-209ENST00000511125 ALS2Q96Q42 1657 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 ZBED9Q6R2W3 1325 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 LTN1O94822 1766 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 ZNF530Q6P9A1 599 aaPredicted RBP10.56□□□□□ -0.72
SMAD1-209ENST00000511125 TRIM35Q9UPQ4 493 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 IGSF1Q8N6C5 1336 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 SUPT16HQ9Y5B9 1047 aaKnown RBP10.56□□□□□ -0.72
SMAD1-209ENST00000511125 RGPD5Q99666 1765 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 KAT6BQ8WYB5 2073 aa10.56□□□□□ -0.72
SMAD1-209ENST00000511125 NFE2L2Q16236 605 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 LGR6Q9HBX8 967 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 GOLGA2Q08379 1002 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 SHPRHQ149N8 1683 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 CAMTA1Q9Y6Y1 1673 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 RTF1Q92541 710 aaKnown RBP10.55□□□□□ -0.72
SMAD1-209ENST00000511125 BCL2L13Q9BXK5 485 aa10.55□□□□□ -0.72
SMAD1-209ENST00000511125 TATP17735 454 aaPredicted RBP10.54□□□□□ -0.72
SMAD1-209ENST00000511125 JCADQ9P266 1359 aa10.54□□□□□ -0.72
SMAD1-209ENST00000511125 FAM98CQ17RN3 349 aaKnown RBP10.54□□□□□ -0.72
SMAD1-209ENST00000511125 PNNQ9H307 717 aaKnown RBP10.54□□□□□ -0.72
SMAD1-209ENST00000511125 USP21Q9UK80 565 aa10.54□□□□□ -0.72
SMAD1-209ENST00000511125 NHSL1Q5SYE7 1610 aa10.54□□□□□ -0.72
SMAD1-209ENST00000511125 KRT24Q2M2I5 525 aa10.53□□□□□ -0.72
SMAD1-209ENST00000511125 RGPD2P0DJD1 1756 aa10.53□□□□□ -0.72
SMAD1-209ENST00000511125 BLMP54132 1417 aaPredicted RBP10.53□□□□□ -0.72
SMAD1-209ENST00000511125 SLIT3O75094 1523 aa10.53□□□□□ -0.72
SMAD1-209ENST00000511125 NECTIN2Q92692 538 aa10.53□□□□□ -0.72
SMAD1-209ENST00000511125 WDR17Q8IZU2 1322 aa10.53□□□□□ -0.72
SMAD1-209ENST00000511125 SYTL4Q96C24 671 aaPredicted RBP10.53□□□□□ -0.72
SMAD1-209ENST00000511125 COL16A1Q07092 1604 aaPredicted RBP10.52□□□□□ -0.73
SMAD1-209ENST00000511125 PLIN1O60240 522 aa10.52□□□□□ -0.73
SMAD1-209ENST00000511125 PLEKHO1Q53GL0 409 aaPredicted RBP10.52□□□□□ -0.73
SMAD1-209ENST00000511125 C1orf141Q5JVX7 400 aa10.52□□□□□ -0.73
SMAD1-209ENST00000511125 RTL1A6NKG5 1358 aa10.51□□□□□ -0.73
SMAD1-209ENST00000511125 CPDO75976 1380 aa10.51□□□□□ -0.73
SMAD1-209ENST00000511125 AFF2P51816 1311 aa10.51□□□□□ -0.73
SMAD1-209ENST00000511125 AHDC1Q5TGY3 1603 aaPredicted RBP10.51□□□□□ -0.73
SMAD1-209ENST00000511125 PHRF1Q9P1Y6 1649 aaKnown RBP10.51□□□□□ -0.73
SMAD1-209ENST00000511125 IL17REQ8NFR9 667 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms